RNA–Protein interactions for RNA: ENST00000284771.6

PDLIM3-203, Transcript of PDZ and LIM domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM3, Length 1,672 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-203ENST00000284771 C9orf92A6NGG3 77 aa11.99□□□□□ -0.49
PDLIM3-203ENST00000284771 NOTCH2NLQ7Z3S9 236 aa11.99□□□□□ -0.49
PDLIM3-203ENST00000284771 CDIP1Q9H305 208 aa11.99□□□□□ -0.49
PDLIM3-203ENST00000284771 LRP2P98164 4655 aa11.99□□□□□ -0.49
PDLIM3-203ENST00000284771 K7EQZ3 153 aa11.97□□□□□ -0.49
PDLIM3-203ENST00000284771 Q8N9L7 120 aa11.97□□□□□ -0.49
PDLIM3-203ENST00000284771 IGHV6-1A0A0B4J1U7 121 aa11.97□□□□□ -0.49
PDLIM3-203ENST00000284771 A0A1B0GVX0 72 aa11.97□□□□□ -0.49
PDLIM3-203ENST00000284771 PRR15Q8IV56 129 aa11.95□□□□□ -0.5
PDLIM3-203ENST00000284771 NDUFB1O75438 58 aa11.94□□□□□ -0.5
PDLIM3-203ENST00000284771 CXCL6P80162 114 aa11.94□□□□□ -0.5
PDLIM3-203ENST00000284771 LINC00643Q86TS7 51 aa11.93□□□□□ -0.5
PDLIM3-203ENST00000284771 LINC00313P59037 77 aa11.9□□□□□ -0.5
PDLIM3-203ENST00000284771 XP32Q5T750 250 aa11.87□□□□□ -0.51
PDLIM3-203ENST00000284771 C8orf17Q9NRJ1 99 aa11.86□□□□□ -0.51
PDLIM3-203ENST00000284771 KRTAP16-1A8MUX0 517 aa11.85□□□□□ -0.51
PDLIM3-203ENST00000284771 ATP5EP2Q5VTU8 51 aa11.85□□□□□ -0.51
PDLIM3-203ENST00000284771 C8orf87E5RJ46 101 aa11.84□□□□□ -0.51
PDLIM3-203ENST00000284771 MMP24-AS1A0A0U1RRL7 71 aa11.83□□□□□ -0.52
PDLIM3-203ENST00000284771 HIST1H4AP62805 103 aaKnown RBP11.75□□□□□ -0.53
PDLIM3-203ENST00000284771 MT-ATP8P03928 68 aa11.75□□□□□ -0.53
PDLIM3-203ENST00000284771 hDV103S1A0JD37 113 aa11.74□□□□□ -0.53
PDLIM3-203ENST00000284771 WFDC13Q8IUB5 93 aa11.74□□□□□ -0.53
PDLIM3-203ENST00000284771 C20orf166-AS1Q96NR2 134 aa11.74□□□□□ -0.53
PDLIM3-203ENST00000284771 A0A087WVE0 104 aa11.72□□□□□ -0.53
PDLIM3-203ENST00000284771 HCG22E2RYF7 251 aa11.72□□□□□ -0.53
PDLIM3-203ENST00000284771 UBR4Q5T4S7 5183 aa11.72□□□□□ -0.53
PDLIM3-203ENST00000284771 A8MUU9 505 aa11.71□□□□□ -0.53
PDLIM3-203ENST00000284771 CASC2Q6XLA1 102 aa11.7□□□□□ -0.54
PDLIM3-203ENST00000284771 TMEM254Q8TBM7 123 aa11.7□□□□□ -0.54
PDLIM3-203ENST00000284771 RPL37P61927 97 aaKnown RBP11.69□□□□□ -0.54
PDLIM3-203ENST00000284771 Q75L30 129 aa11.69□□□□□ -0.54
PDLIM3-203ENST00000284771 Q8N9P0 234 aaPredicted RBP11.69□□□□□ -0.54
PDLIM3-203ENST00000284771 MRPL34Q9BQ48 92 aaKnown RBP11.69□□□□□ -0.54
PDLIM3-203ENST00000284771 MUC17Q685J3 4493 aa11.62□□□□□ -0.55
PDLIM3-203ENST00000284771 IMUPQ9GZP8 106 aa11.61□□□□□ -0.55
PDLIM3-203ENST00000284771 PCOTHQ58A44 107 aa11.59□□□□□ -0.55
PDLIM3-203ENST00000284771 NDUFS5O43920 106 aa11.56□□□□□ -0.56
PDLIM3-203ENST00000284771 SEC61BP60468 96 aaKnown RBP11.55□□□□□ -0.56
PDLIM3-203ENST00000284771 ATP11AUNQ6ZP68 121 aa11.54□□□□□ -0.56
PDLIM3-203ENST00000284771 MUC2Q02817 5179 aa11.54□□□□□ -0.56
PDLIM3-203ENST00000284771 ZCCHC13Q8WW36 166 aaKnown RBP11.49□□□□□ -0.57
PDLIM3-203ENST00000284771 Q5W150 140 aa11.49□□□□□ -0.57
PDLIM3-203ENST00000284771 KRTAP4-1Q9BYQ7 146 aa11.49□□□□□ -0.57
PDLIM3-203ENST00000284771 RNF213Q63HN8 5207 aa11.47□□□□□ -0.57
PDLIM3-203ENST00000284771 FAM236AA0A1B0GUQ0 79 aa11.43□□□□□ -0.58
PDLIM3-203ENST00000284771 FAM236BA0A1B0GV22 79 aa11.43□□□□□ -0.58
PDLIM3-203ENST00000284771 TP53AIP1Q9HCN2 124 aa11.42□□□□□ -0.58
PDLIM3-203ENST00000284771 OCR1Q9BZK8 76 aa11.4□□□□□ -0.59
PDLIM3-203ENST00000284771 SCGB1A1P11684 91 aa11.37□□□□□ -0.59
PDLIM3-203ENST00000284771 UQCRQO14949 82 aa11.31□□□□□ -0.6
PDLIM3-203ENST00000284771 TRAV22A0A0B4J277 110 aa11.28□□□□□ -0.6
PDLIM3-203ENST00000284771 SPINK7P58062 85 aa11.28□□□□□ -0.6
PDLIM3-203ENST00000284771 ATOX1O00244 68 aa11.23□□□□□ -0.61
PDLIM3-203ENST00000284771 IGKV2D-30A0A075B6S6 120 aa11.22□□□□□ -0.61
PDLIM3-203ENST00000284771 IGKV2-30P06310 120 aa11.22□□□□□ -0.61
PDLIM3-203ENST00000284771 H0Y9P7 68 aa11.21□□□□□ -0.61
PDLIM3-203ENST00000284771 TRAV7A0A075B6U4 112 aa11.18□□□□□ -0.62
PDLIM3-203ENST00000284771 C5orf47Q569G3 176 aa11.18□□□□□ -0.62
PDLIM3-203ENST00000284771 SMIM20Q8N5G0 67 aa11.18□□□□□ -0.62
PDLIM3-203ENST00000284771 HRES1P13985 223 aa11.17□□□□□ -0.62
PDLIM3-203ENST00000284771 C7orf65Q6ZTY9 151 aa11.17□□□□□ -0.62
PDLIM3-203ENST00000284771 LINC00208Q96KT6 92 aa11.13□□□□□ -0.63
PDLIM3-203ENST00000284771 CYP4F30PQ9H0H9 118 aa11.13□□□□□ -0.63
PDLIM3-203ENST00000284771 KRTAP19-2Q3LHN2 52 aa11.12□□□□□ -0.63
PDLIM3-203ENST00000284771 MP68P56378 58 aa11.11□□□□□ -0.63
PDLIM3-203ENST00000284771 C1orf64Q8NEQ6 169 aa11.11□□□□□ -0.63
PDLIM3-203ENST00000284771 MPLKIPQ8TAP9 179 aa11.11□□□□□ -0.63
PDLIM3-203ENST00000284771 LOC101927531A0A1B0GV80 90 aa11.11□□□□□ -0.63
PDLIM3-203ENST00000284771 SERP2Q8N6R1 65 aa11.11□□□□□ -0.63
PDLIM3-203ENST00000284771 FAT4Q6V0I7 4981 aa11.09□□□□□ -0.63
PDLIM3-203ENST00000284771 H3BPC8 53 aa11.04□□□□□ -0.64
PDLIM3-203ENST00000284771 LCE2CQ5TA81 110 aa11.02□□□□□ -0.64
PDLIM3-203ENST00000284771 A0A0U1RQV1 116 aa11□□□□□ -0.65
PDLIM3-203ENST00000284771 KLKP1Q107X0 134 aa11□□□□□ -0.65
PDLIM3-203ENST00000284771 C4orf26Q17RF5 130 aa11□□□□□ -0.65
PDLIM3-203ENST00000284771 COX7CP15954 63 aa10.98□□□□□ -0.65
PDLIM3-203ENST00000284771 ANAPC13Q9BS18 74 aa10.97□□□□□ -0.65
PDLIM3-203ENST00000284771 RBM12B-AS1Q9P1G2 102 aa10.96□□□□□ -0.65
PDLIM3-203ENST00000284771 C20orf197Q8N268 126 aa10.95□□□□□ -0.66
PDLIM3-203ENST00000284771 SNURFQ9Y675 71 aa10.95□□□□□ -0.66
PDLIM3-203ENST00000284771 COX6B2Q6YFQ2 88 aa10.91□□□□□ -0.66
PDLIM3-203ENST00000284771 KRTAP3-1Q9BYR8 98 aa10.9□□□□□ -0.66
PDLIM3-203ENST00000284771 FAM236DA0A1B0GTK5 79 aa10.88□□□□□ -0.67
PDLIM3-203ENST00000284771 FAM236CP0DP71 79 aa10.88□□□□□ -0.67
PDLIM3-203ENST00000284771 FLGP20930 4061 aaPredicted RBP10.82□□□□□ -0.68
PDLIM3-203ENST00000284771 CYSTM1Q9H1C7 97 aa10.82□□□□□ -0.68
PDLIM3-203ENST00000284771 CCDC179H3BU77 68 aa10.79□□□□□ -0.68
PDLIM3-203ENST00000284771 MT1HP80294 61 aa10.79□□□□□ -0.68
PDLIM3-203ENST00000284771 H1FX-AS1Q4G0G2 97 aa10.76□□□□□ -0.69
PDLIM3-203ENST00000284771 LCE2AQ5TA79 106 aaPredicted RBP10.74□□□□□ -0.69
PDLIM3-203ENST00000284771 H7BZZ5 65 aa10.69□□□□□ -0.7
PDLIM3-203ENST00000284771 DMAC1Q96GE9 116 aa10.65□□□□□ -0.7
PDLIM3-203ENST00000284771 A8MUN3 132 aa10.63□□□□□ -0.71
PDLIM3-203ENST00000284771 NDUFC1O43677 76 aa10.63□□□□□ -0.71
PDLIM3-203ENST00000284771 SPANXA2-OT1Q8N9U9 137 aa10.63□□□□□ -0.71
PDLIM3-203ENST00000284771 M0R2T5 61 aa10.57□□□□□ -0.72
PDLIM3-203ENST00000284771 LCA10Q71F78 164 aa10.57□□□□□ -0.72
PDLIM3-203ENST00000284771 S4R3F8 94 aa10.56□□□□□ -0.72
PDLIM3-203ENST00000284771 KRTAP3-3Q9BYR6 98 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms