RNA–Protein interactions for RNA: ENST00000275036.11

HMGN3-201, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

TSL 1 (best) BASIC

Gene HMGN3, Length 831 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-201ENST00000275036 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.41□□□□□ -1.22
HMGN3-201ENST00000275036 DSCR8Q96T75 97 aa7.41□□□□□ -1.22
HMGN3-201ENST00000275036 IGHV6-1A0A0B4J1U7 121 aa7.38□□□□□ -1.23
HMGN3-201ENST00000275036 ATXN8Q156A1 80 aa7.38□□□□□ -1.23
HMGN3-201ENST00000275036 C9JAW5 83 aa7.37□□□□□ -1.23
HMGN3-201ENST00000275036 Q6ZQT0 140 aa7.35□□□□□ -1.23
HMGN3-201ENST00000275036 A0A1B0GVX0 72 aa7.34□□□□□ -1.23
HMGN3-201ENST00000275036 LOC110117498A0A087WWA1 95 aa7.31□□□□□ -1.24
HMGN3-201ENST00000275036 LOC105371267A0A1B0GV96 52 aa7.31□□□□□ -1.24
HMGN3-201ENST00000275036 C8orf87E5RJ46 101 aa7.31□□□□□ -1.24
HMGN3-201ENST00000275036 TSTD3H0UI37 97 aa7.31□□□□□ -1.24
HMGN3-201ENST00000275036 JMJD7-PLA2G4BH0Y9G9 81 aa7.31□□□□□ -1.24
HMGN3-201ENST00000275036 BATFQ16520 125 aa7.31□□□□□ -1.24
HMGN3-201ENST00000275036 TRBV20-1A0A075B6N2 111 aa7.3□□□□□ -1.24
HMGN3-201ENST00000275036 J3KT08 172 aa7.29□□□□□ -1.24
HMGN3-201ENST00000275036 C21orf62-AS1Q17RA5 79 aa7.29□□□□□ -1.24
HMGN3-201ENST00000275036 C14orf132Q9NPU4 83 aa7.29□□□□□ -1.24
HMGN3-201ENST00000275036 HRES1P13985 223 aa7.28□□□□□ -1.24
HMGN3-201ENST00000275036 USH2AO75445 5202 aa7.27□□□□□ -1.25
HMGN3-201ENST00000275036 LYRM7Q5U5X0 104 aa7.27□□□□□ -1.25
HMGN3-201ENST00000275036 MPLKIPQ8TAP9 179 aa7.27□□□□□ -1.25
HMGN3-201ENST00000275036 KRTAP9-8Q9BYQ0 159 aa7.26□□□□□ -1.25
HMGN3-201ENST00000275036 A0A1B0GW54 56 aa7.25□□□□□ -1.25
HMGN3-201ENST00000275036 C9orf118A6NHY6 69 aa7.24□□□□□ -1.25
HMGN3-201ENST00000275036 TAX1BP3O14907 124 aa7.24□□□□□ -1.25
HMGN3-201ENST00000275036 PDE6GP18545 87 aa7.24□□□□□ -1.25
HMGN3-201ENST00000275036 SSPOA2VEC9 5147 aa7.24□□□□□ -1.25
HMGN3-201ENST00000275036 IGKV3D-7A0A0C4DH55 119 aa7.23□□□□□ -1.25
HMGN3-201ENST00000275036 A8MWP4 228 aa7.23□□□□□ -1.25
HMGN3-201ENST00000275036 NDUFB1O75438 58 aa7.22□□□□□ -1.25
HMGN3-201ENST00000275036 LCE3BQ5TA77 95 aa7.22□□□□□ -1.25
HMGN3-201ENST00000275036 MTURNQ8N3F0 131 aa7.22□□□□□ -1.25
HMGN3-201ENST00000275036 Q8N9P0 234 aaPredicted RBP7.22□□□□□ -1.25
HMGN3-201ENST00000275036 ZCCHC13Q8WW36 166 aaKnown RBP7.22□□□□□ -1.25
HMGN3-201ENST00000275036 C8orf17Q9NRJ1 99 aa7.22□□□□□ -1.25
HMGN3-201ENST00000275036 A0A1W2PPM0 123 aa7.21□□□□□ -1.26
HMGN3-201ENST00000275036 FAM236DA0A1B0GTK5 79 aa7.2□□□□□ -1.26
HMGN3-201ENST00000275036 FAM236CP0DP71 79 aa7.2□□□□□ -1.26
HMGN3-201ENST00000275036 H3BT86 120 aa7.18□□□□□ -1.26
HMGN3-201ENST00000275036 RBM12B-AS1Q9P1G2 102 aa7.18□□□□□ -1.26
HMGN3-201ENST00000275036 NREPQ16612 68 aa7.17□□□□□ -1.26
HMGN3-201ENST00000275036 KRTAP4-12Q9BQ66 201 aa7.17□□□□□ -1.26
HMGN3-201ENST00000275036 MT2AP02795 61 aa7.16□□□□□ -1.26
HMGN3-201ENST00000275036 PRR15Q8IV56 129 aa7.16□□□□□ -1.26
HMGN3-201ENST00000275036 SPINK7P58062 85 aa7.15□□□□□ -1.26
HMGN3-201ENST00000275036 Q6ZVQ6 151 aa7.15□□□□□ -1.26
HMGN3-201ENST00000275036 MMP24-AS1A0A0U1RRL7 71 aa7.13□□□□□ -1.27
HMGN3-201ENST00000275036 K7EQZ3 153 aa7.11□□□□□ -1.27
HMGN3-201ENST00000275036 MT1FP04733 61 aa7.11□□□□□ -1.27
HMGN3-201ENST00000275036 SPCS1Q9Y6A9 102 aa7.1□□□□□ -1.27
HMGN3-201ENST00000275036 TMEM254Q8TBM7 123 aa7.09□□□□□ -1.27
HMGN3-201ENST00000275036 MRPL34Q9BQ48 92 aaKnown RBP7.09□□□□□ -1.27
HMGN3-201ENST00000275036 hDV103S1A0JD37 113 aa7.06□□□□□ -1.28
HMGN3-201ENST00000275036 WFDC13Q8IUB5 93 aa7.05□□□□□ -1.28
HMGN3-201ENST00000275036 KRTAP9-9Q9BYP9 154 aa7.05□□□□□ -1.28
HMGN3-201ENST00000275036 KRTAP9-4Q9BYQ2 154 aa7.05□□□□□ -1.28
HMGN3-201ENST00000275036 BPY2O14599 106 aa7.04□□□□□ -1.28
HMGN3-201ENST00000275036 KRTAP9-3Q9BYQ3 159 aa7.03□□□□□ -1.28
HMGN3-201ENST00000275036 PRO0461Q9UI25 63 aa7.03□□□□□ -1.28
HMGN3-201ENST00000275036 COL5A1-AS1Q5SY13 56 aa7.02□□□□□ -1.29
HMGN3-201ENST00000275036 Q8N9L7 120 aa7.02□□□□□ -1.29
HMGN3-201ENST00000275036 FCGBPQ9Y6R7 5405 aaPredicted RBP7.01□□□□□ -1.29
HMGN3-201ENST00000275036 NDUFS5O43920 106 aa7□□□□□ -1.29
HMGN3-201ENST00000275036 KRTAP19-1Q8IUB9 90 aa7□□□□□ -1.29
HMGN3-201ENST00000275036 K7EP34 96 aa6.99□□□□□ -1.29
HMGN3-201ENST00000275036 KRTAP10-10P60014 251 aa6.99□□□□□ -1.29
HMGN3-201ENST00000275036 Q5W150 140 aa6.98□□□□□ -1.29
HMGN3-201ENST00000275036 KRTAP4-8A0A0G2JLE6 195 aa6.97□□□□□ -1.29
HMGN3-201ENST00000275036 LINC00846Q9NV44 126 aa6.96□□□□□ -1.3
HMGN3-201ENST00000275036 CASC2Q6XLA1 102 aa6.95□□□□□ -1.3
HMGN3-201ENST00000275036 IGKV2D-30A0A075B6S6 120 aa6.93□□□□□ -1.3
HMGN3-201ENST00000275036 IGKV2-30P06310 120 aa6.93□□□□□ -1.3
HMGN3-201ENST00000275036 HCG22E2RYF7 251 aa6.92□□□□□ -1.3
HMGN3-201ENST00000275036 C7orf65Q6ZTY9 151 aa6.9□□□□□ -1.3
HMGN3-201ENST00000275036 UBL5Q9BZL1 73 aa6.9□□□□□ -1.3
HMGN3-201ENST00000275036 H1FX-AS1Q4G0G2 97 aa6.89□□□□□ -1.31
HMGN3-201ENST00000275036 KRTAP9-7A8MTY7 169 aa6.88□□□□□ -1.31
HMGN3-201ENST00000275036 PCP4L1A6NKN8 68 aa6.87□□□□□ -1.31
HMGN3-201ENST00000275036 CXCL6P80162 114 aa6.85□□□□□ -1.31
HMGN3-201ENST00000275036 GTF2H5Q6ZYL4 71 aa6.85□□□□□ -1.31
HMGN3-201ENST00000275036 ETDBQ3ZM63 59 aa6.84□□□□□ -1.31
HMGN3-201ENST00000275036 MACF1Q9UPN3 7388 aaKnown RBP6.83□□□□□ -1.32
HMGN3-201ENST00000275036 SYNE2Q8WXH0 6885 aaKnown RBP6.83□□□□□ -1.32
HMGN3-201ENST00000275036 F8W1H4 67 aa6.83□□□□□ -1.32
HMGN3-201ENST00000275036 C4orf26Q17RF5 130 aa6.82□□□□□ -1.32
HMGN3-201ENST00000275036 KRTAP19-6Q3LI70 58 aa6.76□□□□□ -1.33
HMGN3-201ENST00000275036 KRTAP3-1Q9BYR8 98 aa6.76□□□□□ -1.33
HMGN3-201ENST00000275036 LCE1DQ5T752 114 aa6.74□□□□□ -1.33
HMGN3-201ENST00000275036 KRTAP4-7Q9BYR0 210 aa6.74□□□□□ -1.33
HMGN3-201ENST00000275036 TP53AIP1Q9HCN2 124 aa6.71□□□□□ -1.34
HMGN3-201ENST00000275036 C5orf47Q569G3 176 aa6.68□□□□□ -1.34
HMGN3-201ENST00000275036 C1orf64Q8NEQ6 169 aa6.68□□□□□ -1.34
HMGN3-201ENST00000275036 S4R3F8 94 aa6.65□□□□□ -1.34
HMGN3-201ENST00000275036 ACYP1P07311 99 aa6.64□□□□□ -1.35
HMGN3-201ENST00000275036 LCA10Q71F78 164 aa6.64□□□□□ -1.35
HMGN3-201ENST00000275036 FAM240AA0A1B0GVK7 77 aa6.62□□□□□ -1.35
HMGN3-201ENST00000275036 CYP4F30PQ9H0H9 118 aa6.62□□□□□ -1.35
HMGN3-201ENST00000275036 TRAV22A0A0B4J277 110 aa6.59□□□□□ -1.35
HMGN3-201ENST00000275036 ATP5EP2Q5VTU8 51 aa6.58□□□□□ -1.36
HMGN3-201ENST00000275036 CSAG1Q6PB30 78 aa6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms