RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 DNAH5Q8TE73 4624 aa9.82□□□□□ -0.84
VPS54-201ENST00000272322 A8MUN3 132 aa9.81□□□□□ -0.84
VPS54-201ENST00000272322 KRTAP10-1P60331 282 aa9.8□□□□□ -0.84
VPS54-201ENST00000272322 CD164Q04900 197 aa9.77□□□□□ -0.84
VPS54-201ENST00000272322 MRPL34Q9BQ48 92 aaKnown RBP9.77□□□□□ -0.85
VPS54-201ENST00000272322 A8MU10 97 aa9.76□□□□□ -0.85
VPS54-201ENST00000272322 Q5W150 140 aa9.75□□□□□ -0.85
VPS54-201ENST00000272322 ALMS1Q8TCU4 4167 aa9.74□□□□□ -0.85
VPS54-201ENST00000272322 PRO0628Q9UI54 55 aa9.73□□□□□ -0.85
VPS54-201ENST00000272322 CYP4F30PQ9H0H9 118 aa9.72□□□□□ -0.85
VPS54-201ENST00000272322 SMR3BP02814 79 aaPredicted RBP9.71□□□□□ -0.85
VPS54-201ENST00000272322 COA5Q86WW8 74 aa9.71□□□□□ -0.85
VPS54-201ENST00000272322 PKHD1P08F94 4074 aa9.71□□□□□ -0.85
VPS54-201ENST00000272322 SPAG11AQ6PDA7 123 aa9.71□□□□□ -0.86
VPS54-201ENST00000272322 VPS13BQ7Z7G8 4022 aa9.7□□□□□ -0.86
VPS54-201ENST00000272322 PRR15LQ9BU68 103 aa9.7□□□□□ -0.86
VPS54-201ENST00000272322 FAT2Q9NYQ8 4349 aa9.68□□□□□ -0.86
VPS54-201ENST00000272322 KRTAP13-2Q52LG2 175 aa9.68□□□□□ -0.86
VPS54-201ENST00000272322 Q8N9P0 234 aaPredicted RBP9.67□□□□□ -0.86
VPS54-201ENST00000272322 CHKB-CPT1BH3BT56 60 aa9.66□□□□□ -0.86
VPS54-201ENST00000272322 TP53AIP1Q9HCN2 124 aa9.66□□□□□ -0.86
VPS54-201ENST00000272322 H3BPC8 53 aa9.64□□□□□ -0.87
VPS54-201ENST00000272322 PLA2G1BP04054 148 aaKnown RBP9.63□□□□□ -0.87
VPS54-201ENST00000272322 Q1T7F1 81 aa9.63□□□□□ -0.87
VPS54-201ENST00000272322 PRR26Q8N8Z3 221 aa9.62□□□□□ -0.87
VPS54-201ENST00000272322 IGLV7-46A0A075B6I9 117 aa9.61□□□□□ -0.87
VPS54-201ENST00000272322 SPANXA2-OT1Q8N9U9 137 aa9.61□□□□□ -0.87
VPS54-201ENST00000272322 FAT1Q14517 4588 aa9.61□□□□□ -0.87
VPS54-201ENST00000272322 LINC00313P59037 77 aa9.61□□□□□ -0.87
VPS54-201ENST00000272322 ASB16-AS1Q495Z4 193 aa9.61□□□□□ -0.87
VPS54-201ENST00000272322 SSBP3-AS1Q7Z2R9 100 aa9.59□□□□□ -0.87
VPS54-201ENST00000272322 C1orf195Q5TG92 126 aa9.58□□□□□ -0.88
VPS54-201ENST00000272322 SPTSSBQ8NFR3 76 aa9.58□□□□□ -0.88
VPS54-201ENST00000272322 IGKV2D-30A0A075B6S6 120 aa9.57□□□□□ -0.88
VPS54-201ENST00000272322 IGKV2-30P06310 120 aa9.57□□□□□ -0.88
VPS54-201ENST00000272322 Q5VV11 94 aa9.57□□□□□ -0.88
VPS54-201ENST00000272322 HRES1P13985 223 aa9.56□□□□□ -0.88
VPS54-201ENST00000272322 C4orf48Q5BLP8 95 aa9.56□□□□□ -0.88
VPS54-201ENST00000272322 PKD1P98161 4303 aa9.54□□□□□ -0.88
VPS54-201ENST00000272322 A6NED7 52 aa9.54□□□□□ -0.88
VPS54-201ENST00000272322 TYMSOSQ8TAI1 123 aa9.53□□□□□ -0.88
VPS54-201ENST00000272322 FLG2Q5D862 2391 aaPredicted RBP9.51□□□□□ -0.89
VPS54-201ENST00000272322 DMBT1Q9UGM3 2413 aaPredicted RBP9.51□□□□□ -0.89
VPS54-201ENST00000272322 KRTAP1-4P0C5Y4 121 aa9.5□□□□□ -0.89
VPS54-201ENST00000272322 Q6ZSA8 131 aa9.47□□□□□ -0.89
VPS54-201ENST00000272322 V9GYY9 64 aa9.47□□□□□ -0.89
VPS54-201ENST00000272322 LOC101927531A0A1B0GV80 90 aa9.46□□□□□ -0.89
VPS54-201ENST00000272322 LIMD2Q9BT23 127 aa9.46□□□□□ -0.9
VPS54-201ENST00000272322 SACSQ9NZJ4 4579 aa9.44□□□□□ -0.9
VPS54-201ENST00000272322 C9orf92A6NGG3 77 aa9.44□□□□□ -0.9
VPS54-201ENST00000272322 SPINK1P00995 79 aa9.42□□□□□ -0.9
VPS54-201ENST00000272322 PMAIP1Q13794 54 aa9.41□□□□□ -0.9
VPS54-201ENST00000272322 DYNC1H1Q14204 4646 aaKnown RBP9.4□□□□□ -0.9
VPS54-201ENST00000272322 C8orf87E5RJ46 101 aa9.4□□□□□ -0.9
VPS54-201ENST00000272322 KRTAP13-3Q3SY46 172 aa9.4□□□□□ -0.91
VPS54-201ENST00000272322 FAM229AH3BQW9 127 aa9.39□□□□□ -0.91
VPS54-201ENST00000272322 SPINK7P58062 85 aa9.39□□□□□ -0.91
VPS54-201ENST00000272322 LCA10Q71F78 164 aa9.38□□□□□ -0.91
VPS54-201ENST00000272322 Q8N1X5 172 aa9.36□□□□□ -0.91
VPS54-201ENST00000272322 KMT2CQ8NEZ4 4911 aaKnown RBP9.35□□□□□ -0.91
VPS54-201ENST00000272322 ACYP2P14621 99 aa9.34□□□□□ -0.91
VPS54-201ENST00000272322 LINC00304Q8N9R0 145 aa9.33□□□□□ -0.92
VPS54-201ENST00000272322 KRTAP16-1A8MUX0 517 aa9.31□□□□□ -0.92
VPS54-201ENST00000272322 C7orf65Q6ZTY9 151 aa9.3□□□□□ -0.92
VPS54-201ENST00000272322 LINC01558Q9Y6Z2 57 aa9.28□□□□□ -0.92
VPS54-201ENST00000272322 Q75L30 129 aa9.28□□□□□ -0.92
VPS54-201ENST00000272322 MYCBP2O75592 4640 aa9.25□□□□□ -0.93
VPS54-201ENST00000272322 LRP1Q07954 4544 aaKnown RBP9.24□□□□□ -0.93
VPS54-201ENST00000272322 DMAC1Q96GE9 116 aa9.22□□□□□ -0.93
VPS54-201ENST00000272322 APOBP04114 4563 aaKnown RBP9.2□□□□□ -0.94
VPS54-201ENST00000272322 A0A1B0GU69 56 aa9.19□□□□□ -0.94
VPS54-201ENST00000272322 CDC42SE1Q9NRR8 79 aa9.14□□□□□ -0.95
VPS54-201ENST00000272322 ATP11AUNQ6ZP68 121 aa9.09□□□□□ -0.95
VPS54-201ENST00000272322 RYR2Q92736 4967 aa9.07□□□□□ -0.96
VPS54-201ENST00000272322 A0A1B0GVY2 172 aa9.04□□□□□ -0.96
VPS54-201ENST00000272322 RYR3Q15413 4870 aa9□□□□□ -0.97
VPS54-201ENST00000272322 KRTAP10-4P60372 401 aaPredicted RBP8.99□□□□□ -0.97
VPS54-201ENST00000272322 KIAA1109Q2LD37 5005 aa8.99□□□□□ -0.97
VPS54-201ENST00000272322 FAT3Q8TDW7 4589 aa8.98□□□□□ -0.97
VPS54-201ENST00000272322 A6NN06 94 aa8.97□□□□□ -0.97
VPS54-201ENST00000272322 PRAC1Q96KF2 57 aa8.97□□□□□ -0.97
VPS54-201ENST00000272322 PKHD1L1Q86WI1 4243 aa8.96□□□□□ -0.97
VPS54-201ENST00000272322 ADM2Q7Z4H4 148 aa8.96□□□□□ -0.98
VPS54-201ENST00000272322 MIR22HGQ0VDD5 57 aa8.96□□□□□ -0.98
VPS54-201ENST00000272322 KRTAP21-3Q3LHN1 58 aa8.94□□□□□ -0.98
VPS54-201ENST00000272322 SEC61GP60059 68 aa8.94□□□□□ -0.98
VPS54-201ENST00000272322 KTN1-AS1Q86SY8 53 aa8.94□□□□□ -0.98
VPS54-201ENST00000272322 UQCR11O14957 56 aa8.93□□□□□ -0.98
VPS54-201ENST00000272322 HSPG2P98160 4391 aa8.91□□□□□ -0.98
VPS54-201ENST00000272322 Q5VSD8 79 aa8.9□□□□□ -0.99
VPS54-201ENST00000272322 KRTAP3-1Q9BYR8 98 aa8.9□□□□□ -0.99
VPS54-201ENST00000272322 A8MUU9 505 aa8.88□□□□□ -0.99
VPS54-201ENST00000272322 C20orf166-AS1Q96NR2 134 aa8.86□□□□□ -0.99
VPS54-201ENST00000272322 RPS29P62273 56 aaKnown RBP8.84□□□□□ -0.99
VPS54-201ENST00000272322 KRTAP17-1Q9BYP8 105 aa8.83□□□□□ -1
VPS54-201ENST00000272322 RBM12B-AS1Q9P1G2 102 aa8.82□□□□□ -1
VPS54-201ENST00000272322 SPATA8Q6RVD6 105 aa8.8□□□□□ -1
VPS54-201ENST00000272322 RYR1P21817 5038 aa8.79□□□□□ -1
VPS54-201ENST00000272322 TNXBP22105 4242 aa8.75□□□□□ -1.01
VPS54-201ENST00000272322 LPAP08519 4548 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms