RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 RETNLBQ9BQ08 111 aa7.63□□□□□ -1.19
LIG1-201ENST00000263274 SPANXA2-OT1Q8N9U9 137 aa7.62□□□□□ -1.19
LIG1-201ENST00000263274 A0A087X002 238 aa7.62□□□□□ -1.19
LIG1-201ENST00000263274 NOTCH2NLQ7Z3S9 236 aa7.62□□□□□ -1.19
LIG1-201ENST00000263274 ZNF706Q9Y5V0 76 aaPredicted RBP7.62□□□□□ -1.19
LIG1-201ENST00000263274 Q6ZRN7 208 aaPredicted RBP7.61□□□□□ -1.19
LIG1-201ENST00000263274 IGLV5-52A0A0A0MRZ9 124 aa7.6□□□□□ -1.19
LIG1-201ENST00000263274 A0A1B0GVX0 72 aa7.6□□□□□ -1.19
LIG1-201ENST00000263274 LINC00313P59037 77 aa7.6□□□□□ -1.19
LIG1-201ENST00000263274 KRTAP13-1Q8IUC0 172 aa7.6□□□□□ -1.19
LIG1-201ENST00000263274 Q96NJ1 140 aa7.59□□□□□ -1.2
LIG1-201ENST00000263274 MRPL34Q9BQ48 92 aaKnown RBP7.59□□□□□ -1.2
LIG1-201ENST00000263274 TP53AIP1Q9HCN2 124 aa7.59□□□□□ -1.2
LIG1-201ENST00000263274 DNAH1Q9P2D7 4330 aa7.59□□□□□ -1.2
LIG1-201ENST00000263274 SPINK7P58062 85 aa7.58□□□□□ -1.2
LIG1-201ENST00000263274 LINC01554Q52M75 96 aa7.58□□□□□ -1.2
LIG1-201ENST00000263274 WWC2-AS2Q96NR7 200 aa7.58□□□□□ -1.2
LIG1-201ENST00000263274 ZNF861PO60384 105 aa7.57□□□□□ -1.2
LIG1-201ENST00000263274 LY6G6CO95867 125 aa7.57□□□□□ -1.2
LIG1-201ENST00000263274 IGLV7-46A0A075B6I9 117 aa7.56□□□□□ -1.2
LIG1-201ENST00000263274 DNAH3Q8TD57 4116 aa7.55□□□□□ -1.2
LIG1-201ENST00000263274 ADM2Q7Z4H4 148 aa7.55□□□□□ -1.2
LIG1-201ENST00000263274 DNAH7Q8WXX0 4024 aa7.54□□□□□ -1.2
LIG1-201ENST00000263274 PLECQ15149 4684 aaKnown RBP7.52□□□□□ -1.21
LIG1-201ENST00000263274 C1orf134Q5TEV5 83 aa7.52□□□□□ -1.21
LIG1-201ENST00000263274 LINC00483Q53H64 154 aa7.5□□□□□ -1.21
LIG1-201ENST00000263274 A0A0A0MQY5 61 aa7.49□□□□□ -1.21
LIG1-201ENST00000263274 LINC01558Q9Y6Z2 57 aa7.49□□□□□ -1.21
LIG1-201ENST00000263274 HRES1P13985 223 aa7.48□□□□□ -1.21
LIG1-201ENST00000263274 Q5W150 140 aa7.48□□□□□ -1.21
LIG1-201ENST00000263274 IGLV7-43P04211 117 aa7.47□□□□□ -1.21
LIG1-201ENST00000263274 PLAC8Q9NZF1 115 aa7.46□□□□□ -1.21
LIG1-201ENST00000263274 Q6ZR54 194 aa7.45□□□□□ -1.22
LIG1-201ENST00000263274 ASB16-AS1Q495Z4 193 aa7.41□□□□□ -1.22
LIG1-201ENST00000263274 IGKV2D-30A0A075B6S6 120 aa7.39□□□□□ -1.23
LIG1-201ENST00000263274 IGKV2-30P06310 120 aa7.39□□□□□ -1.23
LIG1-201ENST00000263274 KRTAP10-2P60368 255 aa7.38□□□□□ -1.23
LIG1-201ENST00000263274 FRAS1Q86XX4 4008 aa7.38□□□□□ -1.23
LIG1-201ENST00000263274 ACYP2P14621 99 aa7.37□□□□□ -1.23
LIG1-201ENST00000263274 STARD9Q9P2P6 4700 aa7.36□□□□□ -1.23
LIG1-201ENST00000263274 SSBP3-AS1Q7Z2R9 100 aa7.36□□□□□ -1.23
LIG1-201ENST00000263274 KMT2AQ03164 3969 aa7.34□□□□□ -1.23
LIG1-201ENST00000263274 DNAH8Q96JB1 4490 aa7.32□□□□□ -1.24
LIG1-201ENST00000263274 SPINK1P00995 79 aa7.31□□□□□ -1.24
LIG1-201ENST00000263274 FAM229AH3BQW9 127 aa7.31□□□□□ -1.24
LIG1-201ENST00000263274 A0A1B0GU69 56 aa7.3□□□□□ -1.24
LIG1-201ENST00000263274 KRTAP13-2Q52LG2 175 aa7.28□□□□□ -1.24
LIG1-201ENST00000263274 PLA2G1BP04054 148 aaKnown RBP7.27□□□□□ -1.25
LIG1-201ENST00000263274 KRTAP10-1P60331 282 aa7.27□□□□□ -1.25
LIG1-201ENST00000263274 CSAG1Q6PB30 78 aa7.26□□□□□ -1.25
LIG1-201ENST00000263274 VPS13DQ5THJ4 4388 aa7.26□□□□□ -1.25
LIG1-201ENST00000263274 DNAH17Q9UFH2 4485 aa7.25□□□□□ -1.25
LIG1-201ENST00000263274 TYMSOSQ8TAI1 123 aa7.23□□□□□ -1.25
LIG1-201ENST00000263274 HECTD4Q9Y4D8 3996 aa7.23□□□□□ -1.25
LIG1-201ENST00000263274 KRTAP13-3Q3SY46 172 aa7.23□□□□□ -1.25
LIG1-201ENST00000263274 MIR22HGQ0VDD5 57 aa7.22□□□□□ -1.25
LIG1-201ENST00000263274 DNAH2Q9P225 4427 aa7.22□□□□□ -1.25
LIG1-201ENST00000263274 DNAH11Q96DT5 4516 aa7.21□□□□□ -1.26
LIG1-201ENST00000263274 DMAC1Q96GE9 116 aa7.2□□□□□ -1.26
LIG1-201ENST00000263274 Q8N1X5 172 aa7.2□□□□□ -1.26
LIG1-201ENST00000263274 DYNC2H1Q8NCM8 4307 aaKnown RBP7.19□□□□□ -1.26
LIG1-201ENST00000263274 KMT2CQ8NEZ4 4911 aaKnown RBP7.19□□□□□ -1.26
LIG1-201ENST00000263274 FLG2Q5D862 2391 aaPredicted RBP7.19□□□□□ -1.26
LIG1-201ENST00000263274 SMR3BP02814 79 aaPredicted RBP7.18□□□□□ -1.26
LIG1-201ENST00000263274 UQCR11O14957 56 aa7.18□□□□□ -1.26
LIG1-201ENST00000263274 DNAH6Q9C0G6 4158 aa7.16□□□□□ -1.26
LIG1-201ENST00000263274 C9orf92A6NGG3 77 aa7.14□□□□□ -1.27
LIG1-201ENST00000263274 DMBT1Q9UGM3 2413 aaPredicted RBP7.13□□□□□ -1.27
LIG1-201ENST00000263274 SPATA8Q6RVD6 105 aa7.12□□□□□ -1.27
LIG1-201ENST00000263274 KRTAP1-4P0C5Y4 121 aa7.11□□□□□ -1.27
LIG1-201ENST00000263274 HYDINQ4G0P3 5121 aa7.11□□□□□ -1.27
LIG1-201ENST00000263274 LRP1BQ9NZR2 4599 aa7.1□□□□□ -1.27
LIG1-201ENST00000263274 KRTAP16-1A8MUX0 517 aa7.09□□□□□ -1.27
LIG1-201ENST00000263274 LINC00304Q8N9R0 145 aa7.08□□□□□ -1.28
LIG1-201ENST00000263274 ROMO1P60602 79 aa7.06□□□□□ -1.28
LIG1-201ENST00000263274 Q6ZSA8 131 aa7.05□□□□□ -1.28
LIG1-201ENST00000263274 DNAH5Q8TE73 4624 aa7.02□□□□□ -1.29
LIG1-201ENST00000263274 ALMS1Q8TCU4 4167 aa7.02□□□□□ -1.29
LIG1-201ENST00000263274 SACSQ9NZJ4 4579 aa6.98□□□□□ -1.29
LIG1-201ENST00000263274 RYR3Q15413 4870 aa6.97□□□□□ -1.29
LIG1-201ENST00000263274 CRIPTQ9P021 101 aa6.96□□□□□ -1.29
LIG1-201ENST00000263274 VPS13BQ7Z7G8 4022 aa6.95□□□□□ -1.3
LIG1-201ENST00000263274 P0C880 135 aa6.94□□□□□ -1.3
LIG1-201ENST00000263274 PKHD1P08F94 4074 aa6.88□□□□□ -1.31
LIG1-201ENST00000263274 RYR2Q92736 4967 aa6.88□□□□□ -1.31
LIG1-201ENST00000263274 KRTAP25-1Q3LHN0 102 aa6.88□□□□□ -1.31
LIG1-201ENST00000263274 FAT1Q14517 4588 aa6.85□□□□□ -1.31
LIG1-201ENST00000263274 A0A1B0GU33 70 aa6.83□□□□□ -1.32
LIG1-201ENST00000263274 FAT2Q9NYQ8 4349 aa6.82□□□□□ -1.32
LIG1-201ENST00000263274 NDUFAF8A1L188 74 aa6.82□□□□□ -1.32
LIG1-201ENST00000263274 PKD1P98161 4303 aa6.81□□□□□ -1.32
LIG1-201ENST00000263274 EPPK1P58107 5090 aaKnown RBP6.79□□□□□ -1.32
LIG1-201ENST00000263274 A8MUU9 505 aa6.79□□□□□ -1.32
LIG1-201ENST00000263274 H0YAA0 97 aa6.78□□□□□ -1.32
LIG1-201ENST00000263274 KRTAP3-1Q9BYR8 98 aa6.77□□□□□ -1.33
LIG1-201ENST00000263274 KIAA1109Q2LD37 5005 aa6.77□□□□□ -1.33
LIG1-201ENST00000263274 C20orf166-AS1Q96NR2 134 aa6.76□□□□□ -1.33
LIG1-201ENST00000263274 RPS29P62273 56 aaKnown RBP6.75□□□□□ -1.33
LIG1-201ENST00000263274 K7ERS5 55 aa6.74□□□□□ -1.33
LIG1-201ENST00000263274 SPINT4Q6UDR6 99 aa6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms