RNA–Protein interactions for RNA: ENST00000262539.7

PTPN3-201, Transcript of protein tyrosine phosphatase, non-receptor type 3, humanhuman

TSL 5 BASIC

Gene PTPN3, Length 6,832 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN3-201ENST00000262539 LAMA5O15230 3695 aa4.98□□□□□ -1.61
PTPN3-201ENST00000262539 PLAC4Q8WY50 150 aa4.96□□□□□ -1.62
PTPN3-201ENST00000262539 R4GN34 69 aa4.94□□□□□ -1.62
PTPN3-201ENST00000262539 H7BZZ5 65 aa4.93□□□□□ -1.62
PTPN3-201ENST00000262539 ZCCHC13Q8WW36 166 aaKnown RBP4.93□□□□□ -1.62
PTPN3-201ENST00000262539 A0A1B0GU33 70 aa4.92□□□□□ -1.62
PTPN3-201ENST00000262539 MMP24-AS1A0A0U1RRL7 71 aa4.92□□□□□ -1.62
PTPN3-201ENST00000262539 KRTAP29-1A8MX34 341 aaPredicted RBP4.92□□□□□ -1.62
PTPN3-201ENST00000262539 OXTP01178 125 aa4.92□□□□□ -1.62
PTPN3-201ENST00000262539 Q1T7F1 81 aa4.92□□□□□ -1.62
PTPN3-201ENST00000262539 DCHS1Q96JQ0 3298 aa4.9□□□□□ -1.62
PTPN3-201ENST00000262539 PANO1I0J062 215 aa4.89□□□□□ -1.63
PTPN3-201ENST00000262539 KRTAP10-1P60331 282 aa4.89□□□□□ -1.63
PTPN3-201ENST00000262539 LCA10Q71F78 164 aa4.89□□□□□ -1.63
PTPN3-201ENST00000262539 KRTAP10-2P60368 255 aa4.87□□□□□ -1.63
PTPN3-201ENST00000262539 FP248Q71RG6 208 aaPredicted RBP4.86□□□□□ -1.63
PTPN3-201ENST00000262539 DMAC1Q96GE9 116 aa4.85□□□□□ -1.63
PTPN3-201ENST00000262539 M0QZ58 72 aa4.85□□□□□ -1.63
PTPN3-201ENST00000262539 FBN3Q75N90 2809 aa4.84□□□□□ -1.63
PTPN3-201ENST00000262539 SPINK7P58062 85 aa4.84□□□□□ -1.63
PTPN3-201ENST00000262539 SMG1Q96Q15 3661 aaKnown RBP4.84□□□□□ -1.63
PTPN3-201ENST00000262539 KRTAP11-1Q8IUC1 163 aa4.83□□□□□ -1.64
PTPN3-201ENST00000262539 H1FX-AS1Q4G0G2 97 aa4.82□□□□□ -1.64
PTPN3-201ENST00000262539 KTN1-AS1Q86SY8 53 aa4.81□□□□□ -1.64
PTPN3-201ENST00000262539 Q8N9P0 234 aaPredicted RBP4.8□□□□□ -1.64
PTPN3-201ENST00000262539 ADM2Q7Z4H4 148 aa4.78□□□□□ -1.64
PTPN3-201ENST00000262539 Q5W150 140 aa4.77□□□□□ -1.65
PTPN3-201ENST00000262539 PKD1L1Q8TDX9 2849 aa4.77□□□□□ -1.65
PTPN3-201ENST00000262539 FBN1P35555 2871 aaKnown RBP4.75□□□□□ -1.65
PTPN3-201ENST00000262539 KRTAP1-4P0C5Y4 121 aa4.75□□□□□ -1.65
PTPN3-201ENST00000262539 KRTAP13-2Q52LG2 175 aa4.75□□□□□ -1.65
PTPN3-201ENST00000262539 ANK3Q12955 4377 aaKnown RBP4.74□□□□□ -1.65
PTPN3-201ENST00000262539 BSNQ9UPA5 3926 aa4.73□□□□□ -1.65
PTPN3-201ENST00000262539 A0A0A0MQY5 61 aa4.73□□□□□ -1.65
PTPN3-201ENST00000262539 RELNP78509 3460 aa4.72□□□□□ -1.65
PTPN3-201ENST00000262539 A0A087X002 238 aa4.72□□□□□ -1.65
PTPN3-201ENST00000262539 CYSTM1Q9H1C7 97 aa4.71□□□□□ -1.66
PTPN3-201ENST00000262539 TGP01266 2768 aa4.7□□□□□ -1.66
PTPN3-201ENST00000262539 A0A1B0GVY2 172 aa4.7□□□□□ -1.66
PTPN3-201ENST00000262539 CELSR1Q9NYQ6 3014 aa4.7□□□□□ -1.66
PTPN3-201ENST00000262539 DMBT1Q9UGM3 2413 aaPredicted RBP4.67□□□□□ -1.66
PTPN3-201ENST00000262539 RPL37P61927 97 aaKnown RBP4.67□□□□□ -1.66
PTPN3-201ENST00000262539 ROMO1P60602 79 aa4.67□□□□□ -1.66
PTPN3-201ENST00000262539 SVEP1Q4LDE5 3571 aa4.67□□□□□ -1.66
PTPN3-201ENST00000262539 Q75L30 129 aa4.66□□□□□ -1.66
PTPN3-201ENST00000262539 LINC01558Q9Y6Z2 57 aa4.66□□□□□ -1.66
PTPN3-201ENST00000262539 ZFHX3Q15911 3703 aa4.65□□□□□ -1.66
PTPN3-201ENST00000262539 C20orf166-AS1Q96NR2 134 aa4.64□□□□□ -1.67
PTPN3-201ENST00000262539 A8MUU9 505 aa4.64□□□□□ -1.67
PTPN3-201ENST00000262539 TENM2Q9NT68 2774 aa4.64□□□□□ -1.67
PTPN3-201ENST00000262539 MEGF8Q7Z7M0 2845 aa4.63□□□□□ -1.67
PTPN3-201ENST00000262539 SPATA8Q6RVD6 105 aa4.63□□□□□ -1.67
PTPN3-201ENST00000262539 CSMD1Q96PZ7 3565 aa4.62□□□□□ -1.67
PTPN3-201ENST00000262539 PRAC1Q96KF2 57 aa4.62□□□□□ -1.67
PTPN3-201ENST00000262539 VPS13CQ709C8 3753 aa4.6□□□□□ -1.67
PTPN3-201ENST00000262539 NOTCH2NLQ7Z3S9 236 aa4.59□□□□□ -1.67
PTPN3-201ENST00000262539 KRTAP10-8P60410 259 aa4.56□□□□□ -1.68
PTPN3-201ENST00000262539 KRTAP16-1A8MUX0 517 aa4.56□□□□□ -1.68
PTPN3-201ENST00000262539 CSMD2Q7Z408 3487 aa4.55□□□□□ -1.68
PTPN3-201ENST00000262539 KRTAP13-3Q3SY46 172 aa4.55□□□□□ -1.68
PTPN3-201ENST00000262539 TPRXLQ17RH7 258 aa4.5□□□□□ -1.69
PTPN3-201ENST00000262539 Q5VV11 94 aa4.49□□□□□ -1.69
PTPN3-201ENST00000262539 FLG2Q5D862 2391 aaPredicted RBP4.49□□□□□ -1.69
PTPN3-201ENST00000262539 KRTAP10-4P60372 401 aaPredicted RBP4.48□□□□□ -1.69
PTPN3-201ENST00000262539 TNP1P09430 55 aa4.46□□□□□ -1.69
PTPN3-201ENST00000262539 XP32Q5T750 250 aa4.43□□□□□ -1.7
PTPN3-201ENST00000262539 A8MU10 97 aa4.43□□□□□ -1.7
PTPN3-201ENST00000262539 H3BS24 57 aa4.43□□□□□ -1.7
PTPN3-201ENST00000262539 PLECQ15149 4684 aaKnown RBP4.42□□□□□ -1.7
PTPN3-201ENST00000262539 CUBNO60494 3623 aa4.42□□□□□ -1.7
PTPN3-201ENST00000262539 C10orf95Q9H7T3 257 aa4.41□□□□□ -1.7
PTPN3-201ENST00000262539 DNHD1Q96M86 4753 aa4.4□□□□□ -1.71
PTPN3-201ENST00000262539 KRTAP10-10P60014 251 aa4.38□□□□□ -1.71
PTPN3-201ENST00000262539 DNAH10Q8IVF4 4471 aa4.37□□□□□ -1.71
PTPN3-201ENST00000262539 DNAH11Q96DT5 4516 aa4.33□□□□□ -1.72
PTPN3-201ENST00000262539 PRO2289Q9P1D8 64 aa4.32□□□□□ -1.72
PTPN3-201ENST00000262539 DNAH9Q9NYC9 4486 aa4.31□□□□□ -1.72
PTPN3-201ENST00000262539 ZNF469Q96JG9 3925 aaPredicted RBP4.31□□□□□ -1.72
PTPN3-201ENST00000262539 MT1HL1P0DM35 61 aa4.3□□□□□ -1.72
PTPN3-201ENST00000262539 P0C880 135 aa4.29□□□□□ -1.72
PTPN3-201ENST00000262539 TRRAPQ9Y4A5 3859 aa4.29□□□□□ -1.72
PTPN3-201ENST00000262539 KRTAP25-1Q3LHN0 102 aa4.29□□□□□ -1.72
PTPN3-201ENST00000262539 AKAP9Q99996 3911 aa4.27□□□□□ -1.73
PTPN3-201ENST00000262539 HUWE1Q7Z6Z7 4374 aaKnown RBP4.27□□□□□ -1.73
PTPN3-201ENST00000262539 VPS13DQ5THJ4 4388 aa4.27□□□□□ -1.73
PTPN3-201ENST00000262539 H0YAA0 97 aa4.26□□□□□ -1.73
PTPN3-201ENST00000262539 NBPF19A0A087WUL8 3843 aa4.26□□□□□ -1.73
PTPN3-201ENST00000262539 RYR1P21817 5038 aa4.25□□□□□ -1.73
PTPN3-201ENST00000262539 A6NN06 94 aa4.24□□□□□ -1.73
PTPN3-201ENST00000262539 SRRM2Q9UQ35 2752 aaKnown RBP4.24□□□□□ -1.73
PTPN3-201ENST00000262539 ALMS1Q8TCU4 4167 aa4.24□□□□□ -1.73
PTPN3-201ENST00000262539 KIAA1109Q2LD37 5005 aa4.24□□□□□ -1.73
PTPN3-201ENST00000262539 RYR2Q92736 4967 aa4.23□□□□□ -1.73
PTPN3-201ENST00000262539 DNAH5Q8TE73 4624 aa4.23□□□□□ -1.73
PTPN3-201ENST00000262539 DNAH17Q9UFH2 4485 aa4.21□□□□□ -1.74
PTPN3-201ENST00000262539 DYNC1H1Q14204 4646 aaKnown RBP4.21□□□□□ -1.74
PTPN3-201ENST00000262539 COL7A1Q02388 2944 aa4.2□□□□□ -1.74
PTPN3-201ENST00000262539 NDUFAF8A1L188 74 aa4.2□□□□□ -1.74
PTPN3-201ENST00000262539 DNAH1Q9P2D7 4330 aa4.19□□□□□ -1.74
PTPN3-201ENST00000262539 PP632Q6XCG6 107 aa4.17□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 74.7 ms