RNA–Protein interactions for RNA: ENST00000257290.9

PDGFRA-201, Transcript of platelet derived growth factor receptor alpha, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDGFRA, Length 6,576 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRA-201ENST00000257290 SETXQ7Z333 2677 aaKnown RBP3.54□□□□□ -1.84
PDGFRA-201ENST00000257290 MAST4O15021 2626 aa3.54□□□□□ -1.84
PDGFRA-201ENST00000257290 FLNCQ14315 2725 aa3.54□□□□□ -1.84
PDGFRA-201ENST00000257290 ITPR1Q14643 2758 aa3.54□□□□□ -1.84
PDGFRA-201ENST00000257290 TEP1Q99973 2627 aaKnown RBP3.54□□□□□ -1.84
PDGFRA-201ENST00000257290 ATMQ13315 3056 aa3.54□□□□□ -1.84
PDGFRA-201ENST00000257290 CENPEQ02224 2701 aa3.54□□□□□ -1.84
PDGFRA-201ENST00000257290 APCP25054 2843 aa3.53□□□□□ -1.84
PDGFRA-201ENST00000257290 FREM2Q5SZK8 3169 aa3.53□□□□□ -1.84
PDGFRA-201ENST00000257290 CHD6Q8TD26 2715 aa3.53□□□□□ -1.84
PDGFRA-201ENST00000257290 LRBAP50851 2863 aa3.52□□□□□ -1.85
PDGFRA-201ENST00000257290 TNP1P09430 55 aa3.52□□□□□ -1.85
PDGFRA-201ENST00000257290 BAHCC1Q9P281 2608 aa3.52□□□□□ -1.85
PDGFRA-201ENST00000257290 WDFY3Q8IZQ1 3526 aa3.52□□□□□ -1.85
PDGFRA-201ENST00000257290 BOD1L1Q8NFC6 3051 aa3.51□□□□□ -1.85
PDGFRA-201ENST00000257290 ADGRG4Q8IZF6 3080 aa3.48□□□□□ -1.85
PDGFRA-201ENST00000257290 FRYLO94915 3013 aa3.48□□□□□ -1.85
PDGFRA-201ENST00000257290 HIVEP1P15822 2718 aa3.48□□□□□ -1.85
PDGFRA-201ENST00000257290 ITPR2Q14571 2701 aa3.48□□□□□ -1.85
PDGFRA-201ENST00000257290 GCN1Q92616 2671 aaKnown RBP3.48□□□□□ -1.85
PDGFRA-201ENST00000257290 ANK3Q12955 4377 aaKnown RBP3.48□□□□□ -1.85
PDGFRA-201ENST00000257290 ASPMQ8IZT6 3477 aa3.47□□□□□ -1.85
PDGFRA-201ENST00000257290 KRTAP13-2Q52LG2 175 aa3.47□□□□□ -1.85
PDGFRA-201ENST00000257290 MGAM2Q2M2H8 2515 aa3.47□□□□□ -1.85
PDGFRA-201ENST00000257290 COL12A1Q99715 3063 aa3.47□□□□□ -1.85
PDGFRA-201ENST00000257290 DMDP11532 3685 aa3.46□□□□□ -1.86
PDGFRA-201ENST00000257290 NSD1Q96L73 2696 aaPredicted RBP3.45□□□□□ -1.86
PDGFRA-201ENST00000257290 FBN2P35556 2912 aa3.45□□□□□ -1.86
PDGFRA-201ENST00000257290 KALRNO60229 2985 aa3.44□□□□□ -1.86
PDGFRA-201ENST00000257290 COL6A5A8TX70 2615 aa3.44□□□□□ -1.86
PDGFRA-201ENST00000257290 PDZD2O15018 2839 aa3.43□□□□□ -1.86
PDGFRA-201ENST00000257290 NBEAQ8NFP9 2946 aa3.43□□□□□ -1.86
PDGFRA-201ENST00000257290 KRTAP12-2P59991 146 aa3.43□□□□□ -1.86
PDGFRA-201ENST00000257290 XP32Q5T750 250 aa3.43□□□□□ -1.86
PDGFRA-201ENST00000257290 MAP1AP78559 2803 aaPredicted RBP3.42□□□□□ -1.86
PDGFRA-201ENST00000257290 ZZEF1O43149 2961 aa3.42□□□□□ -1.86
PDGFRA-201ENST00000257290 LOC400499M0QZD8 3231 aa3.42□□□□□ -1.86
PDGFRA-201ENST00000257290 KRTAP1-4P0C5Y4 121 aa3.39□□□□□ -1.87
PDGFRA-201ENST00000257290 STAB1Q9NY15 2570 aa3.39□□□□□ -1.87
PDGFRA-201ENST00000257290 KRTAP12-1P59990 96 aa3.38□□□□□ -1.87
PDGFRA-201ENST00000257290 BSNQ9UPA5 3926 aa3.37□□□□□ -1.87
PDGFRA-201ENST00000257290 NBEAL2Q6ZNJ1 2754 aa3.37□□□□□ -1.87
PDGFRA-201ENST00000257290 A0A1B0GVY2 172 aa3.36□□□□□ -1.87
PDGFRA-201ENST00000257290 TENM4Q6N022 2769 aa3.36□□□□□ -1.87
PDGFRA-201ENST00000257290 NOTCH1P46531 2555 aa3.35□□□□□ -1.87
PDGFRA-201ENST00000257290 KRTAP13-4Q3LI77 160 aa3.35□□□□□ -1.87
PDGFRA-201ENST00000257290 ZFHX4Q86UP3 3567 aa3.34□□□□□ -1.87
PDGFRA-201ENST00000257290 DCHS1Q96JQ0 3298 aa3.34□□□□□ -1.88
PDGFRA-201ENST00000257290 CELSR2Q9HCU4 2923 aa3.34□□□□□ -1.88
PDGFRA-201ENST00000257290 ZANQ9Y493 2812 aa3.33□□□□□ -1.88
PDGFRA-201ENST00000257290 LAMA5O15230 3695 aa3.32□□□□□ -1.88
PDGFRA-201ENST00000257290 RELNP78509 3460 aa3.31□□□□□ -1.88
PDGFRA-201ENST00000257290 NIPBLQ6KC79 2804 aaeCLIP3.31□□□□□ -1.88
PDGFRA-201ENST00000257290 TACC2O95359 2948 aa3.31□□□□□ -1.88
PDGFRA-201ENST00000257290 CFAP47Q6ZTR5 3102 aa3.29□□□□□ -1.88
PDGFRA-201ENST00000257290 ZFHX3Q15911 3703 aa3.29□□□□□ -1.88
PDGFRA-201ENST00000257290 OTOGQ6ZRI0 2925 aa3.28□□□□□ -1.88
PDGFRA-201ENST00000257290 STAB2Q8WWQ8 2551 aa3.28□□□□□ -1.88
PDGFRA-201ENST00000257290 DCHS2Q6V1P9 2916 aa3.28□□□□□ -1.88
PDGFRA-201ENST00000257290 MUC3AQ02505 3323 aa3.27□□□□□ -1.89
PDGFRA-201ENST00000257290 MXRA5Q9NR99 2828 aa3.26□□□□□ -1.89
PDGFRA-201ENST00000257290 NBEAL1Q6ZS30 2694 aa3.26□□□□□ -1.89
PDGFRA-201ENST00000257290 CRYBG3Q68DQ2 2970 aa3.25□□□□□ -1.89
PDGFRA-201ENST00000257290 CSMD1Q96PZ7 3565 aa3.25□□□□□ -1.89
PDGFRA-201ENST00000257290 KRTAP10-6P60371 365 aaPredicted RBP3.25□□□□□ -1.89
PDGFRA-201ENST00000257290 SMG1Q96Q15 3661 aaKnown RBP3.25□□□□□ -1.89
PDGFRA-201ENST00000257290 ASH1LQ9NR48 2969 aaKnown RBP3.24□□□□□ -1.89
PDGFRA-201ENST00000257290 ALMS1Q8TCU4 4167 aa3.23□□□□□ -1.89
PDGFRA-201ENST00000257290 NBPF19A0A087WUL8 3843 aa3.22□□□□□ -1.89
PDGFRA-201ENST00000257290 SPENQ96T58 3664 aaKnown RBP3.22□□□□□ -1.89
PDGFRA-201ENST00000257290 HUWE1Q7Z6Z7 4374 aaKnown RBP3.22□□□□□ -1.89
PDGFRA-201ENST00000257290 KRTAP3-1Q9BYR8 98 aa3.2□□□□□ -1.9
PDGFRA-201ENST00000257290 AKAP9Q99996 3911 aa3.17□□□□□ -1.9
PDGFRA-201ENST00000257290 NF1P21359 2839 aa3.16□□□□□ -1.9
PDGFRA-201ENST00000257290 FBN1P35555 2871 aaKnown RBP3.15□□□□□ -1.91
PDGFRA-201ENST00000257290 CELSR1Q9NYQ6 3014 aa3.14□□□□□ -1.91
PDGFRA-201ENST00000257290 TENM3Q9P273 2699 aa3.14□□□□□ -1.91
PDGFRA-201ENST00000257290 TENM1Q9UKZ4 2725 aa3.14□□□□□ -1.91
PDGFRA-201ENST00000257290 SVEP1Q4LDE5 3571 aa3.14□□□□□ -1.91
PDGFRA-201ENST00000257290 KRTAP3-2Q9BYR7 98 aa3.12□□□□□ -1.91
PDGFRA-201ENST00000257290 VPS13CQ709C8 3753 aa3.11□□□□□ -1.91
PDGFRA-201ENST00000257290 DNAH9Q9NYC9 4486 aa3.11□□□□□ -1.91
PDGFRA-201ENST00000257290 CSMD2Q7Z408 3487 aa3.08□□□□□ -1.92
PDGFRA-201ENST00000257290 TGP01266 2768 aa3.07□□□□□ -1.92
PDGFRA-201ENST00000257290 VWFP04275 2813 aa3.07□□□□□ -1.92
PDGFRA-201ENST00000257290 TENM2Q9NT68 2774 aa3.06□□□□□ -1.92
PDGFRA-201ENST00000257290 KRTAP10-4P60372 401 aaPredicted RBP3.06□□□□□ -1.92
PDGFRA-201ENST00000257290 SRRM2Q9UQ35 2752 aaKnown RBP3.04□□□□□ -1.92
PDGFRA-201ENST00000257290 TRRAPQ9Y4A5 3859 aa3.03□□□□□ -1.92
PDGFRA-201ENST00000257290 MT1HL1P0DM35 61 aa3.02□□□□□ -1.93
PDGFRA-201ENST00000257290 ANK2Q01484 3957 aa3.01□□□□□ -1.93
PDGFRA-201ENST00000257290 ZNF469Q96JG9 3925 aaPredicted RBP3□□□□□ -1.93
PDGFRA-201ENST00000257290 VPS13DQ5THJ4 4388 aa2.99□□□□□ -1.93
PDGFRA-201ENST00000257290 KRTAP10-10P60014 251 aa2.99□□□□□ -1.93
PDGFRA-201ENST00000257290 CMYA5Q8N3K9 4069 aa2.99□□□□□ -1.93
PDGFRA-201ENST00000257290 CUBNO60494 3623 aa2.98□□□□□ -1.93
PDGFRA-201ENST00000257290 DNAH3Q8TD57 4116 aa2.98□□□□□ -1.93
PDGFRA-201ENST00000257290 DNAH10Q8IVF4 4471 aa2.98□□□□□ -1.93
PDGFRA-201ENST00000257290 DNAH17Q9UFH2 4485 aa2.98□□□□□ -1.93
PDGFRA-201ENST00000257290 KRTAP3-3Q9BYR6 98 aa2.97□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms