RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 ASB16-AS1Q495Z4 193 aa6.29□□□□□ -1.4
USP28-201ENST00000003302 RETNLBQ9BQ08 111 aa6.29□□□□□ -1.4
USP28-201ENST00000003302 IGLV5-52A0A0A0MRZ9 124 aa6.29□□□□□ -1.4
USP28-201ENST00000003302 COA5Q86WW8 74 aa6.29□□□□□ -1.4
USP28-201ENST00000003302 KRTAP10-2P60368 255 aa6.28□□□□□ -1.4
USP28-201ENST00000003302 C14orf177Q52M58 125 aa6.27□□□□□ -1.41
USP28-201ENST00000003302 SPAG11AQ6PDA7 123 aa6.27□□□□□ -1.41
USP28-201ENST00000003302 LCA10Q71F78 164 aa6.26□□□□□ -1.41
USP28-201ENST00000003302 PRR15LQ9BU68 103 aa6.26□□□□□ -1.41
USP28-201ENST00000003302 LINC00483Q53H64 154 aa6.26□□□□□ -1.41
USP28-201ENST00000003302 CIRBP-AS1Q8TBR5 109 aa6.26□□□□□ -1.41
USP28-201ENST00000003302 C1orf195Q5TG92 126 aa6.25□□□□□ -1.41
USP28-201ENST00000003302 A0A1B0GVX0 72 aa6.25□□□□□ -1.41
USP28-201ENST00000003302 SACSQ9NZJ4 4579 aa6.25□□□□□ -1.41
USP28-201ENST00000003302 NDUFB1O75438 58 aa6.24□□□□□ -1.41
USP28-201ENST00000003302 PRR26Q8N8Z3 221 aa6.24□□□□□ -1.41
USP28-201ENST00000003302 CHKB-CPT1BH3BT56 60 aa6.23□□□□□ -1.41
USP28-201ENST00000003302 HRES1P13985 223 aa6.23□□□□□ -1.41
USP28-201ENST00000003302 IGLV7-46A0A075B6I9 117 aa6.23□□□□□ -1.41
USP28-201ENST00000003302 ZNF861PO60384 105 aa6.23□□□□□ -1.41
USP28-201ENST00000003302 KMT2CQ8NEZ4 4911 aaKnown RBP6.21□□□□□ -1.41
USP28-201ENST00000003302 SPANXA2-OT1Q8N9U9 137 aa6.21□□□□□ -1.41
USP28-201ENST00000003302 PLAC8Q9NZF1 115 aa6.2□□□□□ -1.42
USP28-201ENST00000003302 NUPR2A6NF83 97 aa6.2□□□□□ -1.42
USP28-201ENST00000003302 KRTAP13-3Q3SY46 172 aa6.2□□□□□ -1.42
USP28-201ENST00000003302 MRPL34Q9BQ48 92 aaKnown RBP6.2□□□□□ -1.42
USP28-201ENST00000003302 SPINK7P58062 85 aa6.19□□□□□ -1.42
USP28-201ENST00000003302 MYCBP2O75592 4640 aa6.19□□□□□ -1.42
USP28-201ENST00000003302 LY6G6CO95867 125 aa6.18□□□□□ -1.42
USP28-201ENST00000003302 KRTAP13-2Q52LG2 175 aa6.18□□□□□ -1.42
USP28-201ENST00000003302 SPTSSBQ8NFR3 76 aa6.18□□□□□ -1.42
USP28-201ENST00000003302 DYNC1H1Q14204 4646 aaKnown RBP6.18□□□□□ -1.42
USP28-201ENST00000003302 LRP1Q07954 4544 aaKnown RBP6.16□□□□□ -1.42
USP28-201ENST00000003302 IGLV7-43P04211 117 aa6.16□□□□□ -1.42
USP28-201ENST00000003302 H3BPC8 53 aa6.14□□□□□ -1.43
USP28-201ENST00000003302 A6NED7 52 aa6.13□□□□□ -1.43
USP28-201ENST00000003302 KRTAP10-1P60331 282 aa6.13□□□□□ -1.43
USP28-201ENST00000003302 PMAIP1Q13794 54 aa6.13□□□□□ -1.43
USP28-201ENST00000003302 C1orf134Q5TEV5 83 aa6.11□□□□□ -1.43
USP28-201ENST00000003302 CDK2AP2O75956 126 aa6.1□□□□□ -1.43
USP28-201ENST00000003302 LOC101927531A0A1B0GV80 90 aa6.1□□□□□ -1.43
USP28-201ENST00000003302 APOBP04114 4563 aaKnown RBP6.1□□□□□ -1.43
USP28-201ENST00000003302 TP53AIP1Q9HCN2 124 aa6.09□□□□□ -1.43
USP28-201ENST00000003302 Q75L30 129 aa6.08□□□□□ -1.44
USP28-201ENST00000003302 LIMD2Q9BT23 127 aa6.08□□□□□ -1.44
USP28-201ENST00000003302 PKHD1L1Q86WI1 4243 aa6.08□□□□□ -1.44
USP28-201ENST00000003302 V9GYY9 64 aa6.08□□□□□ -1.44
USP28-201ENST00000003302 HSPG2P98160 4391 aa6.07□□□□□ -1.44
USP28-201ENST00000003302 KRTAP1-4P0C5Y4 121 aa6.07□□□□□ -1.44
USP28-201ENST00000003302 ZNF706Q9Y5V0 76 aaPredicted RBP6.06□□□□□ -1.44
USP28-201ENST00000003302 LINC01558Q9Y6Z2 57 aa6.05□□□□□ -1.44
USP28-201ENST00000003302 KRTAP16-1A8MUX0 517 aa6.05□□□□□ -1.44
USP28-201ENST00000003302 LPAP08519 4548 aa6.03□□□□□ -1.44
USP28-201ENST00000003302 ADM2Q7Z4H4 148 aa6.02□□□□□ -1.45
USP28-201ENST00000003302 A6NN06 94 aa6.02□□□□□ -1.45
USP28-201ENST00000003302 LINC00313P59037 77 aa6.01□□□□□ -1.45
USP28-201ENST00000003302 SEC61GP60059 68 aa6.01□□□□□ -1.45
USP28-201ENST00000003302 IGKV2D-30A0A075B6S6 120 aa6.01□□□□□ -1.45
USP28-201ENST00000003302 IGKV2-30P06310 120 aa6.01□□□□□ -1.45
USP28-201ENST00000003302 FAT3Q8TDW7 4589 aa5.99□□□□□ -1.45
USP28-201ENST00000003302 FLG2Q5D862 2391 aaPredicted RBP5.99□□□□□ -1.45
USP28-201ENST00000003302 SMR3BP02814 79 aaPredicted RBP5.98□□□□□ -1.45
USP28-201ENST00000003302 CDC42SE1Q9NRR8 79 aa5.98□□□□□ -1.45
USP28-201ENST00000003302 Q6ZSA8 131 aa5.98□□□□□ -1.45
USP28-201ENST00000003302 PRAC1Q96KF2 57 aa5.97□□□□□ -1.45
USP28-201ENST00000003302 Q8N1X5 172 aa5.96□□□□□ -1.46
USP28-201ENST00000003302 DMAC1Q96GE9 116 aa5.96□□□□□ -1.46
USP28-201ENST00000003302 RYR2Q92736 4967 aa5.95□□□□□ -1.46
USP28-201ENST00000003302 SSBP3-AS1Q7Z2R9 100 aa5.95□□□□□ -1.46
USP28-201ENST00000003302 RYR3Q15413 4870 aa5.94□□□□□ -1.46
USP28-201ENST00000003302 SPINK1P00995 79 aa5.94□□□□□ -1.46
USP28-201ENST00000003302 PLA2G1BP04054 148 aaKnown RBP5.94□□□□□ -1.46
USP28-201ENST00000003302 ATP11AUNQ6ZP68 121 aa5.94□□□□□ -1.46
USP28-201ENST00000003302 DMBT1Q9UGM3 2413 aaPredicted RBP5.92□□□□□ -1.46
USP28-201ENST00000003302 RBM12B-AS1Q9P1G2 102 aa5.92□□□□□ -1.46
USP28-201ENST00000003302 KTN1-AS1Q86SY8 53 aa5.91□□□□□ -1.46
USP28-201ENST00000003302 ACYP2P14621 99 aa5.91□□□□□ -1.46
USP28-201ENST00000003302 C9orf92A6NGG3 77 aa5.9□□□□□ -1.47
USP28-201ENST00000003302 FAM229AH3BQW9 127 aa5.89□□□□□ -1.47
USP28-201ENST00000003302 RYR1P21817 5038 aa5.89□□□□□ -1.47
USP28-201ENST00000003302 TNXBP22105 4242 aa5.88□□□□□ -1.47
USP28-201ENST00000003302 C8orf87E5RJ46 101 aa5.87□□□□□ -1.47
USP28-201ENST00000003302 TYMSOSQ8TAI1 123 aa5.87□□□□□ -1.47
USP28-201ENST00000003302 KIAA1109Q2LD37 5005 aa5.85□□□□□ -1.47
USP28-201ENST00000003302 C7orf65Q6ZTY9 151 aa5.85□□□□□ -1.47
USP28-201ENST00000003302 A0A1B0GU69 56 aa5.85□□□□□ -1.47
USP28-201ENST00000003302 KRTAP3-1Q9BYR8 98 aa5.83□□□□□ -1.48
USP28-201ENST00000003302 LRP2P98164 4655 aa5.82□□□□□ -1.48
USP28-201ENST00000003302 ABCA13Q86UQ4 5058 aa5.8□□□□□ -1.48
USP28-201ENST00000003302 KRTAP10-4P60372 401 aaPredicted RBP5.77□□□□□ -1.49
USP28-201ENST00000003302 C4orf48Q5BLP8 95 aa5.76□□□□□ -1.49
USP28-201ENST00000003302 KRTAP17-1Q9BYP8 105 aa5.76□□□□□ -1.49
USP28-201ENST00000003302 LINC00304Q8N9R0 145 aa5.75□□□□□ -1.49
USP28-201ENST00000003302 MIR22HGQ0VDD5 57 aa5.75□□□□□ -1.49
USP28-201ENST00000003302 SPATA8Q6RVD6 105 aa5.75□□□□□ -1.49
USP28-201ENST00000003302 EPPK1P58107 5090 aaKnown RBP5.74□□□□□ -1.49
USP28-201ENST00000003302 H0YAA0 97 aa5.73□□□□□ -1.49
USP28-201ENST00000003302 UQCR11O14957 56 aa5.7□□□□□ -1.5
USP28-201ENST00000003302 KRTAP21-3Q3LHN1 58 aa5.69□□□□□ -1.5
USP28-201ENST00000003302 CRIPTQ9P021 101 aa5.67□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms