RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 C14orf177Q52M58 125 aa2.22□□□□□ -2.05
SCN1A-221ENST00000641996 FAM168BA1KXE4 195 aa2.22□□□□□ -2.05
SCN1A-221ENST00000641996 WWC2-AS2Q96NR7 200 aa2.22□□□□□ -2.05
SCN1A-221ENST00000641996 SPATA8Q6RVD6 105 aa2.22□□□□□ -2.05
SCN1A-221ENST00000641996 G3V318 75 aa2.22□□□□□ -2.05
SCN1A-221ENST00000641996 KRTAP23-1A1A580 65 aa2.21□□□□□ -2.05
SCN1A-221ENST00000641996 C10orf99Q6UWK7 81 aa2.21□□□□□ -2.06
SCN1A-221ENST00000641996 BRD3OSQ6XYD6 125 aa2.21□□□□□ -2.06
SCN1A-221ENST00000641996 ASH1LQ9NR48 2969 aaKnown RBP2.21□□□□□ -2.06
SCN1A-221ENST00000641996 IGLV6-57P01721 117 aa2.21□□□□□ -2.06
SCN1A-221ENST00000641996 KCNQ1DNQ9H478 68 aa2.21□□□□□ -2.06
SCN1A-221ENST00000641996 ZNF861PO60384 105 aa2.21□□□□□ -2.06
SCN1A-221ENST00000641996 PSORS1C2Q9UIG4 136 aa2.21□□□□□ -2.06
SCN1A-221ENST00000641996 MRGPRG-AS1Q2M3A8 158 aa2.2□□□□□ -2.06
SCN1A-221ENST00000641996 DEFB114Q30KQ6 69 aa2.2□□□□□ -2.06
SCN1A-221ENST00000641996 Q96NJ1 140 aa2.2□□□□□ -2.06
SCN1A-221ENST00000641996 DEFB131AP59861 70 aa2.2□□□□□ -2.06
SCN1A-221ENST00000641996 KRTAP4-16G5E9R7 235 aaPredicted RBP2.19□□□□□ -2.06
SCN1A-221ENST00000641996 LINC00612Q8N6U2 182 aa2.19□□□□□ -2.06
SCN1A-221ENST00000641996 LYNX1G3V0Z9 82 aa2.19□□□□□ -2.06
SCN1A-221ENST00000641996 LYNX1P0DP58 116 aa2.19□□□□□ -2.06
SCN1A-221ENST00000641996 ZCCHC13Q8WW36 166 aaKnown RBP2.19□□□□□ -2.06
SCN1A-221ENST00000641996 TRIOO75962 3097 aa2.18□□□□□ -2.06
SCN1A-221ENST00000641996 A0A1B0GU33 70 aa2.18□□□□□ -2.06
SCN1A-221ENST00000641996 OTOGQ6ZRI0 2925 aa2.18□□□□□ -2.06
SCN1A-221ENST00000641996 USMG5Q96IX5 58 aa2.18□□□□□ -2.06
SCN1A-221ENST00000641996 A0A087WTM6 91 aa2.18□□□□□ -2.06
SCN1A-221ENST00000641996 A0A087X002 238 aa2.18□□□□□ -2.06
SCN1A-221ENST00000641996 MRPL34Q9BQ48 92 aaKnown RBP2.18□□□□□ -2.06
SCN1A-221ENST00000641996 IGKV2-24A0A0C4DH68 120 aa2.17□□□□□ -2.06
SCN1A-221ENST00000641996 DEFB131BA0A096LNP1 70 aa2.17□□□□□ -2.06
SCN1A-221ENST00000641996 ADGRG4Q8IZF6 3080 aa2.17□□□□□ -2.06
SCN1A-221ENST00000641996 NBDYA0A0U1RRE5 68 aa2.17□□□□□ -2.06
SCN1A-221ENST00000641996 LAMA1P25391 3075 aa2.16□□□□□ -2.06
SCN1A-221ENST00000641996 PANO1I0J062 215 aa2.16□□□□□ -2.06
SCN1A-221ENST00000641996 COL4A2P08572 1712 aa2.16□□□□□ -2.06
SCN1A-221ENST00000641996 UNQ6190/PRO20217Q6UXQ8 127 aa2.16□□□□□ -2.06
SCN1A-221ENST00000641996 Q5W150 140 aa2.15□□□□□ -2.06
SCN1A-221ENST00000641996 DEFB103AP81534 67 aa2.15□□□□□ -2.06
SCN1A-221ENST00000641996 KRTAP26-1Q6PEX3 210 aa2.15□□□□□ -2.06
SCN1A-221ENST00000641996 PRR34Q9NV39 138 aa2.15□□□□□ -2.06
SCN1A-221ENST00000641996 CENPFP49454 3210 aa2.15□□□□□ -2.06
SCN1A-221ENST00000641996 KLK9Q2XQG4 91 aa2.15□□□□□ -2.07
SCN1A-221ENST00000641996 ALMS1Q8TCU4 4167 aa2.14□□□□□ -2.07
SCN1A-221ENST00000641996 COL7A1Q02388 2944 aa2.14□□□□□ -2.07
SCN1A-221ENST00000641996 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP2.14□□□□□ -2.07
SCN1A-221ENST00000641996 DEFB123Q8N688 67 aa2.13□□□□□ -2.07
SCN1A-221ENST00000641996 DSCR10P59022 87 aa2.13□□□□□ -2.07
SCN1A-221ENST00000641996 C10orf95Q9H7T3 257 aa2.13□□□□□ -2.07
SCN1A-221ENST00000641996 PRO0255Q9UI72 69 aa2.13□□□□□ -2.07
SCN1A-221ENST00000641996 LAMA2P24043 3122 aaKnown RBP2.13□□□□□ -2.07
SCN1A-221ENST00000641996 Q8N1X5 172 aa2.13□□□□□ -2.07
SCN1A-221ENST00000641996 ZZEF1O43149 2961 aa2.13□□□□□ -2.07
SCN1A-221ENST00000641996 DEFB109BQ30KR1 87 aa2.13□□□□□ -2.07
SCN1A-221ENST00000641996 FRYQ5TBA9 3013 aa2.12□□□□□ -2.07
SCN1A-221ENST00000641996 GIG44P09565 113 aaPredicted RBP2.12□□□□□ -2.07
SCN1A-221ENST00000641996 KRTAP11-1Q8IUC1 163 aa2.12□□□□□ -2.07
SCN1A-221ENST00000641996 DMXL1Q9Y485 3027 aa2.12□□□□□ -2.07
SCN1A-221ENST00000641996 DEFB4AO15263 64 aa2.12□□□□□ -2.07
SCN1A-221ENST00000641996 A0A096LNT2 108 aa2.12□□□□□ -2.07
SCN1A-221ENST00000641996 PLAC4Q8WY50 150 aa2.11□□□□□ -2.07
SCN1A-221ENST00000641996 CELSR1Q9NYQ6 3014 aa2.11□□□□□ -2.07
SCN1A-221ENST00000641996 IGLV5-48A0A075B6I7 105 aa2.1□□□□□ -2.07
SCN1A-221ENST00000641996 H3BUA1 57 aa2.1□□□□□ -2.07
SCN1A-221ENST00000641996 PRUNE2Q8WUY3 3088 aa2.09□□□□□ -2.07
SCN1A-221ENST00000641996 H1FX-AS1Q4G0G2 97 aa2.09□□□□□ -2.07
SCN1A-221ENST00000641996 LINC00472Q9H8W2 130 aa2.09□□□□□ -2.07
SCN1A-221ENST00000641996 SPRR4Q96PI1 79 aa2.09□□□□□ -2.08
SCN1A-221ENST00000641996 REV3LO60673 3130 aa2.09□□□□□ -2.08
SCN1A-221ENST00000641996 LCE6AA0A183 80 aa2.08□□□□□ -2.08
SCN1A-221ENST00000641996 H3BUX3 64 aa2.08□□□□□ -2.08
SCN1A-221ENST00000641996 CFAP54Q96N23 3096 aa2.08□□□□□ -2.08
SCN1A-221ENST00000641996 LELP1Q5T871 98 aa2.08□□□□□ -2.08
SCN1A-221ENST00000641996 COL12A1Q99715 3063 aa2.08□□□□□ -2.08
SCN1A-221ENST00000641996 IGFL1Q6UW32 110 aa2.07□□□□□ -2.08
SCN1A-221ENST00000641996 CEP350Q5VT06 3117 aa2.07□□□□□ -2.08
SCN1A-221ENST00000641996 PLAC8Q9NZF1 115 aa2.06□□□□□ -2.08
SCN1A-221ENST00000641996 GVQW2A0A096LPI5 108 aaPredicted RBP2.06□□□□□ -2.08
SCN1A-221ENST00000641996 KRTAP15-1Q3LI76 137 aa2.06□□□□□ -2.08
SCN1A-221ENST00000641996 DEFB124Q8NES8 71 aa2.06□□□□□ -2.08
SCN1A-221ENST00000641996 COL4A4P53420 1690 aaPredicted RBP2.06□□□□□ -2.08
SCN1A-221ENST00000641996 SPACA4Q8TDM5 124 aa2.06□□□□□ -2.08
SCN1A-221ENST00000641996 RPL37P61927 97 aaKnown RBP2.05□□□□□ -2.08
SCN1A-221ENST00000641996 A0A1W2PPR1 153 aa2.05□□□□□ -2.08
SCN1A-221ENST00000641996 DEFB135Q30KP9 77 aa2.05□□□□□ -2.08
SCN1A-221ENST00000641996 COL4A5P29400 1685 aa2.04□□□□□ -2.08
SCN1A-221ENST00000641996 ATMQ13315 3056 aa2.04□□□□□ -2.08
SCN1A-221ENST00000641996 MMP24-AS1A0A0U1RRL7 71 aa2.03□□□□□ -2.08
SCN1A-221ENST00000641996 TPRXLQ17RH7 258 aa2.02□□□□□ -2.09
SCN1A-221ENST00000641996 KRTAP3-3Q9BYR6 98 aa2.02□□□□□ -2.09
SCN1A-221ENST00000641996 KRTAP3-2Q9BYR7 98 aa2.02□□□□□ -2.09
SCN1A-221ENST00000641996 K7EIL1 84 aa2.02□□□□□ -2.09
SCN1A-221ENST00000641996 FBN3Q75N90 2809 aa2.01□□□□□ -2.09
SCN1A-221ENST00000641996 H0YAA0 97 aa2.01□□□□□ -2.09
SCN1A-221ENST00000641996 NBPF19A0A087WUL8 3843 aa2□□□□□ -2.09
SCN1A-221ENST00000641996 PP632Q6XCG6 107 aa2□□□□□ -2.09
SCN1A-221ENST00000641996 SPART-AS1P0CW21 52 aa2□□□□□ -2.09
SCN1A-221ENST00000641996 FREM2Q5SZK8 3169 aa1.99□□□□□ -2.09
SCN1A-221ENST00000641996 EP400Q96L91 3159 aa1.99□□□□□ -2.09
SCN1A-221ENST00000641996 PRO2289Q9P1D8 64 aa1.99□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 71.3 ms