RNA–Protein interactions for RNA: ENST00000636194.1

SCN1A-212, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 8,508 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-212ENST00000636194 M0QZ58 72 aa3.87□□□□□ -1.79
SCN1A-212ENST00000636194 EIF4EBP3O60516 100 aaPredicted RBP3.87□□□□□ -1.79
SCN1A-212ENST00000636194 LINC00310P59036 64 aa3.87□□□□□ -1.79
SCN1A-212ENST00000636194 SPATA8Q6RVD6 105 aa3.87□□□□□ -1.79
SCN1A-212ENST00000636194 CRIP3Q6Q6R5 217 aa3.86□□□□□ -1.79
SCN1A-212ENST00000636194 ANAPC11Q9NYG5 84 aa3.86□□□□□ -1.79
SCN1A-212ENST00000636194 MAP1AP78559 2803 aaPredicted RBP3.86□□□□□ -1.79
SCN1A-212ENST00000636194 LINC01558Q9Y6Z2 57 aa3.85□□□□□ -1.79
SCN1A-212ENST00000636194 RPL37P61927 97 aaKnown RBP3.85□□□□□ -1.79
SCN1A-212ENST00000636194 LINC00612Q8N6U2 182 aa3.85□□□□□ -1.79
SCN1A-212ENST00000636194 ZCCHC13Q8WW36 166 aaKnown RBP3.85□□□□□ -1.79
SCN1A-212ENST00000636194 SMCPP49901 116 aaPredicted RBP3.85□□□□□ -1.79
SCN1A-212ENST00000636194 K7EIL1 84 aa3.84□□□□□ -1.79
SCN1A-212ENST00000636194 C19orf73Q9NVV2 129 aa3.83□□□□□ -1.8
SCN1A-212ENST00000636194 CEP350Q5VT06 3117 aa3.83□□□□□ -1.8
SCN1A-212ENST00000636194 OXTP01178 125 aa3.82□□□□□ -1.8
SCN1A-212ENST00000636194 NDUFAF8A1L188 74 aa3.8□□□□□ -1.8
SCN1A-212ENST00000636194 PRAC1Q96KF2 57 aa3.8□□□□□ -1.8
SCN1A-212ENST00000636194 ASB16-AS1Q495Z4 193 aa3.79□□□□□ -1.8
SCN1A-212ENST00000636194 FP248Q71RG6 208 aaPredicted RBP3.78□□□□□ -1.8
SCN1A-212ENST00000636194 KLK9Q2XQG4 91 aa3.78□□□□□ -1.8
SCN1A-212ENST00000636194 SRCAPQ6ZRS2 3230 aa3.78□□□□□ -1.8
SCN1A-212ENST00000636194 KRTAP10-11P60412 298 aa3.77□□□□□ -1.81
SCN1A-212ENST00000636194 A0A0G2JQZ4 141 aa3.77□□□□□ -1.81
SCN1A-212ENST00000636194 A0A1W2PPR1 153 aa3.77□□□□□ -1.81
SCN1A-212ENST00000636194 CASC10Q5T4H9 136 aa3.77□□□□□ -1.81
SCN1A-212ENST00000636194 OCR1Q9BZK8 76 aa3.76□□□□□ -1.81
SCN1A-212ENST00000636194 ADM2Q7Z4H4 148 aa3.76□□□□□ -1.81
SCN1A-212ENST00000636194 Q8NDZ9 215 aa3.76□□□□□ -1.81
SCN1A-212ENST00000636194 FLNCQ14315 2725 aa3.75□□□□□ -1.81
SCN1A-212ENST00000636194 TENM3Q9P273 2699 aa3.73□□□□□ -1.81
SCN1A-212ENST00000636194 UBR5O95071 2799 aaPredicted RBP3.73□□□□□ -1.81
SCN1A-212ENST00000636194 GIG44P09565 113 aaPredicted RBP3.72□□□□□ -1.81
SCN1A-212ENST00000636194 C10orf95Q9H7T3 257 aa3.71□□□□□ -1.82
SCN1A-212ENST00000636194 Q5W150 140 aa3.7□□□□□ -1.82
SCN1A-212ENST00000636194 DSPP15924 2871 aaKnown RBP3.7□□□□□ -1.82
SCN1A-212ENST00000636194 PANO1I0J062 215 aa3.7□□□□□ -1.82
SCN1A-212ENST00000636194 PLAC8Q9NZF1 115 aa3.69□□□□□ -1.82
SCN1A-212ENST00000636194 DNAH12Q6ZR08 3092 aa3.68□□□□□ -1.82
SCN1A-212ENST00000636194 LAMA2P24043 3122 aaKnown RBP3.68□□□□□ -1.82
SCN1A-212ENST00000636194 TENM1Q9UKZ4 2725 aa3.68□□□□□ -1.82
SCN1A-212ENST00000636194 PCNTO95613 3336 aa3.68□□□□□ -1.82
SCN1A-212ENST00000636194 TRANK1O15050 2925 aa3.68□□□□□ -1.82
SCN1A-212ENST00000636194 NBEAL2Q6ZNJ1 2754 aa3.67□□□□□ -1.82
SCN1A-212ENST00000636194 TNP1P09430 55 aa3.67□□□□□ -1.82
SCN1A-212ENST00000636194 Q6ZR54 194 aa3.67□□□□□ -1.82
SCN1A-212ENST00000636194 EP400Q96L91 3159 aa3.66□□□□□ -1.82
SCN1A-212ENST00000636194 SPRR1BP22528 89 aa3.65□□□□□ -1.83
SCN1A-212ENST00000636194 Q5VV11 94 aa3.65□□□□□ -1.83
SCN1A-212ENST00000636194 CHD9Q3L8U1 2897 aa3.65□□□□□ -1.83
SCN1A-212ENST00000636194 MMP24-AS1A0A0U1RRL7 71 aa3.64□□□□□ -1.83
SCN1A-212ENST00000636194 PP632Q6XCG6 107 aa3.64□□□□□ -1.83
SCN1A-212ENST00000636194 NF1P21359 2839 aa3.64□□□□□ -1.83
SCN1A-212ENST00000636194 ITPR1Q14643 2758 aa3.63□□□□□ -1.83
SCN1A-212ENST00000636194 A8MUU9 505 aa3.63□□□□□ -1.83
SCN1A-212ENST00000636194 KALRNO60229 2985 aa3.62□□□□□ -1.83
SCN1A-212ENST00000636194 TRIOO75962 3097 aa3.61□□□□□ -1.83
SCN1A-212ENST00000636194 TNRC18O15417 2968 aaPredicted RBP3.61□□□□□ -1.83
SCN1A-212ENST00000636194 KRTAP25-1Q3LHN0 102 aa3.6□□□□□ -1.83
SCN1A-212ENST00000636194 C5orf42Q9H799 3197 aa3.6□□□□□ -1.83
SCN1A-212ENST00000636194 LINC00472Q9H8W2 130 aa3.6□□□□□ -1.83
SCN1A-212ENST00000636194 A0A0C4DFX4 3053 aa3.58□□□□□ -1.84
SCN1A-212ENST00000636194 PRO2289Q9P1D8 64 aa3.58□□□□□ -1.84
SCN1A-212ENST00000636194 FRYLO94915 3013 aa3.57□□□□□ -1.84
SCN1A-212ENST00000636194 LRBAP50851 2863 aa3.57□□□□□ -1.84
SCN1A-212ENST00000636194 RPS29P62273 56 aaKnown RBP3.57□□□□□ -1.84
SCN1A-212ENST00000636194 CFAP54Q96N23 3096 aa3.57□□□□□ -1.84
SCN1A-212ENST00000636194 LCE6AA0A183 80 aa3.56□□□□□ -1.84
SCN1A-212ENST00000636194 CRYBG3Q68DQ2 2970 aa3.55□□□□□ -1.84
SCN1A-212ENST00000636194 SPRR1AP35321 89 aa3.54□□□□□ -1.84
SCN1A-212ENST00000636194 CHD7Q9P2D1 2997 aa3.53□□□□□ -1.84
SCN1A-212ENST00000636194 HIVEP1P15822 2718 aa3.53□□□□□ -1.84
SCN1A-212ENST00000636194 FRYQ5TBA9 3013 aa3.52□□□□□ -1.85
SCN1A-212ENST00000636194 KRTAP10-3P60369 221 aa3.52□□□□□ -1.85
SCN1A-212ENST00000636194 KRTAP10-8P60410 259 aa3.51□□□□□ -1.85
SCN1A-212ENST00000636194 Q5XG85 94 aa3.51□□□□□ -1.85
SCN1A-212ENST00000636194 NIPBLQ6KC79 2804 aaeCLIP3.5□□□□□ -1.85
SCN1A-212ENST00000636194 PDZD2O15018 2839 aa3.5□□□□□ -1.85
SCN1A-212ENST00000636194 CELSR2Q9HCU4 2923 aa3.49□□□□□ -1.85
SCN1A-212ENST00000636194 KRTAP26-1Q6PEX3 210 aa3.49□□□□□ -1.85
SCN1A-212ENST00000636194 A0A096LNT2 108 aa3.48□□□□□ -1.85
SCN1A-212ENST00000636194 GOLGB1Q14789 3259 aaKnown RBP3.46□□□□□ -1.86
SCN1A-212ENST00000636194 A0A087X002 238 aa3.45□□□□□ -1.86
SCN1A-212ENST00000636194 KRTAP10-1P60331 282 aa3.45□□□□□ -1.86
SCN1A-212ENST00000636194 ASH1LQ9NR48 2969 aaKnown RBP3.45□□□□□ -1.86
SCN1A-212ENST00000636194 A8MU10 97 aa3.44□□□□□ -1.86
SCN1A-212ENST00000636194 WDFY4Q6ZS81 3184 aa3.42□□□□□ -1.86
SCN1A-212ENST00000636194 TGP01266 2768 aa3.41□□□□□ -1.86
SCN1A-212ENST00000636194 SRRM2Q9UQ35 2752 aaKnown RBP3.41□□□□□ -1.86
SCN1A-212ENST00000636194 COL12A1Q99715 3063 aa3.41□□□□□ -1.86
SCN1A-212ENST00000636194 MGAQ8IWI9 3026 aa3.41□□□□□ -1.86
SCN1A-212ENST00000636194 NOTCH2NLQ7Z3S9 236 aa3.41□□□□□ -1.86
SCN1A-212ENST00000636194 KRTAP10-2P60368 255 aa3.4□□□□□ -1.87
SCN1A-212ENST00000636194 TENM2Q9NT68 2774 aa3.38□□□□□ -1.87
SCN1A-212ENST00000636194 DMXL2Q8TDJ6 3036 aa3.37□□□□□ -1.87
SCN1A-212ENST00000636194 KRTAP1-3Q8IUG1 177 aa3.37□□□□□ -1.87
SCN1A-212ENST00000636194 A6NN06 94 aa3.36□□□□□ -1.87
SCN1A-212ENST00000636194 KRTAP4-16G5E9R7 235 aaPredicted RBP3.36□□□□□ -1.87
SCN1A-212ENST00000636194 KRTAP1-1Q07627 177 aa3.36□□□□□ -1.87
SCN1A-212ENST00000636194 VWFP04275 2813 aa3.36□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms