RNA–Protein interactions for RNA: ENST00000621814.4

CCDC88A-214, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5 BASIC

Gene CCDC88A, Length 3,089 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-214ENST00000621814 DNAH7Q8WXX0 4024 aa8.11□□□□□ -1.11
CCDC88A-214ENST00000621814 RPL37AP61513 92 aaKnown RBP8.11□□□□□ -1.11
CCDC88A-214ENST00000621814 APLNQ9ULZ1 77 aa8.11□□□□□ -1.11
CCDC88A-214ENST00000621814 EPM2AB3EWF7 344 aa8.11□□□□□ -1.11
CCDC88A-214ENST00000621814 WFDC13Q8IUB5 93 aa8.11□□□□□ -1.11
CCDC88A-214ENST00000621814 CNBPP62633 177 aaKnown RBP8.1□□□□□ -1.11
CCDC88A-214ENST00000621814 NDUFC1O43677 76 aa8.09□□□□□ -1.11
CCDC88A-214ENST00000621814 A0A0U1RQV1 116 aa8.08□□□□□ -1.12
CCDC88A-214ENST00000621814 LINC00474Q9P2X8 69 aa8.08□□□□□ -1.12
CCDC88A-214ENST00000621814 A0A1B0GW54 56 aa8.07□□□□□ -1.12
CCDC88A-214ENST00000621814 MDFIQ99750 246 aa8.07□□□□□ -1.12
CCDC88A-214ENST00000621814 PANO1I0J062 215 aa8.06□□□□□ -1.12
CCDC88A-214ENST00000621814 C5orf47Q569G3 176 aa8.05□□□□□ -1.12
CCDC88A-214ENST00000621814 HCG22E2RYF7 251 aa8.05□□□□□ -1.12
CCDC88A-214ENST00000621814 PRR4Q16378 134 aa8.05□□□□□ -1.12
CCDC88A-214ENST00000621814 C14orf177Q52M58 125 aa8.04□□□□□ -1.12
CCDC88A-214ENST00000621814 MPLKIPQ8TAP9 179 aa8.04□□□□□ -1.12
CCDC88A-214ENST00000621814 LRCOL1A6NCL2 159 aa8.03□□□□□ -1.12
CCDC88A-214ENST00000621814 NBDYA0A0U1RRE5 68 aa8.03□□□□□ -1.12
CCDC88A-214ENST00000621814 C9orf163Q8N9P6 203 aa8.02□□□□□ -1.13
CCDC88A-214ENST00000621814 FAM229BQ4G0N7 80 aa8.02□□□□□ -1.13
CCDC88A-214ENST00000621814 FP248Q71RG6 208 aaPredicted RBP8.01□□□□□ -1.13
CCDC88A-214ENST00000621814 IGLV9-49A0A0B4J1Y8 123 aa8.01□□□□□ -1.13
CCDC88A-214ENST00000621814 B9D2Q9BPU9 175 aa8□□□□□ -1.13
CCDC88A-214ENST00000621814 SMIM26A0A096LP01 95 aa7.99□□□□□ -1.13
CCDC88A-214ENST00000621814 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.98□□□□□ -1.13
CCDC88A-214ENST00000621814 H0Y9J4 135 aa7.98□□□□□ -1.13
CCDC88A-214ENST00000621814 PLECQ15149 4684 aaKnown RBP7.97□□□□□ -1.13
CCDC88A-214ENST00000621814 ATP5EP56381 51 aaPredicted RBP7.97□□□□□ -1.13
CCDC88A-214ENST00000621814 IGLV8-61A0A075B6I0 122 aa7.96□□□□□ -1.14
CCDC88A-214ENST00000621814 NUPR2A6NF83 97 aa7.94□□□□□ -1.14
CCDC88A-214ENST00000621814 CASC2Q6XLA1 102 aa7.94□□□□□ -1.14
CCDC88A-214ENST00000621814 LINC00208Q96KT6 92 aa7.94□□□□□ -1.14
CCDC88A-214ENST00000621814 ANAPC11Q9NYG5 84 aa7.94□□□□□ -1.14
CCDC88A-214ENST00000621814 Q6ZRN7 208 aaPredicted RBP7.93□□□□□ -1.14
CCDC88A-214ENST00000621814 LINC00336Q6ZUF6 198 aa7.93□□□□□ -1.14
CCDC88A-214ENST00000621814 MP68P56378 58 aa7.92□□□□□ -1.14
CCDC88A-214ENST00000621814 LCE6AA0A183 80 aa7.9□□□□□ -1.14
CCDC88A-214ENST00000621814 PRR15Q8IV56 129 aa7.9□□□□□ -1.14
CCDC88A-214ENST00000621814 SPRR1BP22528 89 aa7.89□□□□□ -1.15
CCDC88A-214ENST00000621814 C1orf64Q8NEQ6 169 aa7.89□□□□□ -1.15
CCDC88A-214ENST00000621814 LINC00472Q9H8W2 130 aa7.89□□□□□ -1.15
CCDC88A-214ENST00000621814 A8MWP4 228 aa7.89□□□□□ -1.15
CCDC88A-214ENST00000621814 ZCCHC13Q8WW36 166 aaKnown RBP7.89□□□□□ -1.15
CCDC88A-214ENST00000621814 TGP01266 2768 aa7.88□□□□□ -1.15
CCDC88A-214ENST00000621814 STARD9Q9P2P6 4700 aa7.88□□□□□ -1.15
CCDC88A-214ENST00000621814 A0A087WTM6 91 aa7.88□□□□□ -1.15
CCDC88A-214ENST00000621814 SPACA4Q8TDM5 124 aa7.88□□□□□ -1.15
CCDC88A-214ENST00000621814 H0Y9P7 68 aa7.87□□□□□ -1.15
CCDC88A-214ENST00000621814 RTL8CO15255 209 aa7.87□□□□□ -1.15
CCDC88A-214ENST00000621814 KRTAP29-1A8MX34 341 aaPredicted RBP7.86□□□□□ -1.15
CCDC88A-214ENST00000621814 BRK1Q8WUW1 75 aa7.86□□□□□ -1.15
CCDC88A-214ENST00000621814 KRTAP13-1Q8IUC0 172 aa7.86□□□□□ -1.15
CCDC88A-214ENST00000621814 PSORS1C2Q9UIG4 136 aa7.85□□□□□ -1.15
CCDC88A-214ENST00000621814 PKIGQ9Y2B9 76 aa7.85□□□□□ -1.15
CCDC88A-214ENST00000621814 hDV103S1A0JD37 113 aa7.85□□□□□ -1.15
CCDC88A-214ENST00000621814 MOBPQ13875 183 aa7.85□□□□□ -1.15
CCDC88A-214ENST00000621814 NDUFB1O75438 58 aa7.84□□□□□ -1.15
CCDC88A-214ENST00000621814 FRAS1Q86XX4 4008 aa7.84□□□□□ -1.15
CCDC88A-214ENST00000621814 KMT2AQ03164 3969 aa7.84□□□□□ -1.15
CCDC88A-214ENST00000621814 TRAV22A0A0B4J277 110 aa7.82□□□□□ -1.16
CCDC88A-214ENST00000621814 NDUFS5O43920 106 aa7.82□□□□□ -1.16
CCDC88A-214ENST00000621814 IGHV6-1A0A0B4J1U7 121 aa7.82□□□□□ -1.16
CCDC88A-214ENST00000621814 PRKDCP78527 4128 aaKnown RBP7.81□□□□□ -1.16
CCDC88A-214ENST00000621814 MEGF8Q7Z7M0 2845 aa7.81□□□□□ -1.16
CCDC88A-214ENST00000621814 IGLV5-52A0A0A0MRZ9 124 aa7.8□□□□□ -1.16
CCDC88A-214ENST00000621814 MMP24-AS1A0A0U1RRL7 71 aa7.8□□□□□ -1.16
CCDC88A-214ENST00000621814 PSPHP1O15172 72 aa7.8□□□□□ -1.16
CCDC88A-214ENST00000621814 SPINK6Q6UWN8 80 aa7.8□□□□□ -1.16
CCDC88A-214ENST00000621814 LY6G6CO95867 125 aa7.79□□□□□ -1.16
CCDC88A-214ENST00000621814 PCOTHQ58A44 107 aa7.79□□□□□ -1.16
CCDC88A-214ENST00000621814 DYNC2H1Q8NCM8 4307 aaKnown RBP7.78□□□□□ -1.16
CCDC88A-214ENST00000621814 CDK2AP2O75956 126 aa7.77□□□□□ -1.17
CCDC88A-214ENST00000621814 Q96NJ1 140 aa7.77□□□□□ -1.17
CCDC88A-214ENST00000621814 WWC2-AS2Q96NR7 200 aa7.76□□□□□ -1.17
CCDC88A-214ENST00000621814 PRO0628Q9UI54 55 aa7.76□□□□□ -1.17
CCDC88A-214ENST00000621814 ZNF861PO60384 105 aa7.75□□□□□ -1.17
CCDC88A-214ENST00000621814 ZNF706Q9Y5V0 76 aaPredicted RBP7.75□□□□□ -1.17
CCDC88A-214ENST00000621814 C1orf134Q5TEV5 83 aa7.75□□□□□ -1.17
CCDC88A-214ENST00000621814 CIRBP-AS1Q8TBR5 109 aa7.75□□□□□ -1.17
CCDC88A-214ENST00000621814 A0A087X002 238 aa7.73□□□□□ -1.17
CCDC88A-214ENST00000621814 NOTCH2NLQ7Z3S9 236 aa7.73□□□□□ -1.17
CCDC88A-214ENST00000621814 C8orf17Q9NRJ1 99 aa7.73□□□□□ -1.17
CCDC88A-214ENST00000621814 HECTD4Q9Y4D8 3996 aa7.73□□□□□ -1.17
CCDC88A-214ENST00000621814 LINC00483Q53H64 154 aa7.73□□□□□ -1.17
CCDC88A-214ENST00000621814 CYP4F30PQ9H0H9 118 aa7.73□□□□□ -1.17
CCDC88A-214ENST00000621814 FBN3Q75N90 2809 aa7.73□□□□□ -1.17
CCDC88A-214ENST00000621814 Q6ZR54 194 aa7.72□□□□□ -1.17
CCDC88A-214ENST00000621814 DNAH2Q9P225 4427 aa7.72□□□□□ -1.17
CCDC88A-214ENST00000621814 PLAC8Q9NZF1 115 aa7.72□□□□□ -1.17
CCDC88A-214ENST00000621814 VPS13DQ5THJ4 4388 aa7.7□□□□□ -1.18
CCDC88A-214ENST00000621814 A0A1B0GVX0 72 aa7.7□□□□□ -1.18
CCDC88A-214ENST00000621814 H3BPC8 53 aa7.68□□□□□ -1.18
CCDC88A-214ENST00000621814 DNHD1Q96M86 4753 aa7.68□□□□□ -1.18
CCDC88A-214ENST00000621814 DNAH8Q96JB1 4490 aa7.68□□□□□ -1.18
CCDC88A-214ENST00000621814 A8MUN3 132 aa7.67□□□□□ -1.18
CCDC88A-214ENST00000621814 IGLV7-43P04211 117 aa7.67□□□□□ -1.18
CCDC88A-214ENST00000621814 Q1T7F1 81 aa7.67□□□□□ -1.18
CCDC88A-214ENST00000621814 DNAH17Q9UFH2 4485 aa7.66□□□□□ -1.18
CCDC88A-214ENST00000621814 KRTAP10-2P60368 255 aa7.65□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 105.4 ms