RNA–Protein interactions for RNA: ENST00000611659.4

TPM3-223, Transcript of tropomyosin 3, humanhuman

TSL 3 BASIC

Gene TPM3, Length 3,149 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-223ENST00000611659 NDUFB1O75438 58 aa7.6□□□□□ -1.19
TPM3-223ENST00000611659 PRLHP81277 87 aa7.59□□□□□ -1.19
TPM3-223ENST00000611659 CYP4F30PQ9H0H9 118 aa7.59□□□□□ -1.19
TPM3-223ENST00000611659 PMAIP1Q13794 54 aa7.58□□□□□ -1.2
TPM3-223ENST00000611659 C11orf45Q8TAV5 145 aa7.58□□□□□ -1.2
TPM3-223ENST00000611659 IGLV5-37A0A075B6J1 123 aa7.58□□□□□ -1.2
TPM3-223ENST00000611659 B9D2Q9BPU9 175 aa7.57□□□□□ -1.2
TPM3-223ENST00000611659 IGKV2-24A0A0C4DH68 120 aa7.56□□□□□ -1.2
TPM3-223ENST00000611659 DNAH10OSP0CZ25 163 aa7.56□□□□□ -1.2
TPM3-223ENST00000611659 KRTAP10-11P60412 298 aa7.56□□□□□ -1.2
TPM3-223ENST00000611659 KMT2BQ9UMN6 2715 aaPredicted RBP7.56□□□□□ -1.2
TPM3-223ENST00000611659 A8MU10 97 aa7.56□□□□□ -1.2
TPM3-223ENST00000611659 H0Y9P7 68 aa7.55□□□□□ -1.2
TPM3-223ENST00000611659 CASC2Q6XLA1 102 aa7.54□□□□□ -1.2
TPM3-223ENST00000611659 LINC00588Q9Y4M8 146 aa7.53□□□□□ -1.2
TPM3-223ENST00000611659 UBE2AP49459 152 aa7.52□□□□□ -1.21
TPM3-223ENST00000611659 ANK2Q01484 3957 aa7.52□□□□□ -1.21
TPM3-223ENST00000611659 CHKB-CPT1BH3BT56 60 aa7.52□□□□□ -1.21
TPM3-223ENST00000611659 A0A096LNI7 61 aa7.51□□□□□ -1.21
TPM3-223ENST00000611659 COL6A5A8TX70 2615 aa7.51□□□□□ -1.21
TPM3-223ENST00000611659 Q5VV11 94 aa7.51□□□□□ -1.21
TPM3-223ENST00000611659 PRR15LQ9BU68 103 aa7.5□□□□□ -1.21
TPM3-223ENST00000611659 KRTAP29-1A8MX34 341 aaPredicted RBP7.49□□□□□ -1.21
TPM3-223ENST00000611659 NBEAL1Q6ZS30 2694 aa7.48□□□□□ -1.21
TPM3-223ENST00000611659 H0Y9J4 135 aa7.48□□□□□ -1.21
TPM3-223ENST00000611659 SRRM2Q9UQ35 2752 aaKnown RBP7.48□□□□□ -1.21
TPM3-223ENST00000611659 CNBPP62633 177 aaKnown RBP7.47□□□□□ -1.21
TPM3-223ENST00000611659 Q8N9P0 234 aaPredicted RBP7.47□□□□□ -1.21
TPM3-223ENST00000611659 SPTSSBQ8NFR3 76 aa7.47□□□□□ -1.21
TPM3-223ENST00000611659 SPANXA2-OT1Q8N9U9 137 aa7.45□□□□□ -1.22
TPM3-223ENST00000611659 LIMD2Q9BT23 127 aa7.45□□□□□ -1.22
TPM3-223ENST00000611659 IGLV8-61A0A075B6I0 122 aa7.44□□□□□ -1.22
TPM3-223ENST00000611659 A8MWP4 228 aa7.44□□□□□ -1.22
TPM3-223ENST00000611659 PCOTHQ58A44 107 aa7.43□□□□□ -1.22
TPM3-223ENST00000611659 H3BPC8 53 aa7.43□□□□□ -1.22
TPM3-223ENST00000611659 A6NED7 52 aa7.42□□□□□ -1.22
TPM3-223ENST00000611659 PHF5AQ7RTV0 110 aaKnown RBP7.42□□□□□ -1.22
TPM3-223ENST00000611659 C16orf90A8MZG2 172 aa7.42□□□□□ -1.22
TPM3-223ENST00000611659 CHTF8P0CG12 524 aa7.42□□□□□ -1.22
TPM3-223ENST00000611659 KRTAP24-1Q3LI83 254 aa7.42□□□□□ -1.22
TPM3-223ENST00000611659 CSMD3Q7Z407 3707 aa7.41□□□□□ -1.22
TPM3-223ENST00000611659 COA5Q86WW8 74 aa7.41□□□□□ -1.22
TPM3-223ENST00000611659 KRTAP11-1Q8IUC1 163 aa7.41□□□□□ -1.22
TPM3-223ENST00000611659 LINC00472Q9H8W2 130 aa7.41□□□□□ -1.22
TPM3-223ENST00000611659 MGAM2Q2M2H8 2515 aa7.4□□□□□ -1.22
TPM3-223ENST00000611659 C9orf163Q8N9P6 203 aa7.4□□□□□ -1.22
TPM3-223ENST00000611659 MMP24-AS1A0A0U1RRL7 71 aa7.37□□□□□ -1.23
TPM3-223ENST00000611659 LCA10Q71F78 164 aa7.36□□□□□ -1.23
TPM3-223ENST00000611659 SPAG11AQ6PDA7 123 aa7.36□□□□□ -1.23
TPM3-223ENST00000611659 NDUFS5O43920 106 aa7.36□□□□□ -1.23
TPM3-223ENST00000611659 IGLV7-46A0A075B6I9 117 aa7.35□□□□□ -1.23
TPM3-223ENST00000611659 KRTAP1-5Q9BYS1 174 aa7.35□□□□□ -1.23
TPM3-223ENST00000611659 IGLV9-49A0A0B4J1Y8 123 aa7.34□□□□□ -1.23
TPM3-223ENST00000611659 Q75L30 129 aa7.34□□□□□ -1.23
TPM3-223ENST00000611659 TENM2Q9NT68 2774 aa7.34□□□□□ -1.23
TPM3-223ENST00000611659 CD164Q04900 197 aa7.33□□□□□ -1.24
TPM3-223ENST00000611659 KTN1-AS1Q86SY8 53 aa7.32□□□□□ -1.24
TPM3-223ENST00000611659 STAB2Q8WWQ8 2551 aa7.32□□□□□ -1.24
TPM3-223ENST00000611659 DNAH1Q9P2D7 4330 aa7.32□□□□□ -1.24
TPM3-223ENST00000611659 SPRR1BP22528 89 aa7.32□□□□□ -1.24
TPM3-223ENST00000611659 DNAH10Q8IVF4 4471 aa7.32□□□□□ -1.24
TPM3-223ENST00000611659 ATP11AUNQ6ZP68 121 aa7.31□□□□□ -1.24
TPM3-223ENST00000611659 LOC101927531A0A1B0GV80 90 aa7.3□□□□□ -1.24
TPM3-223ENST00000611659 CMYA5Q8N3K9 4069 aa7.3□□□□□ -1.24
TPM3-223ENST00000611659 LYSTQ99698 3801 aa7.3□□□□□ -1.24
TPM3-223ENST00000611659 IGHV6-1A0A0B4J1U7 121 aa7.3□□□□□ -1.24
TPM3-223ENST00000611659 COL7A1Q02388 2944 aa7.29□□□□□ -1.24
TPM3-223ENST00000611659 UBE2DNLQ8IWF7 75 aa7.29□□□□□ -1.24
TPM3-223ENST00000611659 TP53AIP1Q9HCN2 124 aa7.27□□□□□ -1.25
TPM3-223ENST00000611659 C8orf17Q9NRJ1 99 aa7.27□□□□□ -1.25
TPM3-223ENST00000611659 CDC42SE1Q9NRR8 79 aa7.26□□□□□ -1.25
TPM3-223ENST00000611659 RBM12B-AS1Q9P1G2 102 aa7.26□□□□□ -1.25
TPM3-223ENST00000611659 MOBPQ13875 183 aa7.25□□□□□ -1.25
TPM3-223ENST00000611659 Q96NJ1 140 aa7.25□□□□□ -1.25
TPM3-223ENST00000611659 CDK2AP2O75956 126 aa7.25□□□□□ -1.25
TPM3-223ENST00000611659 LINC01558Q9Y6Z2 57 aa7.24□□□□□ -1.25
TPM3-223ENST00000611659 PANO1I0J062 215 aa7.24□□□□□ -1.25
TPM3-223ENST00000611659 K7EIL1 84 aa7.24□□□□□ -1.25
TPM3-223ENST00000611659 A6NN06 94 aa7.23□□□□□ -1.25
TPM3-223ENST00000611659 HRES1P13985 223 aa7.23□□□□□ -1.25
TPM3-223ENST00000611659 SPINK7P58062 85 aa7.23□□□□□ -1.25
TPM3-223ENST00000611659 C14orf177Q52M58 125 aa7.23□□□□□ -1.25
TPM3-223ENST00000611659 HUWE1Q7Z6Z7 4374 aaKnown RBP7.22□□□□□ -1.25
TPM3-223ENST00000611659 Q6ZR54 194 aa7.21□□□□□ -1.25
TPM3-223ENST00000611659 A0A1B0GVX0 72 aa7.21□□□□□ -1.26
TPM3-223ENST00000611659 A0A087X002 238 aa7.2□□□□□ -1.26
TPM3-223ENST00000611659 ASB16-AS1Q495Z4 193 aa7.2□□□□□ -1.26
TPM3-223ENST00000611659 NOTCH2NLQ7Z3S9 236 aa7.2□□□□□ -1.26
TPM3-223ENST00000611659 MRPL34Q9BQ48 92 aaKnown RBP7.2□□□□□ -1.26
TPM3-223ENST00000611659 ANAPC11Q9NYG5 84 aa7.2□□□□□ -1.26
TPM3-223ENST00000611659 PRR26Q8N8Z3 221 aa7.18□□□□□ -1.26
TPM3-223ENST00000611659 SPINK6Q6UWN8 80 aa7.18□□□□□ -1.26
TPM3-223ENST00000611659 KRTAP13-1Q8IUC0 172 aa7.18□□□□□ -1.26
TPM3-223ENST00000611659 DNAH9Q9NYC9 4486 aa7.17□□□□□ -1.26
TPM3-223ENST00000611659 PLAC8Q9NZF1 115 aa7.17□□□□□ -1.26
TPM3-223ENST00000611659 C7orf65Q6ZTY9 151 aa7.16□□□□□ -1.26
TPM3-223ENST00000611659 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.15□□□□□ -1.27
TPM3-223ENST00000611659 DNAH3Q8TD57 4116 aa7.14□□□□□ -1.27
TPM3-223ENST00000611659 MDFIQ99750 246 aa7.12□□□□□ -1.27
TPM3-223ENST00000611659 Q5W150 140 aa7.12□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms