RNA–Protein interactions for RNA: ENST00000609587.1

SMCHD1-213, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

Gene SMCHD1, Length 460 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-213ENST00000609587 SPTBN2O15020 2390 aa1.06□□□□□ -2.24
SMCHD1-213ENST00000609587 TPRP12270 2363 aaKnown RBP1.06□□□□□ -2.24
SMCHD1-213ENST00000609587 DEFB130BP0DP73 79 aa1.05□□□□□ -2.24
SMCHD1-213ENST00000609587 DEFB130AP0DP74 79 aa1.05□□□□□ -2.24
SMCHD1-213ENST00000609587 PKDREJQ9NTG1 2253 aa1.04□□□□□ -2.24
SMCHD1-213ENST00000609587 GVINP1Q7Z2Y8 2422 aa1.04□□□□□ -2.24
SMCHD1-213ENST00000609587 SPRR1BP22528 89 aa1.04□□□□□ -2.24
SMCHD1-213ENST00000609587 WNK2Q9Y3S1 2297 aa1.04□□□□□ -2.24
SMCHD1-213ENST00000609587 SPTBN1Q01082 2364 aaKnown RBP1.04□□□□□ -2.24
SMCHD1-213ENST00000609587 TRANK1O15050 2925 aa1.03□□□□□ -2.24
SMCHD1-213ENST00000609587 CELSR2Q9HCU4 2923 aa1.03□□□□□ -2.24
SMCHD1-213ENST00000609587 IAPPP10997 89 aa1.03□□□□□ -2.24
SMCHD1-213ENST00000609587 DEFB105AQ8NG35 78 aa1.03□□□□□ -2.24
SMCHD1-213ENST00000609587 WFDC13Q8IUB5 93 aa1.02□□□□□ -2.25
SMCHD1-213ENST00000609587 KNL1Q8NG31 2342 aa1.02□□□□□ -2.25
SMCHD1-213ENST00000609587 PCNX1Q96RV3 2341 aa1.02□□□□□ -2.25
SMCHD1-213ENST00000609587 ZNF292O60281 2723 aa1.02□□□□□ -2.25
SMCHD1-213ENST00000609587 POLQO75417 2590 aa1.02□□□□□ -2.25
SMCHD1-213ENST00000609587 A0A0C4DFX4 3053 aa1.01□□□□□ -2.25
SMCHD1-213ENST00000609587 CHD9Q3L8U1 2897 aa1.01□□□□□ -2.25
SMCHD1-213ENST00000609587 IGLV5-48A0A075B6I7 105 aa1.01□□□□□ -2.25
SMCHD1-213ENST00000609587 APLNQ9ULZ1 77 aa1.01□□□□□ -2.25
SMCHD1-213ENST00000609587 PRRC2CQ9Y520 2896 aaKnown RBP0.99□□□□□ -2.25
SMCHD1-213ENST00000609587 ABCA12Q86UK0 2595 aa0.98□□□□□ -2.25
SMCHD1-213ENST00000609587 WT1-ASQ06250 92 aa0.98□□□□□ -2.25
SMCHD1-213ENST00000609587 MUC16Q8WXI7 14507 aa0.98□□□□□ -2.25
SMCHD1-213ENST00000609587 TTC28Q96AY4 2481 aa0.98□□□□□ -2.25
SMCHD1-213ENST00000609587 AHNAK2Q8IVF2 5795 aa0.97□□□□□ -2.25
SMCHD1-213ENST00000609587 POLR2KP53803 58 aaKnown RBP0.96□□□□□ -2.26
SMCHD1-213ENST00000609587 CSPG4Q6UVK1 2322 aa0.96□□□□□ -2.26
SMCHD1-213ENST00000609587 F8P00451 2351 aa0.96□□□□□ -2.26
SMCHD1-213ENST00000609587 ABCA2Q9BZC7 2435 aa0.95□□□□□ -2.26
SMCHD1-213ENST00000609587 CSMD3Q7Z407 3707 aa0.95□□□□□ -2.26
SMCHD1-213ENST00000609587 KLK9Q2XQG4 91 aa0.95□□□□□ -2.26
SMCHD1-213ENST00000609587 MMP24-AS1A0A0U1RRL7 71 aa0.94□□□□□ -2.26
SMCHD1-213ENST00000609587 S4R3F8 94 aa0.94□□□□□ -2.26
SMCHD1-213ENST00000609587 WFDC10BQ8IUB3 73 aa0.93□□□□□ -2.26
SMCHD1-213ENST00000609587 ANK2Q01484 3957 aa0.92□□□□□ -2.26
SMCHD1-213ENST00000609587 ATRQ13535 2644 aa0.91□□□□□ -2.26
SMCHD1-213ENST00000609587 AKAP13Q12802 2813 aa0.91□□□□□ -2.26
SMCHD1-213ENST00000609587 DEFB131AP59861 70 aa0.91□□□□□ -2.26
SMCHD1-213ENST00000609587 KAAG1Q9UBP8 84 aa0.91□□□□□ -2.26
SMCHD1-213ENST00000609587 BDP1A6H8Y1 2624 aa0.91□□□□□ -2.26
SMCHD1-213ENST00000609587 CHD6Q8TD26 2715 aa0.91□□□□□ -2.26
SMCHD1-213ENST00000609587 PIEZO1Q92508 2521 aa0.9□□□□□ -2.26
SMCHD1-213ENST00000609587 CELSR1Q9NYQ6 3014 aa0.9□□□□□ -2.27
SMCHD1-213ENST00000609587 TENM4Q6N022 2769 aa0.9□□□□□ -2.27
SMCHD1-213ENST00000609587 H3BUA1 57 aa0.9□□□□□ -2.27
SMCHD1-213ENST00000609587 RPL39P62891 51 aaKnown RBP0.9□□□□□ -2.27
SMCHD1-213ENST00000609587 ARHGAP5-AS1Q96IT6 56 aa0.9□□□□□ -2.27
SMCHD1-213ENST00000609587 VWFP04275 2813 aa0.9□□□□□ -2.27
SMCHD1-213ENST00000609587 OTOGQ6ZRI0 2925 aa0.89□□□□□ -2.27
SMCHD1-213ENST00000609587 CEP290O15078 2479 aa0.88□□□□□ -2.27
SMCHD1-213ENST00000609587 HECTD1Q9ULT8 2610 aa0.88□□□□□ -2.27
SMCHD1-213ENST00000609587 AKAP6Q13023 2319 aa0.87□□□□□ -2.27
SMCHD1-213ENST00000609587 RPL39LQ96EH5 51 aaKnown RBP0.87□□□□□ -2.27
SMCHD1-213ENST00000609587 CHD7Q9P2D1 2997 aa0.87□□□□□ -2.27
SMCHD1-213ENST00000609587 PRLHP81277 87 aa0.86□□□□□ -2.27
SMCHD1-213ENST00000609587 DEFB109BQ30KR1 87 aa0.86□□□□□ -2.27
SMCHD1-213ENST00000609587 LINC01590Q5TEZ4 76 aa0.86□□□□□ -2.27
SMCHD1-213ENST00000609587 FBN2P35556 2912 aa0.86□□□□□ -2.27
SMCHD1-213ENST00000609587 SPTA1P02549 2419 aa0.85□□□□□ -2.27
SMCHD1-213ENST00000609587 PRKDCP78527 4128 aaKnown RBP0.85□□□□□ -2.27
SMCHD1-213ENST00000609587 CLPSL2Q6UWE3 100 aa0.85□□□□□ -2.27
SMCHD1-213ENST00000609587 PKD1L2Q7Z442 2459 aa0.84□□□□□ -2.27
SMCHD1-213ENST00000609587 SRRM2Q9UQ35 2752 aaKnown RBP0.84□□□□□ -2.27
SMCHD1-213ENST00000609587 DEFB106AQ8N104 65 aa0.84□□□□□ -2.27
SMCHD1-213ENST00000609587 TNRC18O15417 2968 aaPredicted RBP0.84□□□□□ -2.28
SMCHD1-213ENST00000609587 EP300Q09472 2414 aaPredicted RBP0.83□□□□□ -2.28
SMCHD1-213ENST00000609587 SMR3AQ99954 134 aa0.83□□□□□ -2.28
SMCHD1-213ENST00000609587 UBR5O95071 2799 aaPredicted RBP0.83□□□□□ -2.28
SMCHD1-213ENST00000609587 DNAH11Q96DT5 4516 aa0.82□□□□□ -2.28
SMCHD1-213ENST00000609587 TNXBP22105 4242 aa0.82□□□□□ -2.28
SMCHD1-213ENST00000609587 NOTCH1P46531 2555 aa0.82□□□□□ -2.28
SMCHD1-213ENST00000609587 SETD2Q9BYW2 2564 aaPredicted RBP0.82□□□□□ -2.28
SMCHD1-213ENST00000609587 PDZD2O15018 2839 aa0.82□□□□□ -2.28
SMCHD1-213ENST00000609587 BSNQ9UPA5 3926 aa0.81□□□□□ -2.28
SMCHD1-213ENST00000609587 M0QY20 66 aa0.81□□□□□ -2.28
SMCHD1-213ENST00000609587 KRTAP2-3P0C7H8 128 aa0.81□□□□□ -2.28
SMCHD1-213ENST00000609587 KRTAP2-4Q9BYR9 128 aa0.81□□□□□ -2.28
SMCHD1-213ENST00000609587 KRTAP2-1Q9BYU5 128 aa0.81□□□□□ -2.28
SMCHD1-213ENST00000609587 CREBBPQ92793 2442 aa0.81□□□□□ -2.28
SMCHD1-213ENST00000609587 CHD8Q9HCK8 2581 aa0.8□□□□□ -2.28
SMCHD1-213ENST00000609587 FRAS1Q86XX4 4008 aa0.8□□□□□ -2.28
SMCHD1-213ENST00000609587 APCP25054 2843 aa0.79□□□□□ -2.28
SMCHD1-213ENST00000609587 LEAP2Q969E1 77 aa0.79□□□□□ -2.28
SMCHD1-213ENST00000609587 TTTY10Q9BZA0 68 aa0.79□□□□□ -2.28
SMCHD1-213ENST00000609587 NOP10Q9NPE3 64 aaKnown RBP0.79□□□□□ -2.28
SMCHD1-213ENST00000609587 WNK1Q9H4A3 2382 aa0.79□□□□□ -2.28
SMCHD1-213ENST00000609587 FAT2Q9NYQ8 4349 aa0.79□□□□□ -2.28
SMCHD1-213ENST00000609587 MAP1BP46821 2468 aaKnown RBP0.78□□□□□ -2.28
SMCHD1-213ENST00000609587 ZNF469Q96JG9 3925 aaPredicted RBP0.78□□□□□ -2.28
SMCHD1-213ENST00000609587 A8MTW9 85 aa0.78□□□□□ -2.28
SMCHD1-213ENST00000609587 NBASA2RRP1 2371 aa0.78□□□□□ -2.28
SMCHD1-213ENST00000609587 NAV2Q8IVL1 2488 aa0.78□□□□□ -2.28
SMCHD1-213ENST00000609587 MYCBP2O75592 4640 aa0.77□□□□□ -2.29
SMCHD1-213ENST00000609587 TENM3Q9P273 2699 aa0.76□□□□□ -2.29
SMCHD1-213ENST00000609587 NCOR1O75376 2440 aa0.76□□□□□ -2.29
SMCHD1-213ENST00000609587 KRTAP19-3Q7Z4W3 81 aa0.76□□□□□ -2.29
SMCHD1-213ENST00000609587 SACSQ9NZJ4 4579 aa0.76□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms