RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 TRAV13-2A0A0B4J235 113 aa4.09□□□□□ -1.75
CUX1-219ENST00000606749 NHP2Q9NX24 153 aaKnown RBP4.08□□□□□ -1.76
CUX1-219ENST00000606749 SNRPEP62304 92 aaKnown RBP4.07□□□□□ -1.76
CUX1-219ENST00000606749 LINC00575Q6W349 94 aa4.07□□□□□ -1.76
CUX1-219ENST00000606749 TCL1BO95988 128 aa4.06□□□□□ -1.76
CUX1-219ENST00000606749 RPL37P61927 97 aaKnown RBP4.06□□□□□ -1.76
CUX1-219ENST00000606749 VAMP3Q15836 100 aa4.06□□□□□ -1.76
CUX1-219ENST00000606749 CRCT1Q9UGL9 99 aa4.06□□□□□ -1.76
CUX1-219ENST00000606749 hADV29S1A0JD25 119 aa4.05□□□□□ -1.76
CUX1-219ENST00000606749 CFC1BP0CG36 223 aa4.05□□□□□ -1.76
CUX1-219ENST00000606749 F8WEM9 126 aa4.04□□□□□ -1.76
CUX1-219ENST00000606749 Q6ZQY7 126 aa4.04□□□□□ -1.76
CUX1-219ENST00000606749 FSIP2Q5CZC0 6907 aa4.03□□□□□ -1.76
CUX1-219ENST00000606749 KRTAP10-6P60371 365 aaPredicted RBP4.03□□□□□ -1.76
CUX1-219ENST00000606749 OCIAD2Q56VL3 154 aa4.03□□□□□ -1.76
CUX1-219ENST00000606749 Q6JHZ5 121 aa4.03□□□□□ -1.76
CUX1-219ENST00000606749 TRBV7-7A0A0K0K1E9 115 aa4.02□□□□□ -1.77
CUX1-219ENST00000606749 HSBP1L1C9JCN9 74 aa4.02□□□□□ -1.77
CUX1-219ENST00000606749 IGFL1Q6UW32 110 aa4.02□□□□□ -1.77
CUX1-219ENST00000606749 HIST3H2BBQ8N257 126 aa4.02□□□□□ -1.77
CUX1-219ENST00000606749 HIST1H2BLQ99880 126 aa4.02□□□□□ -1.77
CUX1-219ENST00000606749 S100A2P29034 98 aa4.01□□□□□ -1.77
CUX1-219ENST00000606749 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP4.01□□□□□ -1.77
CUX1-219ENST00000606749 CLEC2BQ92478 149 aa4.01□□□□□ -1.77
CUX1-219ENST00000606749 M0R2T5 61 aa4□□□□□ -1.77
CUX1-219ENST00000606749 COX6B2Q6YFQ2 88 aa4□□□□□ -1.77
CUX1-219ENST00000606749 C12orf57Q99622 126 aa4□□□□□ -1.77
CUX1-219ENST00000606749 BVES-AS1Q5T3Y7 98 aa3.99□□□□□ -1.77
CUX1-219ENST00000606749 Q75L30 129 aa3.99□□□□□ -1.77
CUX1-219ENST00000606749 PPDPFLQ8WWR9 84 aa3.99□□□□□ -1.77
CUX1-219ENST00000606749 OBSCN-AS1Q96MR7 158 aa3.99□□□□□ -1.77
CUX1-219ENST00000606749 HIST1H4GQ99525 98 aa3.99□□□□□ -1.77
CUX1-219ENST00000606749 SNHG12Q9BXW3 62 aa3.99□□□□□ -1.77
CUX1-219ENST00000606749 ATP11AUNQ6ZP68 121 aa3.98□□□□□ -1.77
CUX1-219ENST00000606749 H3BUT2 72 aa3.97□□□□□ -1.77
CUX1-219ENST00000606749 LST1O00453 97 aa3.97□□□□□ -1.77
CUX1-219ENST00000606749 FLGP20930 4061 aaPredicted RBP3.96□□□□□ -1.77
CUX1-219ENST00000606749 SCGB1D1O95968 90 aa3.96□□□□□ -1.78
CUX1-219ENST00000606749 S100A6P06703 90 aa3.96□□□□□ -1.78
CUX1-219ENST00000606749 CFC1P0CG37 223 aa3.96□□□□□ -1.78
CUX1-219ENST00000606749 COX8AP10176 69 aa3.96□□□□□ -1.78
CUX1-219ENST00000606749 DLEU1O43261 78 aa3.95□□□□□ -1.78
CUX1-219ENST00000606749 Q6Q795 121 aa3.95□□□□□ -1.78
CUX1-219ENST00000606749 Q96NJ1 140 aa3.95□□□□□ -1.78
CUX1-219ENST00000606749 H0YGX0 51 aa3.94□□□□□ -1.78
CUX1-219ENST00000606749 SNCGO76070 127 aa3.94□□□□□ -1.78
CUX1-219ENST00000606749 NDUFV3P56181 108 aaKnown RBP3.94□□□□□ -1.78
CUX1-219ENST00000606749 TEN1Q86WV5 123 aa3.94□□□□□ -1.78
CUX1-219ENST00000606749 FAM218AQ96MZ4 157 aa3.94□□□□□ -1.78
CUX1-219ENST00000606749 RAB37Q96AX2 223 aa3.93□□□□□ -1.78
CUX1-219ENST00000606749 C14orf144Q96I85 54 aa3.93□□□□□ -1.78
CUX1-219ENST00000606749 C20orf166-AS1Q96NR2 134 aa3.93□□□□□ -1.78
CUX1-219ENST00000606749 SS18L2Q9UHA2 77 aa3.93□□□□□ -1.78
CUX1-219ENST00000606749 A0A0B4J2C4 111 aa3.92□□□□□ -1.78
CUX1-219ENST00000606749 A8MUU9 505 aa3.92□□□□□ -1.78
CUX1-219ENST00000606749 S100A1P23297 94 aa3.92□□□□□ -1.78
CUX1-219ENST00000606749 LCE3BQ5TA77 95 aa3.92□□□□□ -1.78
CUX1-219ENST00000606749 HIGD1BQ9P298 99 aa3.92□□□□□ -1.78
CUX1-219ENST00000606749 A0A087WSZ3 146 aa3.91□□□□□ -1.78
CUX1-219ENST00000606749 H3BMG7 143 aa3.91□□□□□ -1.78
CUX1-219ENST00000606749 C2orf91Q6ZV80 131 aa3.9□□□□□ -1.79
CUX1-219ENST00000606749 KRTAP9-9Q9BYP9 154 aa3.9□□□□□ -1.79
CUX1-219ENST00000606749 KRTAP9-4Q9BYQ2 154 aa3.9□□□□□ -1.79
CUX1-219ENST00000606749 PAM16Q9Y3D7 125 aa3.9□□□□□ -1.79
CUX1-219ENST00000606749 A0A1B0GX51 115 aa3.89□□□□□ -1.79
CUX1-219ENST00000606749 A0A1W2PNM2 257 aa3.89□□□□□ -1.79
CUX1-219ENST00000606749 FABP2P12104 132 aa3.89□□□□□ -1.79
CUX1-219ENST00000606749 SPATA45Q537H7 98 aa3.89□□□□□ -1.79
CUX1-219ENST00000606749 CEND1Q8N111 149 aa3.89□□□□□ -1.79
CUX1-219ENST00000606749 PRO1854Q9UHT4 67 aa3.89□□□□□ -1.79
CUX1-219ENST00000606749 TRBV20-1A0A075B6N2 111 aa3.88□□□□□ -1.79
CUX1-219ENST00000606749 H3BS24 57 aa3.88□□□□□ -1.79
CUX1-219ENST00000606749 DSCR10P59022 87 aa3.88□□□□□ -1.79
CUX1-219ENST00000606749 KRTAP9-8Q9BYQ0 159 aa3.88□□□□□ -1.79
CUX1-219ENST00000606749 KRTAP16-1A8MUX0 517 aa3.87□□□□□ -1.79
CUX1-219ENST00000606749 LINC00313P59037 77 aa3.87□□□□□ -1.79
CUX1-219ENST00000606749 VAMP8Q9BV40 100 aa3.87□□□□□ -1.79
CUX1-219ENST00000606749 KRTAP4-8A0A0G2JLE6 195 aa3.86□□□□□ -1.79
CUX1-219ENST00000606749 TRIAP1O43715 76 aa3.86□□□□□ -1.79
CUX1-219ENST00000606749 FXYD2P54710 66 aa3.86□□□□□ -1.79
CUX1-219ENST00000606749 ANKRD29Q8N6D5 301 aa3.86□□□□□ -1.79
CUX1-219ENST00000606749 TRBV7-4A0A0J9YYF1 115 aa3.85□□□□□ -1.79
CUX1-219ENST00000606749 IGKV4-1P06312 121 aa3.85□□□□□ -1.79
CUX1-219ENST00000606749 SIGMAR1Q99720 223 aa3.85□□□□□ -1.79
CUX1-219ENST00000606749 H3BQ85 93 aa3.84□□□□□ -1.79
CUX1-219ENST00000606749 NOTCH2NLQ7Z3S9 236 aa3.84□□□□□ -1.79
CUX1-219ENST00000606749 KRTAP4-12Q9BQ66 201 aa3.84□□□□□ -1.79
CUX1-219ENST00000606749 ORMDL1Q9P0S3 153 aa3.84□□□□□ -1.79
CUX1-219ENST00000606749 TMEM256-PLSCR3K7ERE1 68 aa3.83□□□□□ -1.8
CUX1-219ENST00000606749 DNAL4O96015 105 aa3.83□□□□□ -1.8
CUX1-219ENST00000606749 DEFB116Q30KQ4 102 aa3.83□□□□□ -1.8
CUX1-219ENST00000606749 LINC00472Q9H8W2 130 aa3.83□□□□□ -1.8
CUX1-219ENST00000606749 A0A1B0GV72 72 aa3.82□□□□□ -1.8
CUX1-219ENST00000606749 PSMB2P49721 201 aa3.82□□□□□ -1.8
CUX1-219ENST00000606749 K7ERJ3 54 aa3.81□□□□□ -1.8
CUX1-219ENST00000606749 CCKP06307 115 aa3.81□□□□□ -1.8
CUX1-219ENST00000606749 COX6CP09669 75 aa3.81□□□□□ -1.8
CUX1-219ENST00000606749 HRES1P13985 223 aa3.81□□□□□ -1.8
CUX1-219ENST00000606749 MPLKIPQ8TAP9 179 aa3.81□□□□□ -1.8
CUX1-219ENST00000606749 IGHV6-1A0A0B4J1U7 121 aa3.8□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms