RNA–Protein interactions for RNA: ENST00000602574.5

COMMD3-215, Transcript of COMM domain containing 3, humanhuman

TSL 1 (best)

Gene COMMD3, Length 2,290 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD3-215ENST00000602574 Q6ZSA8 131 aa5.08□□□□□ -1.6
COMMD3-215ENST00000602574 AKAP6Q13023 2319 aa5.08□□□□□ -1.6
COMMD3-215ENST00000602574 SMG1Q96Q15 3661 aaKnown RBP5.07□□□□□ -1.6
COMMD3-215ENST00000602574 ADGRG4Q8IZF6 3080 aa5.07□□□□□ -1.6
COMMD3-215ENST00000602574 LINC01556Q5JQF7 62 aa5.07□□□□□ -1.6
COMMD3-215ENST00000602574 LCE2AQ5TA79 106 aaPredicted RBP5.07□□□□□ -1.6
COMMD3-215ENST00000602574 ASPMQ8IZT6 3477 aa5.05□□□□□ -1.6
COMMD3-215ENST00000602574 MAPK1IP1LQ8NDC0 245 aa5.05□□□□□ -1.6
COMMD3-215ENST00000602574 LRBAP50851 2863 aa5.04□□□□□ -1.6
COMMD3-215ENST00000602574 CSPG4Q6UVK1 2322 aa5.03□□□□□ -1.6
COMMD3-215ENST00000602574 TPRXLQ17RH7 258 aa5.03□□□□□ -1.6
COMMD3-215ENST00000602574 AKAP13Q12802 2813 aa5.03□□□□□ -1.6
COMMD3-215ENST00000602574 IGKV2-30P06310 120 aa5.03□□□□□ -1.6
COMMD3-215ENST00000602574 DEFB135Q30KP9 77 aa5.02□□□□□ -1.61
COMMD3-215ENST00000602574 ZFHX4Q86UP3 3567 aa5.02□□□□□ -1.61
COMMD3-215ENST00000602574 KRTAP1-3Q8IUG1 177 aa5.02□□□□□ -1.61
COMMD3-215ENST00000602574 CRIPTQ9P021 101 aa5.02□□□□□ -1.61
COMMD3-215ENST00000602574 CREBBPQ92793 2442 aa5.01□□□□□ -1.61
COMMD3-215ENST00000602574 K7EIL1 84 aa5.01□□□□□ -1.61
COMMD3-215ENST00000602574 FAM229AH3BQW9 127 aa5□□□□□ -1.61
COMMD3-215ENST00000602574 ZNF292O60281 2723 aa5□□□□□ -1.61
COMMD3-215ENST00000602574 A0A1B0GU33 70 aa5□□□□□ -1.61
COMMD3-215ENST00000602574 TTC28Q96AY4 2481 aa5□□□□□ -1.61
COMMD3-215ENST00000602574 IGF2RP11717 2491 aa4.99□□□□□ -1.61
COMMD3-215ENST00000602574 CSMD1Q96PZ7 3565 aa4.99□□□□□ -1.61
COMMD3-215ENST00000602574 CHD6Q8TD26 2715 aa4.99□□□□□ -1.61
COMMD3-215ENST00000602574 IGKV2D-30A0A075B6S6 120 aa4.99□□□□□ -1.61
COMMD3-215ENST00000602574 H1FX-AS1Q4G0G2 97 aa4.99□□□□□ -1.61
COMMD3-215ENST00000602574 KRTAP7-1Q8IUC3 87 aa4.99□□□□□ -1.61
COMMD3-215ENST00000602574 NOTCH3Q9UM47 2321 aa4.99□□□□□ -1.61
COMMD3-215ENST00000602574 HTN3P15516 51 aa4.98□□□□□ -1.61
COMMD3-215ENST00000602574 DMXL1Q9Y485 3027 aa4.97□□□□□ -1.61
COMMD3-215ENST00000602574 LAMA5O15230 3695 aa4.97□□□□□ -1.61
COMMD3-215ENST00000602574 C2CD3Q4AC94 2353 aa4.95□□□□□ -1.62
COMMD3-215ENST00000602574 BOD1L1Q8NFC6 3051 aa4.95□□□□□ -1.62
COMMD3-215ENST00000602574 COX6B2Q6YFQ2 88 aa4.95□□□□□ -1.62
COMMD3-215ENST00000602574 DEFB4AO15263 64 aa4.94□□□□□ -1.62
COMMD3-215ENST00000602574 GVINP1Q7Z2Y8 2422 aa4.94□□□□□ -1.62
COMMD3-215ENST00000602574 KRTAP1-1Q07627 177 aa4.93□□□□□ -1.62
COMMD3-215ENST00000602574 TENM2Q9NT68 2774 aa4.93□□□□□ -1.62
COMMD3-215ENST00000602574 ATRXP46100 2492 aa4.92□□□□□ -1.62
COMMD3-215ENST00000602574 KRTAP24-1Q3LI83 254 aa4.92□□□□□ -1.62
COMMD3-215ENST00000602574 CEP295Q9C0D2 2601 aa4.91□□□□□ -1.62
COMMD3-215ENST00000602574 PRLHP81277 87 aa4.91□□□□□ -1.62
COMMD3-215ENST00000602574 LCE2CQ5TA81 110 aa4.9□□□□□ -1.62
COMMD3-215ENST00000602574 ATMQ13315 3056 aa4.9□□□□□ -1.62
COMMD3-215ENST00000602574 DOPEY1Q5JWR5 2465 aa4.9□□□□□ -1.62
COMMD3-215ENST00000602574 CELSR1Q9NYQ6 3014 aa4.9□□□□□ -1.62
COMMD3-215ENST00000602574 KRTAP10-9P60411 292 aa4.9□□□□□ -1.63
COMMD3-215ENST00000602574 RIF1Q5UIP0 2472 aaKnown RBP4.9□□□□□ -1.63
COMMD3-215ENST00000602574 OTOGQ6ZRI0 2925 aa4.89□□□□□ -1.63
COMMD3-215ENST00000602574 KRTAP10-3P60369 221 aa4.89□□□□□ -1.63
COMMD3-215ENST00000602574 NBASA2RRP1 2371 aa4.89□□□□□ -1.63
COMMD3-215ENST00000602574 LORP23490 312 aaPredicted RBP4.88□□□□□ -1.63
COMMD3-215ENST00000602574 C14orf177Q52M58 125 aa4.88□□□□□ -1.63
COMMD3-215ENST00000602574 SPTBN4Q9H254 2564 aa4.86□□□□□ -1.63
COMMD3-215ENST00000602574 ZFHX2Q9C0A1 2572 aaPredicted RBP4.86□□□□□ -1.63
COMMD3-215ENST00000602574 MAP1AP78559 2803 aaPredicted RBP4.86□□□□□ -1.63
COMMD3-215ENST00000602574 ASH1LQ9NR48 2969 aaKnown RBP4.85□□□□□ -1.63
COMMD3-215ENST00000602574 RPL37P61927 97 aaKnown RBP4.85□□□□□ -1.63
COMMD3-215ENST00000602574 ITPR1Q14643 2758 aa4.83□□□□□ -1.64
COMMD3-215ENST00000602574 TLN2Q9Y4G6 2542 aa4.83□□□□□ -1.64
COMMD3-215ENST00000602574 NCOR2Q9Y618 2525 aa4.82□□□□□ -1.64
COMMD3-215ENST00000602574 MUC6Q6W4X9 2439 aa4.82□□□□□ -1.64
COMMD3-215ENST00000602574 SPG11Q96JI7 2443 aa4.82□□□□□ -1.64
COMMD3-215ENST00000602574 TYMSOSQ8TAI1 123 aa4.81□□□□□ -1.64
COMMD3-215ENST00000602574 C10orf95Q9H7T3 257 aa4.8□□□□□ -1.64
COMMD3-215ENST00000602574 A0A096LNI7 61 aa4.79□□□□□ -1.64
COMMD3-215ENST00000602574 SETXQ7Z333 2677 aaKnown RBP4.79□□□□□ -1.64
COMMD3-215ENST00000602574 CELSR2Q9HCU4 2923 aa4.79□□□□□ -1.64
COMMD3-215ENST00000602574 KRTAP13-1Q8IUC0 172 aa4.79□□□□□ -1.64
COMMD3-215ENST00000602574 PRO2289Q9P1D8 64 aa4.79□□□□□ -1.64
COMMD3-215ENST00000602574 FLG2Q5D862 2391 aaPredicted RBP4.78□□□□□ -1.64
COMMD3-215ENST00000602574 COL12A1Q99715 3063 aa4.77□□□□□ -1.65
COMMD3-215ENST00000602574 SPINK1P00995 79 aa4.76□□□□□ -1.65
COMMD3-215ENST00000602574 MYO9AB2RTY4 2548 aa4.76□□□□□ -1.65
COMMD3-215ENST00000602574 PTPN13Q12923 2485 aa4.76□□□□□ -1.65
COMMD3-215ENST00000602574 AKAP9Q99996 3911 aa4.76□□□□□ -1.65
COMMD3-215ENST00000602574 RELNP78509 3460 aa4.75□□□□□ -1.65
COMMD3-215ENST00000602574 PLAC4Q8WY50 150 aa4.75□□□□□ -1.65
COMMD3-215ENST00000602574 WWC2-AS2Q96NR7 200 aa4.74□□□□□ -1.65
COMMD3-215ENST00000602574 FN1P02751 2386 aaKnown RBP4.74□□□□□ -1.65
COMMD3-215ENST00000602574 JMJD1CQ15652 2540 aa4.73□□□□□ -1.65
COMMD3-215ENST00000602574 MXRA5Q9NR99 2828 aa4.73□□□□□ -1.65
COMMD3-215ENST00000602574 VPS13CQ709C8 3753 aa4.73□□□□□ -1.65
COMMD3-215ENST00000602574 USP9XQ93008 2570 aaPredicted RBP4.72□□□□□ -1.65
COMMD3-215ENST00000602574 USP9YO00507 2555 aaPredicted RBP4.72□□□□□ -1.65
COMMD3-215ENST00000602574 XP32Q5T750 250 aa4.71□□□□□ -1.66
COMMD3-215ENST00000602574 NAV2Q8IVL1 2488 aa4.71□□□□□ -1.66
COMMD3-215ENST00000602574 CRYBG3Q68DQ2 2970 aa4.7□□□□□ -1.66
COMMD3-215ENST00000602574 HIVEP2P31629 2446 aa4.7□□□□□ -1.66
COMMD3-215ENST00000602574 SVEP1Q4LDE5 3571 aa4.7□□□□□ -1.66
COMMD3-215ENST00000602574 CHD8Q9HCK8 2581 aa4.68□□□□□ -1.66
COMMD3-215ENST00000602574 TEX15Q9BXT5 2789 aa4.68□□□□□ -1.66
COMMD3-215ENST00000602574 KRTAP10-11P60412 298 aa4.67□□□□□ -1.66
COMMD3-215ENST00000602574 LRRK2Q5S007 2527 aa4.66□□□□□ -1.66
COMMD3-215ENST00000602574 NBPF19A0A087WUL8 3843 aa4.65□□□□□ -1.66
COMMD3-215ENST00000602574 ANK3Q12955 4377 aaKnown RBP4.64□□□□□ -1.67
COMMD3-215ENST00000602574 APCP25054 2843 aa4.64□□□□□ -1.67
COMMD3-215ENST00000602574 SPINK6Q6UWN8 80 aa4.64□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 117.7 ms