RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 C21orf62-AS1Q17RA5 79 aa9.17□□□□□ -0.94
TRIM28-209ENST00000597423 SMIM29Q86T20 159 aa9.17□□□□□ -0.94
TRIM28-209ENST00000597423 Q8N1X5 172 aa9.17□□□□□ -0.94
TRIM28-209ENST00000597423 DSCR8Q96T75 97 aa9.17□□□□□ -0.94
TRIM28-209ENST00000597423 PDE6GP18545 87 aa9.16□□□□□ -0.94
TRIM28-209ENST00000597423 KRTAP10-4P60372 401 aaPredicted RBP9.16□□□□□ -0.94
TRIM28-209ENST00000597423 FAM229BQ4G0N7 80 aa9.16□□□□□ -0.94
TRIM28-209ENST00000597423 OBSCN-AS1Q96MR7 158 aa9.16□□□□□ -0.94
TRIM28-209ENST00000597423 C3orf22Q8N5N4 141 aa9.14□□□□□ -0.95
TRIM28-209ENST00000597423 Q6JHZ5 121 aa9.13□□□□□ -0.95
TRIM28-209ENST00000597423 CRYGAP11844 174 aa9.12□□□□□ -0.95
TRIM28-209ENST00000597423 VPS13BQ7Z7G8 4022 aa9.11□□□□□ -0.95
TRIM28-209ENST00000597423 IGLV8-61A0A075B6I0 122 aa9.11□□□□□ -0.95
TRIM28-209ENST00000597423 IGLV9-49A0A0B4J1Y8 123 aa9.11□□□□□ -0.95
TRIM28-209ENST00000597423 A0A1B0GV72 72 aa9.11□□□□□ -0.95
TRIM28-209ENST00000597423 J3QR89 54 aa9.11□□□□□ -0.95
TRIM28-209ENST00000597423 C9orf153Q5TBE3 101 aa9.11□□□□□ -0.95
TRIM28-209ENST00000597423 ANAPC11Q9NYG5 84 aa9.11□□□□□ -0.95
TRIM28-209ENST00000597423 EPPK1P58107 5090 aaKnown RBP9.1□□□□□ -0.95
TRIM28-209ENST00000597423 LOC110117498A0A087WWA1 95 aa9.1□□□□□ -0.95
TRIM28-209ENST00000597423 C14orf132Q9NPU4 83 aa9.1□□□□□ -0.95
TRIM28-209ENST00000597423 SSBP3-AS1Q7Z2R9 100 aa9.09□□□□□ -0.95
TRIM28-209ENST00000597423 Q8NBF4 154 aa9.09□□□□□ -0.95
TRIM28-209ENST00000597423 SRRM2Q9UQ35 2752 aaKnown RBP9.09□□□□□ -0.95
TRIM28-209ENST00000597423 RYR1P21817 5038 aa9.08□□□□□ -0.96
TRIM28-209ENST00000597423 TRBV7-4A0A0J9YYF1 115 aa9.07□□□□□ -0.96
TRIM28-209ENST00000597423 KRTAP1-4P0C5Y4 121 aa9.07□□□□□ -0.96
TRIM28-209ENST00000597423 CCKP06307 115 aa9.06□□□□□ -0.96
TRIM28-209ENST00000597423 MOBPQ13875 183 aa9.06□□□□□ -0.96
TRIM28-209ENST00000597423 Q6ZQT0 140 aa9.05□□□□□ -0.96
TRIM28-209ENST00000597423 HSPG2P98160 4391 aa9.04□□□□□ -0.96
TRIM28-209ENST00000597423 A0A1B0GW54 56 aa9.03□□□□□ -0.96
TRIM28-209ENST00000597423 IGFL1Q6UW32 110 aa9.03□□□□□ -0.96
TRIM28-209ENST00000597423 K7ERU9 68 aa9.02□□□□□ -0.97
TRIM28-209ENST00000597423 TYMSOSQ8TAI1 123 aa9.02□□□□□ -0.97
TRIM28-209ENST00000597423 VPS25Q9BRG1 176 aa9.02□□□□□ -0.97
TRIM28-209ENST00000597423 FAT1Q14517 4588 aa9.01□□□□□ -0.97
TRIM28-209ENST00000597423 A0A087X002 238 aa9.01□□□□□ -0.97
TRIM28-209ENST00000597423 ACYP1P07311 99 aa9.01□□□□□ -0.97
TRIM28-209ENST00000597423 C4orf48Q5BLP8 95 aa9□□□□□ -0.97
TRIM28-209ENST00000597423 KIAA1109Q2LD37 5005 aa9□□□□□ -0.97
TRIM28-209ENST00000597423 KRTAP13-2Q52LG2 175 aa8.99□□□□□ -0.97
TRIM28-209ENST00000597423 CD164Q04900 197 aa8.98□□□□□ -0.97
TRIM28-209ENST00000597423 Q6Q795 121 aa8.98□□□□□ -0.97
TRIM28-209ENST00000597423 PRR26Q8N8Z3 221 aa8.98□□□□□ -0.97
TRIM28-209ENST00000597423 FAM240AA0A1B0GVK7 77 aa8.97□□□□□ -0.97
TRIM28-209ENST00000597423 A0A1W2PNM2 257 aa8.97□□□□□ -0.97
TRIM28-209ENST00000597423 KRTAP17-1Q9BYP8 105 aa8.96□□□□□ -0.98
TRIM28-209ENST00000597423 SPAG11AQ6PDA7 123 aa8.95□□□□□ -0.98
TRIM28-209ENST00000597423 BIRC6Q9NR09 4857 aa8.94□□□□□ -0.98
TRIM28-209ENST00000597423 A0A0G2JQZ4 141 aa8.94□□□□□ -0.98
TRIM28-209ENST00000597423 TRBV7-7A0A0K0K1E9 115 aa8.92□□□□□ -0.98
TRIM28-209ENST00000597423 OXTP01178 125 aa8.92□□□□□ -0.98
TRIM28-209ENST00000597423 HRCT1Q6UXD1 115 aa8.92□□□□□ -0.98
TRIM28-209ENST00000597423 UBL5Q9BZL1 73 aa8.91□□□□□ -0.98
TRIM28-209ENST00000597423 SS18L2Q9UHA2 77 aa8.91□□□□□ -0.98
TRIM28-209ENST00000597423 SPINK1P00995 79 aa8.9□□□□□ -0.98
TRIM28-209ENST00000597423 LINC00304Q8N9R0 145 aa8.9□□□□□ -0.98
TRIM28-209ENST00000597423 PKHD1L1Q86WI1 4243 aa8.89□□□□□ -0.99
TRIM28-209ENST00000597423 A0A087WSZ3 146 aa8.89□□□□□ -0.99
TRIM28-209ENST00000597423 NREPQ16612 68 aa8.89□□□□□ -0.99
TRIM28-209ENST00000597423 KRTAP10-8P60410 259 aa8.88□□□□□ -0.99
TRIM28-209ENST00000597423 LINC00846Q9NV44 126 aa8.88□□□□□ -0.99
TRIM28-209ENST00000597423 LIMD2Q9BT23 127 aa8.87□□□□□ -0.99
TRIM28-209ENST00000597423 RPS29P62273 56 aaKnown RBP8.85□□□□□ -0.99
TRIM28-209ENST00000597423 KRTAP4-5Q9BYR2 181 aa8.85□□□□□ -0.99
TRIM28-209ENST00000597423 Q5XG85 94 aa8.83□□□□□ -1
TRIM28-209ENST00000597423 Q6ZVQ6 151 aa8.82□□□□□ -1
TRIM28-209ENST00000597423 KRTAP29-1A8MX34 341 aaPredicted RBP8.81□□□□□ -1
TRIM28-209ENST00000597423 ASB16-AS1Q495Z4 193 aa8.81□□□□□ -1
TRIM28-209ENST00000597423 LINC00643Q86TS7 51 aa8.81□□□□□ -1
TRIM28-209ENST00000597423 J3KT08 172 aa8.78□□□□□ -1
TRIM28-209ENST00000597423 HERC2O95714 4834 aa8.77□□□□□ -1.01
TRIM28-209ENST00000597423 BPY2O14599 106 aa8.77□□□□□ -1.01
TRIM28-209ENST00000597423 ATP5EP2Q5VTU8 51 aa8.77□□□□□ -1.01
TRIM28-209ENST00000597423 CDIP1Q9H305 208 aa8.77□□□□□ -1.01
TRIM28-209ENST00000597423 SIGMAR1Q99720 223 aa8.75□□□□□ -1.01
TRIM28-209ENST00000597423 LINC00472Q9H8W2 130 aa8.75□□□□□ -1.01
TRIM28-209ENST00000597423 J3QL48 77 aa8.74□□□□□ -1.01
TRIM28-209ENST00000597423 MT1HL1P0DM35 61 aa8.74□□□□□ -1.01
TRIM28-209ENST00000597423 CXCL6P80162 114 aa8.74□□□□□ -1.01
TRIM28-209ENST00000597423 FLG2Q5D862 2391 aaPredicted RBP8.74□□□□□ -1.01
TRIM28-209ENST00000597423 IGKV4-1P06312 121 aa8.72□□□□□ -1.01
TRIM28-209ENST00000597423 NDUFB1O75438 58 aa8.71□□□□□ -1.02
TRIM28-209ENST00000597423 DEFB116Q30KQ4 102 aa8.7□□□□□ -1.02
TRIM28-209ENST00000597423 C1orf195Q5TG92 126 aa8.7□□□□□ -1.02
TRIM28-209ENST00000597423 IGKV3D-7A0A0C4DH55 119 aa8.69□□□□□ -1.02
TRIM28-209ENST00000597423 Q96NJ1 140 aa8.68□□□□□ -1.02
TRIM28-209ENST00000597423 FAT3Q8TDW7 4589 aa8.67□□□□□ -1.02
TRIM28-209ENST00000597423 A8MWP4 228 aa8.66□□□□□ -1.02
TRIM28-209ENST00000597423 LRP1Q07954 4544 aaKnown RBP8.65□□□□□ -1.02
TRIM28-209ENST00000597423 IMUPQ9GZP8 106 aa8.64□□□□□ -1.03
TRIM28-209ENST00000597423 DSCR10P59022 87 aa8.63□□□□□ -1.03
TRIM28-209ENST00000597423 HIST1H4AP62805 103 aaKnown RBP8.63□□□□□ -1.03
TRIM28-209ENST00000597423 MT-ATP8P03928 68 aa8.62□□□□□ -1.03
TRIM28-209ENST00000597423 TNXBP22105 4242 aa8.62□□□□□ -1.03
TRIM28-209ENST00000597423 FP248Q71RG6 208 aaPredicted RBP8.61□□□□□ -1.03
TRIM28-209ENST00000597423 PRR15Q8IV56 129 aa8.61□□□□□ -1.03
TRIM28-209ENST00000597423 ABCA13Q86UQ4 5058 aa8.6□□□□□ -1.03
TRIM28-209ENST00000597423 MYCBP2O75592 4640 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms