RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 F8WEM9 126 aa11□□□□□ -0.65
SHMT1-209ENST00000582653 MT1HP80294 61 aa10.99□□□□□ -0.65
SHMT1-209ENST00000582653 SCGB1D1O95968 90 aa10.98□□□□□ -0.65
SHMT1-209ENST00000582653 TCL1BO95988 128 aa10.98□□□□□ -0.65
SHMT1-209ENST00000582653 HIST1H4GQ99525 98 aa10.97□□□□□ -0.65
SHMT1-209ENST00000582653 S100A1P23297 94 aa10.96□□□□□ -0.65
SHMT1-209ENST00000582653 IGFL1Q6UW32 110 aa10.94□□□□□ -0.66
SHMT1-209ENST00000582653 CFC1BP0CG36 223 aa10.93□□□□□ -0.66
SHMT1-209ENST00000582653 RPL37P61927 97 aaKnown RBP10.93□□□□□ -0.66
SHMT1-209ENST00000582653 COX8AP10176 69 aa10.92□□□□□ -0.66
SHMT1-209ENST00000582653 OCIAD2Q56VL3 154 aa10.92□□□□□ -0.66
SHMT1-209ENST00000582653 Q6JHZ5 121 aa10.92□□□□□ -0.66
SHMT1-209ENST00000582653 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP10.91□□□□□ -0.66
SHMT1-209ENST00000582653 CLEC2BQ92478 149 aa10.91□□□□□ -0.66
SHMT1-209ENST00000582653 CRCT1Q9UGL9 99 aa10.91□□□□□ -0.66
SHMT1-209ENST00000582653 TRBV7-7A0A0K0K1E9 115 aa10.9□□□□□ -0.66
SHMT1-209ENST00000582653 BVES-AS1Q5T3Y7 98 aa10.9□□□□□ -0.66
SHMT1-209ENST00000582653 FSIP2Q5CZC0 6907 aa10.89□□□□□ -0.67
SHMT1-209ENST00000582653 C14orf144Q96I85 54 aa10.87□□□□□ -0.67
SHMT1-209ENST00000582653 SNHG12Q9BXW3 62 aa10.87□□□□□ -0.67
SHMT1-209ENST00000582653 DLEU1O43261 78 aa10.86□□□□□ -0.67
SHMT1-209ENST00000582653 CFC1P0CG37 223 aa10.86□□□□□ -0.67
SHMT1-209ENST00000582653 H3BUT2 72 aa10.85□□□□□ -0.67
SHMT1-209ENST00000582653 LORP23490 312 aaPredicted RBP10.84□□□□□ -0.67
SHMT1-209ENST00000582653 PPDPFLQ8WWR9 84 aa10.84□□□□□ -0.67
SHMT1-209ENST00000582653 RAB37Q96AX2 223 aa10.82□□□□□ -0.68
SHMT1-209ENST00000582653 PAM16Q9Y3D7 125 aa10.82□□□□□ -0.68
SHMT1-209ENST00000582653 KRTAP10-6P60371 365 aaPredicted RBP10.81□□□□□ -0.68
SHMT1-209ENST00000582653 SPATA45Q537H7 98 aa10.8□□□□□ -0.68
SHMT1-209ENST00000582653 OBSCN-AS1Q96MR7 158 aa10.79□□□□□ -0.68
SHMT1-209ENST00000582653 FAM218AQ96MZ4 157 aa10.79□□□□□ -0.68
SHMT1-209ENST00000582653 C2orf91Q6ZV80 131 aa10.78□□□□□ -0.68
SHMT1-209ENST00000582653 HIGD1BQ9P298 99 aa10.78□□□□□ -0.68
SHMT1-209ENST00000582653 M0R2T5 61 aa10.77□□□□□ -0.69
SHMT1-209ENST00000582653 A0A0B4J2C4 111 aa10.76□□□□□ -0.69
SHMT1-209ENST00000582653 COX6B2Q6YFQ2 88 aa10.76□□□□□ -0.69
SHMT1-209ENST00000582653 H0YGX0 51 aa10.75□□□□□ -0.69
SHMT1-209ENST00000582653 LST1O00453 97 aa10.75□□□□□ -0.69
SHMT1-209ENST00000582653 FLGP20930 4061 aaPredicted RBP10.74□□□□□ -0.69
SHMT1-209ENST00000582653 NDUFV3P56181 108 aaKnown RBP10.74□□□□□ -0.69
SHMT1-209ENST00000582653 VAMP8Q9BV40 100 aa10.74□□□□□ -0.69
SHMT1-209ENST00000582653 SNCGO76070 127 aa10.73□□□□□ -0.69
SHMT1-209ENST00000582653 Q75L30 129 aa10.71□□□□□ -0.69
SHMT1-209ENST00000582653 CEND1Q8N111 149 aa10.71□□□□□ -0.69
SHMT1-209ENST00000582653 Q6Q795 121 aa10.7□□□□□ -0.7
SHMT1-209ENST00000582653 ATP11AUNQ6ZP68 121 aa10.7□□□□□ -0.7
SHMT1-209ENST00000582653 Q96NJ1 140 aa10.69□□□□□ -0.7
SHMT1-209ENST00000582653 PRO1854Q9UHT4 67 aa10.69□□□□□ -0.7
SHMT1-209ENST00000582653 TEN1Q86WV5 123 aa10.68□□□□□ -0.7
SHMT1-209ENST00000582653 SS18L2Q9UHA2 77 aa10.67□□□□□ -0.7
SHMT1-209ENST00000582653 H3BMG7 143 aa10.66□□□□□ -0.7
SHMT1-209ENST00000582653 FABP2P12104 132 aa10.66□□□□□ -0.7
SHMT1-209ENST00000582653 FXYD2P54710 66 aa10.66□□□□□ -0.7
SHMT1-209ENST00000582653 A0A087WSZ3 146 aa10.65□□□□□ -0.7
SHMT1-209ENST00000582653 TMEM238LA0A1B0GVL6 79 aa10.63□□□□□ -0.71
SHMT1-209ENST00000582653 A0A1B0GX51 115 aa10.63□□□□□ -0.71
SHMT1-209ENST00000582653 A6NJY4 79 aa10.63□□□□□ -0.71
SHMT1-209ENST00000582653 TRIAP1O43715 76 aa10.62□□□□□ -0.71
SHMT1-209ENST00000582653 A0A1W2PNM2 257 aa10.59□□□□□ -0.71
SHMT1-209ENST00000582653 GHRHP01286 108 aa10.58□□□□□ -0.72
SHMT1-209ENST00000582653 C20orf166-AS1Q96NR2 134 aa10.58□□□□□ -0.72
SHMT1-209ENST00000582653 A8MUU9 505 aa10.56□□□□□ -0.72
SHMT1-209ENST00000582653 A0A1B0GV72 72 aa10.55□□□□□ -0.72
SHMT1-209ENST00000582653 K7ERJ3 54 aa10.55□□□□□ -0.72
SHMT1-209ENST00000582653 DSCR10P59022 87 aa10.55□□□□□ -0.72
SHMT1-209ENST00000582653 PYY3Q5JQD4 70 aa10.54□□□□□ -0.72
SHMT1-209ENST00000582653 PSMB2P49721 201 aa10.53□□□□□ -0.72
SHMT1-209ENST00000582653 ANKRD29Q8N6D5 301 aa10.52□□□□□ -0.73
SHMT1-209ENST00000582653 DNAL4O96015 105 aa10.51□□□□□ -0.73
SHMT1-209ENST00000582653 HSD52Q0P140 79 aa10.51□□□□□ -0.73
SHMT1-209ENST00000582653 SIGMAR1Q99720 223 aa10.51□□□□□ -0.73
SHMT1-209ENST00000582653 ORMDL1Q9P0S3 153 aa10.51□□□□□ -0.73
SHMT1-209ENST00000582653 TRBV7-4A0A0J9YYF1 115 aa10.47□□□□□ -0.73
SHMT1-209ENST00000582653 IGKV4-1P06312 121 aa10.47□□□□□ -0.73
SHMT1-209ENST00000582653 DEFB116Q30KQ4 102 aa10.46□□□□□ -0.73
SHMT1-209ENST00000582653 TMEM256-PLSCR3K7ERE1 68 aa10.45□□□□□ -0.74
SHMT1-209ENST00000582653 COX6CP09669 75 aa10.45□□□□□ -0.74
SHMT1-209ENST00000582653 LINC00313P59037 77 aa10.45□□□□□ -0.74
SHMT1-209ENST00000582653 TRBV20-1A0A075B6N2 111 aa10.43□□□□□ -0.74
SHMT1-209ENST00000582653 KRTAP16-1A8MUX0 517 aa10.43□□□□□ -0.74
SHMT1-209ENST00000582653 H3BQ85 93 aa10.43□□□□□ -0.74
SHMT1-209ENST00000582653 NOTCH2NLQ7Z3S9 236 aa10.43□□□□□ -0.74
SHMT1-209ENST00000582653 CCKP06307 115 aa10.41□□□□□ -0.74
SHMT1-209ENST00000582653 KRTAP9-8Q9BYQ0 159 aa10.4□□□□□ -0.74
SHMT1-209ENST00000582653 LINC00472Q9H8W2 130 aa10.4□□□□□ -0.74
SHMT1-209ENST00000582653 TRACP01848 142 aa10.39□□□□□ -0.75
SHMT1-209ENST00000582653 UQCR10Q9UDW1 63 aa10.39□□□□□ -0.75
SHMT1-209ENST00000582653 UBE2V1Q13404 147 aa10.38□□□□□ -0.75
SHMT1-209ENST00000582653 TMA7Q9Y2S6 64 aaKnown RBP10.37□□□□□ -0.75
SHMT1-209ENST00000582653 IGHV6-1A0A0B4J1U7 121 aa10.35□□□□□ -0.75
SHMT1-209ENST00000582653 SCGB1C2P0DMR2 95 aa10.35□□□□□ -0.75
SHMT1-209ENST00000582653 VPS25Q9BRG1 176 aa10.35□□□□□ -0.75
SHMT1-209ENST00000582653 RBM3P98179 157 aaKnown RBP10.3□□□□□ -0.76
SHMT1-209ENST00000582653 DSCR8Q96T75 97 aa10.28□□□□□ -0.76
SHMT1-209ENST00000582653 FAM236DA0A1B0GTK5 79 aa10.27□□□□□ -0.77
SHMT1-209ENST00000582653 FAM236CP0DP71 79 aa10.27□□□□□ -0.77
SHMT1-209ENST00000582653 BAALC-AS2P0C853 105 aa10.26□□□□□ -0.77
SHMT1-209ENST00000582653 HRES1P13985 223 aa10.26□□□□□ -0.77
SHMT1-209ENST00000582653 A0A1B0GVX0 72 aa10.25□□□□□ -0.77
SHMT1-209ENST00000582653 MPLKIPQ8TAP9 179 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms