RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 hADV29S1A0JD25 119 aa9.95□□□□□ -0.82
CLN3-218ENST00000565688 Q6ZQY7 126 aa9.95□□□□□ -0.82
CLN3-218ENST00000565688 HSBP1L1C9JCN9 74 aa9.94□□□□□ -0.82
CLN3-218ENST00000565688 COX6B2Q6YFQ2 88 aa9.93□□□□□ -0.82
CLN3-218ENST00000565688 CLEC2BQ92478 149 aa9.93□□□□□ -0.82
CLN3-218ENST00000565688 LORP23490 312 aaPredicted RBP9.92□□□□□ -0.82
CLN3-218ENST00000565688 KRTAP10-6P60371 365 aaPredicted RBP9.92□□□□□ -0.82
CLN3-218ENST00000565688 TRBV7-7A0A0K0K1E9 115 aa9.91□□□□□ -0.82
CLN3-218ENST00000565688 M0R2T5 61 aa9.91□□□□□ -0.82
CLN3-218ENST00000565688 OCIAD2Q56VL3 154 aa9.9□□□□□ -0.82
CLN3-218ENST00000565688 S100A2P29034 98 aa9.89□□□□□ -0.83
CLN3-218ENST00000565688 IGFL1Q6UW32 110 aa9.89□□□□□ -0.83
CLN3-218ENST00000565688 PPDPFLQ8WWR9 84 aa9.89□□□□□ -0.83
CLN3-218ENST00000565688 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.88□□□□□ -0.83
CLN3-218ENST00000565688 HIST3H2BBQ8N257 126 aa9.88□□□□□ -0.83
CLN3-218ENST00000565688 HIST1H2BLQ99880 126 aa9.88□□□□□ -0.83
CLN3-218ENST00000565688 BVES-AS1Q5T3Y7 98 aa9.87□□□□□ -0.83
CLN3-218ENST00000565688 SCGB1D1O95968 90 aa9.84□□□□□ -0.83
CLN3-218ENST00000565688 SNHG12Q9BXW3 62 aa9.84□□□□□ -0.83
CLN3-218ENST00000565688 ATP11AUNQ6ZP68 121 aa9.83□□□□□ -0.84
CLN3-218ENST00000565688 OBSCN-AS1Q96MR7 158 aa9.83□□□□□ -0.84
CLN3-218ENST00000565688 Q75L30 129 aa9.82□□□□□ -0.84
CLN3-218ENST00000565688 HIST1H4GQ99525 98 aa9.82□□□□□ -0.84
CLN3-218ENST00000565688 C12orf57Q99622 126 aa9.81□□□□□ -0.84
CLN3-218ENST00000565688 LST1O00453 97 aa9.8□□□□□ -0.84
CLN3-218ENST00000565688 FLGP20930 4061 aaPredicted RBP9.79□□□□□ -0.84
CLN3-218ENST00000565688 H3BUT2 72 aa9.77□□□□□ -0.85
CLN3-218ENST00000565688 SNCGO76070 127 aa9.77□□□□□ -0.85
CLN3-218ENST00000565688 S100A6P06703 90 aa9.77□□□□□ -0.85
CLN3-218ENST00000565688 SS18L2Q9UHA2 77 aa9.77□□□□□ -0.85
CLN3-218ENST00000565688 COX8AP10176 69 aa9.75□□□□□ -0.85
CLN3-218ENST00000565688 Q6Q795 121 aa9.74□□□□□ -0.85
CLN3-218ENST00000565688 Q96NJ1 140 aa9.73□□□□□ -0.85
CLN3-218ENST00000565688 DLEU1O43261 78 aa9.72□□□□□ -0.85
CLN3-218ENST00000565688 H0YGX0 51 aa9.71□□□□□ -0.86
CLN3-218ENST00000565688 TEN1Q86WV5 123 aa9.71□□□□□ -0.86
CLN3-218ENST00000565688 RAB37Q96AX2 223 aa9.71□□□□□ -0.86
CLN3-218ENST00000565688 CFC1P0CG37 223 aa9.7□□□□□ -0.86
CLN3-218ENST00000565688 NDUFV3P56181 108 aaKnown RBP9.69□□□□□ -0.86
CLN3-218ENST00000565688 C20orf166-AS1Q96NR2 134 aa9.68□□□□□ -0.86
CLN3-218ENST00000565688 GHRHP01286 108 aa9.67□□□□□ -0.86
CLN3-218ENST00000565688 A0A0B4J2C4 111 aa9.66□□□□□ -0.86
CLN3-218ENST00000565688 HIGD1BQ9P298 99 aa9.66□□□□□ -0.86
CLN3-218ENST00000565688 A0A087WSZ3 146 aa9.64□□□□□ -0.87
CLN3-218ENST00000565688 A8MUU9 505 aa9.64□□□□□ -0.87
CLN3-218ENST00000565688 S100A1P23297 94 aa9.64□□□□□ -0.87
CLN3-218ENST00000565688 FAM218AQ96MZ4 157 aa9.64□□□□□ -0.87
CLN3-218ENST00000565688 C14orf144Q96I85 54 aa9.63□□□□□ -0.87
CLN3-218ENST00000565688 A0A1B0GX51 115 aa9.62□□□□□ -0.87
CLN3-218ENST00000565688 H3BMG7 143 aa9.62□□□□□ -0.87
CLN3-218ENST00000565688 TRBV20-1A0A075B6N2 111 aa9.61□□□□□ -0.87
CLN3-218ENST00000565688 FABP2P12104 132 aa9.59□□□□□ -0.87
CLN3-218ENST00000565688 SPATA45Q537H7 98 aa9.58□□□□□ -0.88
CLN3-218ENST00000565688 PRO1854Q9UHT4 67 aa9.58□□□□□ -0.88
CLN3-218ENST00000565688 PAM16Q9Y3D7 125 aa9.58□□□□□ -0.88
CLN3-218ENST00000565688 TMEM238LA0A1B0GVL6 79 aa9.57□□□□□ -0.88
CLN3-218ENST00000565688 A6NJY4 79 aa9.57□□□□□ -0.88
CLN3-218ENST00000565688 C2orf91Q6ZV80 131 aa9.56□□□□□ -0.88
CLN3-218ENST00000565688 CEND1Q8N111 149 aa9.56□□□□□ -0.88
CLN3-218ENST00000565688 DSCR10P59022 87 aa9.55□□□□□ -0.88
CLN3-218ENST00000565688 SIGMAR1Q99720 223 aa9.55□□□□□ -0.88
CLN3-218ENST00000565688 VAMP8Q9BV40 100 aa9.55□□□□□ -0.88
CLN3-218ENST00000565688 A0A1W2PNM2 257 aa9.53□□□□□ -0.88
CLN3-218ENST00000565688 LINC00313P59037 77 aa9.51□□□□□ -0.89
CLN3-218ENST00000565688 TRBV7-4A0A0J9YYF1 115 aa9.5□□□□□ -0.89
CLN3-218ENST00000565688 H3BQ85 93 aa9.5□□□□□ -0.89
CLN3-218ENST00000565688 TRIAP1O43715 76 aa9.5□□□□□ -0.89
CLN3-218ENST00000565688 ANKRD29Q8N6D5 301 aa9.5□□□□□ -0.89
CLN3-218ENST00000565688 KRTAP9-8Q9BYQ0 159 aa9.5□□□□□ -0.89
CLN3-218ENST00000565688 DNAL4O96015 105 aa9.49□□□□□ -0.89
CLN3-218ENST00000565688 IGKV4-1P06312 121 aa9.48□□□□□ -0.89
CLN3-218ENST00000565688 FXYD2P54710 66 aa9.48□□□□□ -0.89
CLN3-218ENST00000565688 ORMDL1Q9P0S3 153 aa9.48□□□□□ -0.89
CLN3-218ENST00000565688 KRTAP16-1A8MUX0 517 aa9.44□□□□□ -0.9
CLN3-218ENST00000565688 TMEM256-PLSCR3K7ERE1 68 aa9.44□□□□□ -0.9
CLN3-218ENST00000565688 FAM236DA0A1B0GTK5 79 aa9.43□□□□□ -0.9
CLN3-218ENST00000565688 FAM236CP0DP71 79 aa9.43□□□□□ -0.9
CLN3-218ENST00000565688 PSMB2P49721 201 aa9.42□□□□□ -0.9
CLN3-218ENST00000565688 A0A1B0GV72 72 aa9.41□□□□□ -0.9
CLN3-218ENST00000565688 COX6CP09669 75 aa9.41□□□□□ -0.9
CLN3-218ENST00000565688 LINC00472Q9H8W2 130 aa9.41□□□□□ -0.9
CLN3-218ENST00000565688 RBM12B-AS1Q9P1G2 102 aa9.41□□□□□ -0.9
CLN3-218ENST00000565688 TRACP01848 142 aa9.4□□□□□ -0.9
CLN3-218ENST00000565688 CCKP06307 115 aa9.4□□□□□ -0.9
CLN3-218ENST00000565688 HSD52Q0P140 79 aa9.38□□□□□ -0.91
CLN3-218ENST00000565688 DEFB116Q30KQ4 102 aa9.38□□□□□ -0.91
CLN3-218ENST00000565688 NOTCH2NLQ7Z3S9 236 aa9.38□□□□□ -0.91
CLN3-218ENST00000565688 USH2AO75445 5202 aa9.38□□□□□ -0.91
CLN3-218ENST00000565688 IGHV6-1A0A0B4J1U7 121 aa9.37□□□□□ -0.91
CLN3-218ENST00000565688 MPLKIPQ8TAP9 179 aa9.37□□□□□ -0.91
CLN3-218ENST00000565688 UBE2V1Q13404 147 aa9.36□□□□□ -0.91
CLN3-218ENST00000565688 K7ERJ3 54 aa9.35□□□□□ -0.91
CLN3-218ENST00000565688 HRES1P13985 223 aa9.35□□□□□ -0.91
CLN3-218ENST00000565688 MT2AP02795 61 aa9.34□□□□□ -0.91
CLN3-218ENST00000565688 SSPOA2VEC9 5147 aa9.33□□□□□ -0.92
CLN3-218ENST00000565688 C8orf87E5RJ46 101 aa9.32□□□□□ -0.92
CLN3-218ENST00000565688 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.31□□□□□ -0.92
CLN3-218ENST00000565688 A0A1B0GVX0 72 aa9.29□□□□□ -0.92
CLN3-218ENST00000565688 VPS25Q9BRG1 176 aa9.29□□□□□ -0.92
CLN3-218ENST00000565688 RBM3P98179 157 aaKnown RBP9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms