RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 H7C2G1 150 aa5.23□□□□□ -1.57
VPS35-206ENST00000565228 HINT1P49773 126 aaPredicted RBP5.23□□□□□ -1.57
VPS35-206ENST00000565228 TAL2Q16559 108 aa5.23□□□□□ -1.57
VPS35-206ENST00000565228 PRR4Q16378 134 aa5.22□□□□□ -1.57
VPS35-206ENST00000565228 Q1RN00 199 aa5.22□□□□□ -1.57
VPS35-206ENST00000565228 CBY1Q9Y3M2 126 aa5.22□□□□□ -1.57
VPS35-206ENST00000565228 SSBP3-AS1Q7Z2R9 100 aa5.21□□□□□ -1.58
VPS35-206ENST00000565228 UQCR10Q9UDW1 63 aa5.21□□□□□ -1.58
VPS35-206ENST00000565228 TEX49A0A1B0GTD5 131 aa5.2□□□□□ -1.58
VPS35-206ENST00000565228 HSD52Q0P140 79 aa5.2□□□□□ -1.58
VPS35-206ENST00000565228 BVES-AS1Q5T3Y7 98 aa5.2□□□□□ -1.58
VPS35-206ENST00000565228 C9orf153Q5TBE3 101 aa5.2□□□□□ -1.58
VPS35-206ENST00000565228 Q6ZQY7 126 aa5.19□□□□□ -1.58
VPS35-206ENST00000565228 RAB37Q96AX2 223 aa5.19□□□□□ -1.58
VPS35-206ENST00000565228 NHP2Q9NX24 153 aaKnown RBP5.19□□□□□ -1.58
VPS35-206ENST00000565228 PRO1854Q9UHT4 67 aa5.19□□□□□ -1.58
VPS35-206ENST00000565228 hADV29S1A0JD25 119 aa5.18□□□□□ -1.58
VPS35-206ENST00000565228 TRIAP1O43715 76 aa5.18□□□□□ -1.58
VPS35-206ENST00000565228 HRCT1Q6UXD1 115 aa5.18□□□□□ -1.58
VPS35-206ENST00000565228 SMIM6P0DI80 62 aa5.17□□□□□ -1.58
VPS35-206ENST00000565228 SPAG11AQ6PDA7 123 aa5.17□□□□□ -1.58
VPS35-206ENST00000565228 KRTAP4-8A0A0G2JLE6 195 aa5.16□□□□□ -1.58
VPS35-206ENST00000565228 SPINK1P00995 79 aa5.16□□□□□ -1.58
VPS35-206ENST00000565228 CTAG1AP78358 180 aa5.16□□□□□ -1.58
VPS35-206ENST00000565228 CLEC2BQ92478 149 aa5.16□□□□□ -1.58
VPS35-206ENST00000565228 LAMTOR3Q9UHA4 124 aa5.16□□□□□ -1.58
VPS35-206ENST00000565228 FSIP2Q5CZC0 6907 aa5.14□□□□□ -1.59
VPS35-206ENST00000565228 IGLV7-46A0A075B6I9 117 aa5.14□□□□□ -1.59
VPS35-206ENST00000565228 RPS29P62273 56 aaKnown RBP5.14□□□□□ -1.59
VPS35-206ENST00000565228 VAMP3Q15836 100 aa5.14□□□□□ -1.59
VPS35-206ENST00000565228 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP5.14□□□□□ -1.59
VPS35-206ENST00000565228 IGLV8-61A0A075B6I0 122 aa5.13□□□□□ -1.59
VPS35-206ENST00000565228 TMEM238LA0A1B0GVL6 79 aa5.13□□□□□ -1.59
VPS35-206ENST00000565228 KRTAP13-3Q3SY46 172 aa5.13□□□□□ -1.59
VPS35-206ENST00000565228 IGFL1Q6UW32 110 aa5.13□□□□□ -1.59
VPS35-206ENST00000565228 H3BUT2 72 aa5.12□□□□□ -1.59
VPS35-206ENST00000565228 SLC25A20O43772 301 aa5.12□□□□□ -1.59
VPS35-206ENST00000565228 NAA38Q9BRA0 125 aaKnown RBP5.12□□□□□ -1.59
VPS35-206ENST00000565228 H0YGX0 51 aa5.11□□□□□ -1.59
VPS35-206ENST00000565228 TPRXLQ17RH7 258 aa5.11□□□□□ -1.59
VPS35-206ENST00000565228 OCIAD2Q56VL3 154 aa5.1□□□□□ -1.59
VPS35-206ENST00000565228 CD164Q04900 197 aa5.09□□□□□ -1.59
VPS35-206ENST00000565228 FP248Q71RG6 208 aaPredicted RBP5.09□□□□□ -1.59
VPS35-206ENST00000565228 KRTAP4-1Q9BYQ7 146 aa5.09□□□□□ -1.59
VPS35-206ENST00000565228 C1orf195Q5TG92 126 aa5.08□□□□□ -1.6
VPS35-206ENST00000565228 Q5XG85 94 aa5.08□□□□□ -1.6
VPS35-206ENST00000565228 A0A1B0GX51 115 aa5.07□□□□□ -1.6
VPS35-206ENST00000565228 PSMB2P49721 201 aa5.07□□□□□ -1.6
VPS35-206ENST00000565228 NDUFV3P56181 108 aaKnown RBP5.07□□□□□ -1.6
VPS35-206ENST00000565228 LST1O00453 97 aa5.06□□□□□ -1.6
VPS35-206ENST00000565228 PPDPFLQ8WWR9 84 aa5.06□□□□□ -1.6
VPS35-206ENST00000565228 TRBV7-7A0A0K0K1E9 115 aa5.05□□□□□ -1.6
VPS35-206ENST00000565228 A0A1W2PNM2 257 aa5.05□□□□□ -1.6
VPS35-206ENST00000565228 TCL1BO95988 128 aa5.05□□□□□ -1.6
VPS35-206ENST00000565228 SNHG12Q9BXW3 62 aa5.05□□□□□ -1.6
VPS35-206ENST00000565228 A0A1B0GV72 72 aa5.04□□□□□ -1.6
VPS35-206ENST00000565228 FABP2P12104 132 aa5.04□□□□□ -1.6
VPS35-206ENST00000565228 Q6JHZ5 121 aa5.04□□□□□ -1.6
VPS35-206ENST00000565228 F8WEM9 126 aa5.03□□□□□ -1.6
VPS35-206ENST00000565228 TSTD3H0UI37 97 aa5.03□□□□□ -1.6
VPS35-206ENST00000565228 M0R143 59 aa5.03□□□□□ -1.6
VPS35-206ENST00000565228 LCE1DQ5T752 114 aa5.03□□□□□ -1.6
VPS35-206ENST00000565228 LIMD2Q9BT23 127 aa5.03□□□□□ -1.6
VPS35-206ENST00000565228 CDIP1Q9H305 208 aa5.03□□□□□ -1.6
VPS35-206ENST00000565228 C9orf92A6NGG3 77 aa5.02□□□□□ -1.61
VPS35-206ENST00000565228 H3BMG7 143 aa5.02□□□□□ -1.61
VPS35-206ENST00000565228 TAX1BP3O14907 124 aa5.02□□□□□ -1.61
VPS35-206ENST00000565228 TRACP01848 142 aa5.02□□□□□ -1.61
VPS35-206ENST00000565228 BATFQ16520 125 aa5.02□□□□□ -1.61
VPS35-206ENST00000565228 Q96NJ1 140 aa5.02□□□□□ -1.61
VPS35-206ENST00000565228 ORMDL1Q9P0S3 153 aa5.02□□□□□ -1.61
VPS35-206ENST00000565228 ASB16-AS1Q495Z4 193 aa5.01□□□□□ -1.61
VPS35-206ENST00000565228 Q6Q795 121 aa5.01□□□□□ -1.61
VPS35-206ENST00000565228 SCGB1C2P0DMR2 95 aa5□□□□□ -1.61
VPS35-206ENST00000565228 COX6CP09669 75 aa4.99□□□□□ -1.61
VPS35-206ENST00000565228 A0A087WSZ3 146 aa4.98□□□□□ -1.61
VPS35-206ENST00000565228 DNAL4O96015 105 aa4.98□□□□□ -1.61
VPS35-206ENST00000565228 KRTAP4-7Q9BYR0 210 aa4.98□□□□□ -1.61
VPS35-206ENST00000565228 CRCT1Q9UGL9 99 aa4.98□□□□□ -1.61
VPS35-206ENST00000565228 TRBV7-4A0A0J9YYF1 115 aa4.97□□□□□ -1.61
VPS35-206ENST00000565228 C9orf118A6NHY6 69 aa4.97□□□□□ -1.61
VPS35-206ENST00000565228 TMEM256-PLSCR3K7ERE1 68 aa4.97□□□□□ -1.61
VPS35-206ENST00000565228 BAALC-AS2P0C853 105 aa4.97□□□□□ -1.61
VPS35-206ENST00000565228 UBE2V1Q13404 147 aa4.97□□□□□ -1.61
VPS35-206ENST00000565228 TEN1Q86WV5 123 aa4.97□□□□□ -1.61
VPS35-206ENST00000565228 SNCGO76070 127 aa4.95□□□□□ -1.62
VPS35-206ENST00000565228 MTURNQ8N3F0 131 aa4.95□□□□□ -1.62
VPS35-206ENST00000565228 ANKRD29Q8N6D5 301 aa4.95□□□□□ -1.62
VPS35-206ENST00000565228 A0A1W2PPM0 123 aa4.94□□□□□ -1.62
VPS35-206ENST00000565228 ATXN8Q156A1 80 aa4.94□□□□□ -1.62
VPS35-206ENST00000565228 KRTAP19-2Q3LHN2 52 aa4.94□□□□□ -1.62
VPS35-206ENST00000565228 PCOTHQ58A44 107 aa4.93□□□□□ -1.62
VPS35-206ENST00000565228 CCKP06307 115 aa4.92□□□□□ -1.62
VPS35-206ENST00000565228 DEFB116Q30KQ4 102 aa4.92□□□□□ -1.62
VPS35-206ENST00000565228 NOTCH2NLQ7Z3S9 236 aa4.92□□□□□ -1.62
VPS35-206ENST00000565228 OBSCN-AS1Q96MR7 158 aa4.92□□□□□ -1.62
VPS35-206ENST00000565228 LINC00472Q9H8W2 130 aa4.92□□□□□ -1.62
VPS35-206ENST00000565228 A0A0U1RQV1 116 aa4.91□□□□□ -1.62
VPS35-206ENST00000565228 C9JAW5 83 aa4.91□□□□□ -1.62
VPS35-206ENST00000565228 H3BQ85 93 aa4.91□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 157.5 ms