RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 F8WEM9 126 aa7.76□□□□□ -1.17
CLK3-214ENST00000564096 MTURNQ8N3F0 131 aa7.76□□□□□ -1.17
CLK3-214ENST00000564096 ANKRD29Q8N6D5 301 aa7.76□□□□□ -1.17
CLK3-214ENST00000564096 SPRR1BP22528 89 aa7.75□□□□□ -1.17
CLK3-214ENST00000564096 KIAA1109Q2LD37 5005 aa7.74□□□□□ -1.17
CLK3-214ENST00000564096 LINC01547P58512 204 aaPredicted RBP7.74□□□□□ -1.17
CLK3-214ENST00000564096 KRTAP10-4P60372 401 aaPredicted RBP7.74□□□□□ -1.17
CLK3-214ENST00000564096 LINC00483Q53H64 154 aa7.74□□□□□ -1.17
CLK3-214ENST00000564096 LAMTOR3Q9UHA4 124 aa7.74□□□□□ -1.17
CLK3-214ENST00000564096 Q8N377 158 aa7.73□□□□□ -1.17
CLK3-214ENST00000564096 PRO0461Q9UI25 63 aa7.73□□□□□ -1.17
CLK3-214ENST00000564096 HSPG2P98160 4391 aa7.73□□□□□ -1.17
CLK3-214ENST00000564096 JMJD7-PLA2G4BH0Y9G9 81 aa7.71□□□□□ -1.18
CLK3-214ENST00000564096 NDUFV3P56181 108 aaKnown RBP7.71□□□□□ -1.18
CLK3-214ENST00000564096 FAM229BQ4G0N7 80 aa7.71□□□□□ -1.18
CLK3-214ENST00000564096 LINC01600Q96MT4 127 aa7.71□□□□□ -1.18
CLK3-214ENST00000564096 LORP23490 312 aaPredicted RBP7.7□□□□□ -1.18
CLK3-214ENST00000564096 VPS13BQ7Z7G8 4022 aa7.69□□□□□ -1.18
CLK3-214ENST00000564096 FAT1Q14517 4588 aa7.69□□□□□ -1.18
CLK3-214ENST00000564096 C9orf153Q5TBE3 101 aa7.68□□□□□ -1.18
CLK3-214ENST00000564096 TEN1Q86WV5 123 aa7.68□□□□□ -1.18
CLK3-214ENST00000564096 C3orf22Q8N5N4 141 aa7.68□□□□□ -1.18
CLK3-214ENST00000564096 CRYGAP11844 174 aa7.67□□□□□ -1.18
CLK3-214ENST00000564096 C21orf62-AS1Q17RA5 79 aa7.67□□□□□ -1.18
CLK3-214ENST00000564096 Q8NBF4 154 aa7.67□□□□□ -1.18
CLK3-214ENST00000564096 IGLV9-49A0A0B4J1Y8 123 aa7.66□□□□□ -1.18
CLK3-214ENST00000564096 A0A1B0GV72 72 aa7.66□□□□□ -1.18
CLK3-214ENST00000564096 RBM3P98179 157 aaKnown RBP7.66□□□□□ -1.18
CLK3-214ENST00000564096 SMIM29Q86T20 159 aa7.66□□□□□ -1.18
CLK3-214ENST00000564096 KRTAP1-4P0C5Y4 121 aa7.65□□□□□ -1.18
CLK3-214ENST00000564096 Q6JHZ5 121 aa7.65□□□□□ -1.18
CLK3-214ENST00000564096 DSCR8Q96T75 97 aa7.65□□□□□ -1.18
CLK3-214ENST00000564096 MOBPQ13875 183 aa7.64□□□□□ -1.19
CLK3-214ENST00000564096 ETDBQ3ZM63 59 aa7.64□□□□□ -1.19
CLK3-214ENST00000564096 ANAPC11Q9NYG5 84 aa7.64□□□□□ -1.19
CLK3-214ENST00000564096 IGLV8-61A0A075B6I0 122 aa7.63□□□□□ -1.19
CLK3-214ENST00000564096 PDE6GP18545 87 aa7.63□□□□□ -1.19
CLK3-214ENST00000564096 OBSCN-AS1Q96MR7 158 aa7.62□□□□□ -1.19
CLK3-214ENST00000564096 C14orf132Q9NPU4 83 aa7.61□□□□□ -1.19
CLK3-214ENST00000564096 LOC110117498A0A087WWA1 95 aa7.6□□□□□ -1.19
CLK3-214ENST00000564096 A0A087X002 238 aa7.6□□□□□ -1.19
CLK3-214ENST00000564096 TRBV7-4A0A0J9YYF1 115 aa7.59□□□□□ -1.19
CLK3-214ENST00000564096 SSBP3-AS1Q7Z2R9 100 aa7.59□□□□□ -1.19
CLK3-214ENST00000564096 TYMSOSQ8TAI1 123 aa7.59□□□□□ -1.19
CLK3-214ENST00000564096 IGFL1Q6UW32 110 aa7.58□□□□□ -1.2
CLK3-214ENST00000564096 KRTAP13-2Q52LG2 175 aa7.57□□□□□ -1.2
CLK3-214ENST00000564096 PRR26Q8N8Z3 221 aa7.57□□□□□ -1.2
CLK3-214ENST00000564096 J3QR89 54 aa7.56□□□□□ -1.2
CLK3-214ENST00000564096 CCKP06307 115 aa7.56□□□□□ -1.2
CLK3-214ENST00000564096 Q6ZQT0 140 aa7.56□□□□□ -1.2
CLK3-214ENST00000564096 VPS25Q9BRG1 176 aa7.56□□□□□ -1.2
CLK3-214ENST00000564096 PKHD1L1Q86WI1 4243 aa7.56□□□□□ -1.2
CLK3-214ENST00000564096 A0A1B0GW54 56 aa7.53□□□□□ -1.2
CLK3-214ENST00000564096 OXTP01178 125 aa7.53□□□□□ -1.2
CLK3-214ENST00000564096 CD164Q04900 197 aa7.53□□□□□ -1.2
CLK3-214ENST00000564096 Q6Q795 121 aa7.53□□□□□ -1.2
CLK3-214ENST00000564096 SRRM2Q9UQ35 2752 aaKnown RBP7.53□□□□□ -1.2
CLK3-214ENST00000564096 SPAG11AQ6PDA7 123 aa7.51□□□□□ -1.21
CLK3-214ENST00000564096 LINC00304Q8N9R0 145 aa7.51□□□□□ -1.21
CLK3-214ENST00000564096 KRTAP4-5Q9BYR2 181 aa7.51□□□□□ -1.21
CLK3-214ENST00000564096 A0A1W2PNM2 257 aa7.5□□□□□ -1.21
CLK3-214ENST00000564096 SS18L2Q9UHA2 77 aa7.5□□□□□ -1.21
CLK3-214ENST00000564096 TRBV7-7A0A0K0K1E9 115 aa7.49□□□□□ -1.21
CLK3-214ENST00000564096 FAM240AA0A1B0GVK7 77 aa7.49□□□□□ -1.21
CLK3-214ENST00000564096 LIMD2Q9BT23 127 aa7.49□□□□□ -1.21
CLK3-214ENST00000564096 A0A0G2JQZ4 141 aa7.48□□□□□ -1.21
CLK3-214ENST00000564096 K7ERU9 68 aa7.48□□□□□ -1.21
CLK3-214ENST00000564096 ACYP1P07311 99 aa7.48□□□□□ -1.21
CLK3-214ENST00000564096 HRCT1Q6UXD1 115 aa7.48□□□□□ -1.21
CLK3-214ENST00000564096 ABCA13Q86UQ4 5058 aa7.48□□□□□ -1.21
CLK3-214ENST00000564096 A0A087WSZ3 146 aa7.47□□□□□ -1.21
CLK3-214ENST00000564096 SPINK1P00995 79 aa7.47□□□□□ -1.21
CLK3-214ENST00000564096 RPS29P62273 56 aaKnown RBP7.46□□□□□ -1.22
CLK3-214ENST00000564096 KRTAP29-1A8MX34 341 aaPredicted RBP7.45□□□□□ -1.22
CLK3-214ENST00000564096 KRTAP10-8P60410 259 aa7.44□□□□□ -1.22
CLK3-214ENST00000564096 UBL5Q9BZL1 73 aa7.44□□□□□ -1.22
CLK3-214ENST00000564096 Q5XG85 94 aa7.41□□□□□ -1.22
CLK3-214ENST00000564096 FAT3Q8TDW7 4589 aa7.4□□□□□ -1.22
CLK3-214ENST00000564096 MT1HL1P0DM35 61 aa7.4□□□□□ -1.22
CLK3-214ENST00000564096 NREPQ16612 68 aa7.4□□□□□ -1.22
CLK3-214ENST00000564096 FLG2Q5D862 2391 aaPredicted RBP7.4□□□□□ -1.23
CLK3-214ENST00000564096 LINC00846Q9NV44 126 aa7.39□□□□□ -1.23
CLK3-214ENST00000564096 ASB16-AS1Q495Z4 193 aa7.38□□□□□ -1.23
CLK3-214ENST00000564096 Q6ZVQ6 151 aa7.37□□□□□ -1.23
CLK3-214ENST00000564096 MYCBP2O75592 4640 aa7.37□□□□□ -1.23
CLK3-214ENST00000564096 LRP1Q07954 4544 aaKnown RBP7.36□□□□□ -1.23
CLK3-214ENST00000564096 ATP5EP2Q5VTU8 51 aa7.35□□□□□ -1.23
CLK3-214ENST00000564096 J3KT08 172 aa7.34□□□□□ -1.23
CLK3-214ENST00000564096 TNXBP22105 4242 aa7.32□□□□□ -1.24
CLK3-214ENST00000564096 BPY2O14599 106 aa7.32□□□□□ -1.24
CLK3-214ENST00000564096 SIGMAR1Q99720 223 aa7.32□□□□□ -1.24
CLK3-214ENST00000564096 LINC00643Q86TS7 51 aa7.31□□□□□ -1.24
CLK3-214ENST00000564096 LINC00472Q9H8W2 130 aa7.31□□□□□ -1.24
CLK3-214ENST00000564096 HERC1Q15751 4861 aa7.3□□□□□ -1.24
CLK3-214ENST00000564096 IGKV4-1P06312 121 aa7.29□□□□□ -1.24
CLK3-214ENST00000564096 CXCL6P80162 114 aa7.29□□□□□ -1.24
CLK3-214ENST00000564096 C1orf195Q5TG92 126 aa7.29□□□□□ -1.24
CLK3-214ENST00000564096 Q96NJ1 140 aa7.29□□□□□ -1.24
CLK3-214ENST00000564096 CDIP1Q9H305 208 aa7.28□□□□□ -1.24
CLK3-214ENST00000564096 NDUFB1O75438 58 aa7.27□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 161.4 ms