RNA–Protein interactions for RNA: ENST00000561258.1

VPS13C-210, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 3

Gene VPS13C, Length 614 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-210ENST00000561258 ZNF818PQ6ZRF7 136 aa1.62□□□□□ -2.15
VPS13C-210ENST00000561258 CFDP00746 253 aaPredicted RBP1.61□□□□□ -2.15
VPS13C-210ENST00000561258 LINC00694P0DN24 101 aa1.61□□□□□ -2.15
VPS13C-210ENST00000561258 HIST1H1DP16402 221 aaKnown RBP1.61□□□□□ -2.15
VPS13C-210ENST00000561258 PKIAP61925 76 aa1.61□□□□□ -2.15
VPS13C-210ENST00000561258 FAM107BQ9H098 131 aa1.61□□□□□ -2.15
VPS13C-210ENST00000561258 NDUFA12Q9UI09 145 aa1.61□□□□□ -2.15
VPS13C-210ENST00000561258 C22orf24Q9Y442 160 aa1.61□□□□□ -2.15
VPS13C-210ENST00000561258 TRAV23DV6A0A075B6W5 121 aa1.6□□□□□ -2.15
VPS13C-210ENST00000561258 RPS25P62851 125 aaKnown RBP1.6□□□□□ -2.15
VPS13C-210ENST00000561258 SPATA45Q537H7 98 aa1.6□□□□□ -2.15
VPS13C-210ENST00000561258 C9orf116Q5BN46 136 aaPredicted RBP1.6□□□□□ -2.15
VPS13C-210ENST00000561258 CFAP126Q5VTH2 177 aa1.6□□□□□ -2.15
VPS13C-210ENST00000561258 CEBPZOSA8MTT3 80 aa1.59□□□□□ -2.15
VPS13C-210ENST00000561258 MT2AP02795 61 aa1.59□□□□□ -2.15
VPS13C-210ENST00000561258 PDE6GP18545 87 aa1.59□□□□□ -2.15
VPS13C-210ENST00000561258 SPRR2EP22531 72 aa1.59□□□□□ -2.15
VPS13C-210ENST00000561258 SPRR2BP35325 72 aa1.59□□□□□ -2.15
VPS13C-210ENST00000561258 SPRR2AP35326 72 aa1.59□□□□□ -2.15
VPS13C-210ENST00000561258 GNG2P59768 71 aa1.59□□□□□ -2.15
VPS13C-210ENST00000561258 CLLU1Q5K131 121 aa1.59□□□□□ -2.15
VPS13C-210ENST00000561258 CSAG1Q6PB30 78 aa1.59□□□□□ -2.15
VPS13C-210ENST00000561258 PFDN5Q99471 154 aa1.59□□□□□ -2.15
VPS13C-210ENST00000561258 TRGV9Q99603 122 aa1.59□□□□□ -2.15
VPS13C-210ENST00000561258 LSM2Q9Y333 95 aaKnown RBP1.59□□□□□ -2.15
VPS13C-210ENST00000561258 FAM236AA0A1B0GUQ0 79 aa1.58□□□□□ -2.16
VPS13C-210ENST00000561258 FAM236BA0A1B0GV22 79 aa1.58□□□□□ -2.16
VPS13C-210ENST00000561258 J3QR89 54 aa1.58□□□□□ -2.16
VPS13C-210ENST00000561258 NMBP08949 121 aa1.58□□□□□ -2.16
VPS13C-210ENST00000561258 ARL14EPLP0DKL9 152 aa1.58□□□□□ -2.16
VPS13C-210ENST00000561258 UBE2D3P61077 147 aa1.58□□□□□ -2.16
VPS13C-210ENST00000561258 NCS1P62166 190 aa1.58□□□□□ -2.16
VPS13C-210ENST00000561258 OCIAD2Q56VL3 154 aa1.58□□□□□ -2.16
VPS13C-210ENST00000561258 PAIP2BQ9ULR5 123 aaKnown RBP1.58□□□□□ -2.16
VPS13C-210ENST00000561258 FAM24AA6NFZ4 105 aa1.57□□□□□ -2.16
VPS13C-210ENST00000561258 NCR2O95944 276 aa1.57□□□□□ -2.16
VPS13C-210ENST00000561258 MT1FP04733 61 aa1.57□□□□□ -2.16
VPS13C-210ENST00000561258 SPAG11AQ6PDA7 123 aa1.57□□□□□ -2.16
VPS13C-210ENST00000561258 ATG5Q9H1Y0 275 aa1.57□□□□□ -2.16
VPS13C-210ENST00000561258 GVQW2A0A096LPI5 108 aaPredicted RBP1.56□□□□□ -2.16
VPS13C-210ENST00000561258 IL5P05113 134 aa1.56□□□□□ -2.16
VPS13C-210ENST00000561258 ADCYAP1P18509 176 aa1.56□□□□□ -2.16
VPS13C-210ENST00000561258 NMSQ5H8A3 153 aa1.56□□□□□ -2.16
VPS13C-210ENST00000561258 DEFB107AQ8IZN7 70 aa1.56□□□□□ -2.16
VPS13C-210ENST00000561258 AGPAT4-IT1Q9H0P7 198 aa1.56□□□□□ -2.16
VPS13C-210ENST00000561258 DSTQ03001 7570 aaKnown RBP1.56□□□□□ -2.16
VPS13C-210ENST00000561258 TRBV20-1A0A075B6N2 111 aa1.55□□□□□ -2.16
VPS13C-210ENST00000561258 K7ERU9 68 aa1.55□□□□□ -2.16
VPS13C-210ENST00000561258 S100A10P60903 97 aa1.55□□□□□ -2.16
VPS13C-210ENST00000561258 ATP11AUNQ6ZP68 121 aa1.55□□□□□ -2.16
VPS13C-210ENST00000561258 AHNAK2Q8IVF2 5795 aa1.55□□□□□ -2.16
VPS13C-210ENST00000561258 TRBV7-3A0A075B6L6 115 aa1.54□□□□□ -2.16
VPS13C-210ENST00000561258 RBAKDNA6NC62 111 aa1.54□□□□□ -2.16
VPS13C-210ENST00000561258 M0R3E3 92 aa1.54□□□□□ -2.16
VPS13C-210ENST00000561258 NCR3O14931 201 aa1.54□□□□□ -2.16
VPS13C-210ENST00000561258 SPRR2DP22532 72 aa1.54□□□□□ -2.16
VPS13C-210ENST00000561258 UBE2D2P62837 147 aa1.54□□□□□ -2.16
VPS13C-210ENST00000561258 NPVFQ9HCQ7 196 aa1.54□□□□□ -2.16
VPS13C-210ENST00000561258 CACFD1Q9UGQ2 172 aa1.54□□□□□ -2.16
VPS13C-210ENST00000561258 ERG28Q9UKR5 140 aa1.54□□□□□ -2.16
VPS13C-210ENST00000561258 TRBV25-1A0A075B6N4 114 aa1.53□□□□□ -2.16
VPS13C-210ENST00000561258 H3BQ15 152 aa1.53□□□□□ -2.16
VPS13C-210ENST00000561258 IGKCP01834 107 aa1.53□□□□□ -2.16
VPS13C-210ENST00000561258 FAM74A4Q5TZK3 123 aa1.53□□□□□ -2.16
VPS13C-210ENST00000561258 Q6AWC8 147 aa1.53□□□□□ -2.16
VPS13C-210ENST00000561258 CYP2G1PQ6ZSU1 146 aa1.53□□□□□ -2.16
VPS13C-210ENST00000561258 SNX29P2Q8IUI4 249 aa1.53□□□□□ -2.16
VPS13C-210ENST00000561258 FXYD6Q9H0Q3 95 aa1.53□□□□□ -2.16
VPS13C-210ENST00000561258 TRAV21A0A0B4J279 112 aa1.52□□□□□ -2.17
VPS13C-210ENST00000561258 TRBV10-1A0A0K0K1A3 114 aa1.52□□□□□ -2.17
VPS13C-210ENST00000561258 PDCD5O14737 125 aa1.52□□□□□ -2.17
VPS13C-210ENST00000561258 IGLC2P0DOY2 106 aa1.52□□□□□ -2.17
VPS13C-210ENST00000561258 IL7P13232 177 aa1.52□□□□□ -2.17
VPS13C-210ENST00000561258 SPRR2FQ96RM1 72 aa1.52□□□□□ -2.17
VPS13C-210ENST00000561258 VPS25Q9BRG1 176 aa1.52□□□□□ -2.17
VPS13C-210ENST00000561258 C20orf202A1L168 122 aa1.51□□□□□ -2.17
VPS13C-210ENST00000561258 EFCAB10A6NFE3 127 aa1.51□□□□□ -2.17
VPS13C-210ENST00000561258 C9orf92A6NGG3 77 aa1.51□□□□□ -2.17
VPS13C-210ENST00000561258 SPINK1P00995 79 aa1.51□□□□□ -2.17
VPS13C-210ENST00000561258 AQP10Q96PS8 301 aa1.51□□□□□ -2.17
VPS13C-210ENST00000561258 BCE1O60756 84 aa1.5□□□□□ -2.17
VPS13C-210ENST00000561258 IAPPP10997 89 aa1.5□□□□□ -2.17
VPS13C-210ENST00000561258 C10orf113Q5VZT2 155 aa1.5□□□□□ -2.17
VPS13C-210ENST00000561258 NAA60Q9H7X0 242 aa1.5□□□□□ -2.17
VPS13C-210ENST00000561258 LENEPQ9Y5L5 61 aa1.5□□□□□ -2.17
VPS13C-210ENST00000561258 TRBV6-1A0A0K0K1D8 114 aa1.49□□□□□ -2.17
VPS13C-210ENST00000561258 F6UZH7 168 aa1.49□□□□□ -2.17
VPS13C-210ENST00000561258 IQCJQ1A5X6 159 aa1.49□□□□□ -2.17
VPS13C-210ENST00000561258 KRTAP5-10Q6L8G5 202 aa1.49□□□□□ -2.17
VPS13C-210ENST00000561258 ATOH7Q8N100 152 aa1.49□□□□□ -2.17
VPS13C-210ENST00000561258 DMAC1Q96GE9 116 aa1.49□□□□□ -2.17
VPS13C-210ENST00000561258 TCRBV3S1A0A5B6 114 aa1.48□□□□□ -2.17
VPS13C-210ENST00000561258 ZNF56Q15929 161 aa1.48□□□□□ -2.17
VPS13C-210ENST00000561258 PPDPFLQ8WWR9 84 aa1.48□□□□□ -2.17
VPS13C-210ENST00000561258 NMES1Q9C002 83 aa1.48□□□□□ -2.17
VPS13C-210ENST00000561258 MRPL35Q9NZE8 188 aaKnown RBP1.48□□□□□ -2.17
VPS13C-210ENST00000561258 LOC100130705A0A1B0GUX0 176 aa1.47□□□□□ -2.17
VPS13C-210ENST00000561258 PYYP10082 97 aa1.47□□□□□ -2.17
VPS13C-210ENST00000561258 RRAS2P62070 204 aaPredicted RBP1.47□□□□□ -2.17
VPS13C-210ENST00000561258 MIC13Q5XKP0 118 aa1.47□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 127.8 ms