RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 LCE2BO14633 110 aa3.37□□□□□ -1.87
VPS13C-209ENST00000560637 MT-ATP8P03928 68 aa3.37□□□□□ -1.87
VPS13C-209ENST00000560637 Q8NBF4 154 aa3.37□□□□□ -1.87
VPS13C-209ENST00000560637 ANAPC13Q9BS18 74 aa3.37□□□□□ -1.87
VPS13C-209ENST00000560637 LINC00846Q9NV44 126 aa3.37□□□□□ -1.87
VPS13C-209ENST00000560637 FAM236AA0A1B0GUQ0 79 aa3.36□□□□□ -1.87
VPS13C-209ENST00000560637 FAM236BA0A1B0GV22 79 aa3.36□□□□□ -1.87
VPS13C-209ENST00000560637 PDE6GP18545 87 aa3.36□□□□□ -1.87
VPS13C-209ENST00000560637 LCE2AQ5TA79 106 aaPredicted RBP3.36□□□□□ -1.87
VPS13C-209ENST00000560637 PLAC8Q9NZF1 115 aa3.36□□□□□ -1.87
VPS13C-209ENST00000560637 H3BQ85 93 aa3.35□□□□□ -1.87
VPS13C-209ENST00000560637 SS18L2Q9UHA2 77 aa3.35□□□□□ -1.87
VPS13C-209ENST00000560637 HUWE1Q7Z6Z7 4374 aaKnown RBP3.35□□□□□ -1.87
VPS13C-209ENST00000560637 C9orf92A6NGG3 77 aa3.35□□□□□ -1.87
VPS13C-209ENST00000560637 SPRR4Q96PI1 79 aa3.34□□□□□ -1.87
VPS13C-209ENST00000560637 PRKDCP78527 4128 aaKnown RBP3.34□□□□□ -1.87
VPS13C-209ENST00000560637 Q6JHZ5 121 aa3.34□□□□□ -1.87
VPS13C-209ENST00000560637 IGFL1Q6UW32 110 aa3.34□□□□□ -1.87
VPS13C-209ENST00000560637 KRTAP7-1Q8IUC3 87 aa3.34□□□□□ -1.87
VPS13C-209ENST00000560637 ACYP1P07311 99 aa3.33□□□□□ -1.88
VPS13C-209ENST00000560637 LINC01547P58512 204 aaPredicted RBP3.33□□□□□ -1.88
VPS13C-209ENST00000560637 Q6ZVQ6 151 aa3.33□□□□□ -1.88
VPS13C-209ENST00000560637 LINC00304Q8N9R0 145 aa3.33□□□□□ -1.88
VPS13C-209ENST00000560637 PRO0461Q9UI25 63 aa3.33□□□□□ -1.88
VPS13C-209ENST00000560637 Q75L30 129 aa3.33□□□□□ -1.88
VPS13C-209ENST00000560637 LINC00643Q86TS7 51 aa3.32□□□□□ -1.88
VPS13C-209ENST00000560637 TRBV7-6A0A0J9YX20 115 aa3.32□□□□□ -1.88
VPS13C-209ENST00000560637 IGLV5-37A0A075B6J1 123 aa3.31□□□□□ -1.88
VPS13C-209ENST00000560637 DNAH9Q9NYC9 4486 aa3.31□□□□□ -1.88
VPS13C-209ENST00000560637 Q6ZQT0 140 aa3.31□□□□□ -1.88
VPS13C-209ENST00000560637 LIMD2Q9BT23 127 aa3.3□□□□□ -1.88
VPS13C-209ENST00000560637 A0A087X002 238 aa3.3□□□□□ -1.88
VPS13C-209ENST00000560637 A0A1W2PNM2 257 aa3.29□□□□□ -1.88
VPS13C-209ENST00000560637 OBSCN-AS1Q96MR7 158 aa3.29□□□□□ -1.88
VPS13C-209ENST00000560637 DSCR10P59022 87 aa3.28□□□□□ -1.88
VPS13C-209ENST00000560637 C20orf197Q8N268 126 aa3.28□□□□□ -1.88
VPS13C-209ENST00000560637 Q96NJ1 140 aa3.28□□□□□ -1.88
VPS13C-209ENST00000560637 SPRR1AP35321 89 aa3.28□□□□□ -1.88
VPS13C-209ENST00000560637 C5orf47Q569G3 176 aa3.28□□□□□ -1.88
VPS13C-209ENST00000560637 CASC2Q6XLA1 102 aa3.28□□□□□ -1.88
VPS13C-209ENST00000560637 SNURFQ9Y675 71 aa3.28□□□□□ -1.88
VPS13C-209ENST00000560637 IGKV2D-30A0A075B6S6 120 aa3.28□□□□□ -1.89
VPS13C-209ENST00000560637 IGKV2-30P06310 120 aa3.28□□□□□ -1.89
VPS13C-209ENST00000560637 Q6Q795 121 aa3.28□□□□□ -1.89
VPS13C-209ENST00000560637 MP68P56378 58 aa3.27□□□□□ -1.89
VPS13C-209ENST00000560637 PLECQ15149 4684 aaKnown RBP3.27□□□□□ -1.89
VPS13C-209ENST00000560637 HCG22E2RYF7 251 aa3.27□□□□□ -1.89
VPS13C-209ENST00000560637 K7EQZ3 153 aa3.27□□□□□ -1.89
VPS13C-209ENST00000560637 SSBP3-AS1Q7Z2R9 100 aa3.26□□□□□ -1.89
VPS13C-209ENST00000560637 PCOTHQ58A44 107 aa3.26□□□□□ -1.89
VPS13C-209ENST00000560637 SMIM29Q86T20 159 aa3.25□□□□□ -1.89
VPS13C-209ENST00000560637 OXTP01178 125 aa3.25□□□□□ -1.89
VPS13C-209ENST00000560637 LINC00208Q96KT6 92 aa3.25□□□□□ -1.89
VPS13C-209ENST00000560637 TRBV7-4A0A0J9YYF1 115 aa3.25□□□□□ -1.89
VPS13C-209ENST00000560637 TRBV7-7A0A0K0K1E9 115 aa3.25□□□□□ -1.89
VPS13C-209ENST00000560637 STARD9Q9P2P6 4700 aa3.24□□□□□ -1.89
VPS13C-209ENST00000560637 KRTAP4-16G5E9R7 235 aaPredicted RBP3.24□□□□□ -1.89
VPS13C-209ENST00000560637 LINC00313P59037 77 aa3.24□□□□□ -1.89
VPS13C-209ENST00000560637 IGLV5-48A0A075B6I7 105 aa3.24□□□□□ -1.89
VPS13C-209ENST00000560637 V9GYY9 64 aa3.24□□□□□ -1.89
VPS13C-209ENST00000560637 hDV103S1A0JD37 113 aa3.23□□□□□ -1.89
VPS13C-209ENST00000560637 LOC110117498A0A087WWA1 95 aa3.23□□□□□ -1.89
VPS13C-209ENST00000560637 ATOX1O00244 68 aa3.23□□□□□ -1.89
VPS13C-209ENST00000560637 DNAH3Q8TD57 4116 aa3.23□□□□□ -1.89
VPS13C-209ENST00000560637 IGLV7-46A0A075B6I9 117 aa3.23□□□□□ -1.89
VPS13C-209ENST00000560637 LOC100996750A0A140TA64 210 aa3.22□□□□□ -1.89
VPS13C-209ENST00000560637 FAM236DA0A1B0GTK5 79 aa3.22□□□□□ -1.89
VPS13C-209ENST00000560637 FAM240AA0A1B0GVK7 77 aa3.22□□□□□ -1.89
VPS13C-209ENST00000560637 SPINK1P00995 79 aa3.22□□□□□ -1.89
VPS13C-209ENST00000560637 FAM236CP0DP71 79 aa3.22□□□□□ -1.89
VPS13C-209ENST00000560637 ATP5EP2Q5VTU8 51 aa3.22□□□□□ -1.89
VPS13C-209ENST00000560637 KRTAP4-6Q9BYQ5 205 aa3.22□□□□□ -1.89
VPS13C-209ENST00000560637 DYNC2H1Q8NCM8 4307 aaKnown RBP3.22□□□□□ -1.89
VPS13C-209ENST00000560637 CMYA5Q8N3K9 4069 aa3.21□□□□□ -1.9
VPS13C-209ENST00000560637 J3KT08 172 aa3.21□□□□□ -1.9
VPS13C-209ENST00000560637 SEC61BP60468 96 aaKnown RBP3.21□□□□□ -1.9
VPS13C-209ENST00000560637 SPAG11AQ6PDA7 123 aa3.21□□□□□ -1.9
VPS13C-209ENST00000560637 Q8N1X5 172 aa3.21□□□□□ -1.9
VPS13C-209ENST00000560637 Q6ZSA8 131 aa3.2□□□□□ -1.9
VPS13C-209ENST00000560637 CHKB-CPT1BH3BT56 60 aa3.2□□□□□ -1.9
VPS13C-209ENST00000560637 KRTAP13-2Q52LG2 175 aa3.2□□□□□ -1.9
VPS13C-209ENST00000560637 ALMS1Q8TCU4 4167 aa3.2□□□□□ -1.9
VPS13C-209ENST00000560637 ATP11AUNQ6ZP68 121 aa3.2□□□□□ -1.9
VPS13C-209ENST00000560637 A0A1B0GVY2 172 aa3.19□□□□□ -1.9
VPS13C-209ENST00000560637 A8MWP4 228 aa3.19□□□□□ -1.9
VPS13C-209ENST00000560637 H0Y9P7 68 aa3.19□□□□□ -1.9
VPS13C-209ENST00000560637 DNAH10Q8IVF4 4471 aa3.19□□□□□ -1.9
VPS13C-209ENST00000560637 C8orf17Q9NRJ1 99 aa3.18□□□□□ -1.9
VPS13C-209ENST00000560637 A0A1B0GVX0 72 aa3.18□□□□□ -1.9
VPS13C-209ENST00000560637 FAM229BQ4G0N7 80 aa3.18□□□□□ -1.9
VPS13C-209ENST00000560637 PRR15Q8IV56 129 aa3.18□□□□□ -1.9
VPS13C-209ENST00000560637 CCDC179H3BU77 68 aa3.17□□□□□ -1.9
VPS13C-209ENST00000560637 COX6B2Q6YFQ2 88 aa3.17□□□□□ -1.9
VPS13C-209ENST00000560637 CXCL6P80162 114 aa3.17□□□□□ -1.9
VPS13C-209ENST00000560637 LYSTQ99698 3801 aa3.17□□□□□ -1.9
VPS13C-209ENST00000560637 LORP23490 312 aaPredicted RBP3.17□□□□□ -1.9
VPS13C-209ENST00000560637 KRTAP13-1Q8IUC0 172 aa3.16□□□□□ -1.9
VPS13C-209ENST00000560637 MRPL34Q9BQ48 92 aaKnown RBP3.16□□□□□ -1.9
VPS13C-209ENST00000560637 DNAH11Q96DT5 4516 aa3.16□□□□□ -1.9
VPS13C-209ENST00000560637 SPRR1BP22528 89 aa3.16□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 82 ms