RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 F8WEM9 126 aa5.49□□□□□ -1.53
LDLR-214ENST00000560628 hADV29S1A0JD25 119 aa5.48□□□□□ -1.53
LDLR-214ENST00000560628 TCL1BO95988 128 aa5.48□□□□□ -1.53
LDLR-214ENST00000560628 Q6ZQY7 126 aa5.48□□□□□ -1.53
LDLR-214ENST00000560628 MT1HP80294 61 aa5.47□□□□□ -1.53
LDLR-214ENST00000560628 LCE2DQ5TA82 110 aaPredicted RBP5.47□□□□□ -1.53
LDLR-214ENST00000560628 C12orf57Q99622 126 aa5.47□□□□□ -1.53
LDLR-214ENST00000560628 RPL37P61927 97 aaKnown RBP5.46□□□□□ -1.54
LDLR-214ENST00000560628 SCGB1D1O95968 90 aa5.45□□□□□ -1.54
LDLR-214ENST00000560628 S100A6P06703 90 aa5.45□□□□□ -1.54
LDLR-214ENST00000560628 OCIAD2Q56VL3 154 aa5.45□□□□□ -1.54
LDLR-214ENST00000560628 IGFL1Q6UW32 110 aa5.45□□□□□ -1.54
LDLR-214ENST00000560628 HIST1H4GQ99525 98 aa5.45□□□□□ -1.54
LDLR-214ENST00000560628 Q6JHZ5 121 aa5.44□□□□□ -1.54
LDLR-214ENST00000560628 TRBV7-7A0A0K0K1E9 115 aa5.43□□□□□ -1.54
LDLR-214ENST00000560628 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP5.43□□□□□ -1.54
LDLR-214ENST00000560628 CLEC2BQ92478 149 aa5.43□□□□□ -1.54
LDLR-214ENST00000560628 SNHG12Q9BXW3 62 aa5.43□□□□□ -1.54
LDLR-214ENST00000560628 H3BUT2 72 aa5.41□□□□□ -1.54
LDLR-214ENST00000560628 COX8AP10176 69 aa5.41□□□□□ -1.54
LDLR-214ENST00000560628 S100A1P23297 94 aa5.41□□□□□ -1.54
LDLR-214ENST00000560628 BVES-AS1Q5T3Y7 98 aa5.41□□□□□ -1.54
LDLR-214ENST00000560628 COX6B2Q6YFQ2 88 aa5.4□□□□□ -1.54
LDLR-214ENST00000560628 C14orf144Q96I85 54 aa5.4□□□□□ -1.54
LDLR-214ENST00000560628 M0R2T5 61 aa5.39□□□□□ -1.55
LDLR-214ENST00000560628 CFC1BP0CG36 223 aa5.39□□□□□ -1.55
LDLR-214ENST00000560628 CFC1P0CG37 223 aa5.39□□□□□ -1.55
LDLR-214ENST00000560628 OBSCN-AS1Q96MR7 158 aa5.39□□□□□ -1.55
LDLR-214ENST00000560628 DLEU1O43261 78 aa5.38□□□□□ -1.55
LDLR-214ENST00000560628 KRTAP10-6P60371 365 aaPredicted RBP5.38□□□□□ -1.55
LDLR-214ENST00000560628 PPDPFLQ8WWR9 84 aa5.38□□□□□ -1.55
LDLR-214ENST00000560628 RAB37Q96AX2 223 aa5.38□□□□□ -1.55
LDLR-214ENST00000560628 LST1O00453 97 aa5.37□□□□□ -1.55
LDLR-214ENST00000560628 CRCT1Q9UGL9 99 aa5.37□□□□□ -1.55
LDLR-214ENST00000560628 LORP23490 312 aaPredicted RBP5.36□□□□□ -1.55
LDLR-214ENST00000560628 ATP11AUNQ6ZP68 121 aa5.36□□□□□ -1.55
LDLR-214ENST00000560628 FAM218AQ96MZ4 157 aa5.36□□□□□ -1.55
LDLR-214ENST00000560628 PAM16Q9Y3D7 125 aa5.36□□□□□ -1.55
LDLR-214ENST00000560628 FSIP2Q5CZC0 6907 aa5.35□□□□□ -1.55
LDLR-214ENST00000560628 H0YGX0 51 aa5.35□□□□□ -1.55
LDLR-214ENST00000560628 SNCGO76070 127 aa5.35□□□□□ -1.55
LDLR-214ENST00000560628 SPATA45Q537H7 98 aa5.35□□□□□ -1.55
LDLR-214ENST00000560628 Q6Q795 121 aa5.35□□□□□ -1.55
LDLR-214ENST00000560628 Q75L30 129 aa5.35□□□□□ -1.55
LDLR-214ENST00000560628 Q96NJ1 140 aa5.35□□□□□ -1.55
LDLR-214ENST00000560628 NDUFV3P56181 108 aaKnown RBP5.34□□□□□ -1.55
LDLR-214ENST00000560628 A0A0B4J2C4 111 aa5.33□□□□□ -1.56
LDLR-214ENST00000560628 C2orf91Q6ZV80 131 aa5.33□□□□□ -1.56
LDLR-214ENST00000560628 HIGD1BQ9P298 99 aa5.33□□□□□ -1.56
LDLR-214ENST00000560628 FABP2P12104 132 aa5.32□□□□□ -1.56
LDLR-214ENST00000560628 TEN1Q86WV5 123 aa5.32□□□□□ -1.56
LDLR-214ENST00000560628 VAMP8Q9BV40 100 aa5.32□□□□□ -1.56
LDLR-214ENST00000560628 A0A087WSZ3 146 aa5.31□□□□□ -1.56
LDLR-214ENST00000560628 H3BMG7 143 aa5.31□□□□□ -1.56
LDLR-214ENST00000560628 CEND1Q8N111 149 aa5.31□□□□□ -1.56
LDLR-214ENST00000560628 SS18L2Q9UHA2 77 aa5.31□□□□□ -1.56
LDLR-214ENST00000560628 PRO1854Q9UHT4 67 aa5.3□□□□□ -1.56
LDLR-214ENST00000560628 FXYD2P54710 66 aa5.29□□□□□ -1.56
LDLR-214ENST00000560628 FLGP20930 4061 aaPredicted RBP5.27□□□□□ -1.57
LDLR-214ENST00000560628 A0A1B0GV72 72 aa5.27□□□□□ -1.57
LDLR-214ENST00000560628 A0A1B0GX51 115 aa5.27□□□□□ -1.57
LDLR-214ENST00000560628 A0A1W2PNM2 257 aa5.27□□□□□ -1.57
LDLR-214ENST00000560628 A8MUU9 505 aa5.27□□□□□ -1.57
LDLR-214ENST00000560628 TRIAP1O43715 76 aa5.27□□□□□ -1.57
LDLR-214ENST00000560628 DSCR10P59022 87 aa5.27□□□□□ -1.57
LDLR-214ENST00000560628 C20orf166-AS1Q96NR2 134 aa5.27□□□□□ -1.57
LDLR-214ENST00000560628 GHRHP01286 108 aa5.26□□□□□ -1.57
LDLR-214ENST00000560628 PSMB2P49721 201 aa5.24□□□□□ -1.57
LDLR-214ENST00000560628 ANKRD29Q8N6D5 301 aa5.24□□□□□ -1.57
LDLR-214ENST00000560628 SIGMAR1Q99720 223 aa5.24□□□□□ -1.57
LDLR-214ENST00000560628 K7ERJ3 54 aa5.23□□□□□ -1.57
LDLR-214ENST00000560628 IGKV4-1P06312 121 aa5.23□□□□□ -1.57
LDLR-214ENST00000560628 TRBV20-1A0A075B6N2 111 aa5.22□□□□□ -1.57
LDLR-214ENST00000560628 DNAL4O96015 105 aa5.22□□□□□ -1.57
LDLR-214ENST00000560628 LINC00313P59037 77 aa5.22□□□□□ -1.57
LDLR-214ENST00000560628 DEFB116Q30KQ4 102 aa5.22□□□□□ -1.57
LDLR-214ENST00000560628 ORMDL1Q9P0S3 153 aa5.22□□□□□ -1.57
LDLR-214ENST00000560628 HSD52Q0P140 79 aa5.21□□□□□ -1.58
LDLR-214ENST00000560628 NOTCH2NLQ7Z3S9 236 aa5.21□□□□□ -1.58
LDLR-214ENST00000560628 TRBV7-4A0A0J9YYF1 115 aa5.2□□□□□ -1.58
LDLR-214ENST00000560628 KRTAP16-1A8MUX0 517 aa5.2□□□□□ -1.58
LDLR-214ENST00000560628 PYY3Q5JQD4 70 aa5.2□□□□□ -1.58
LDLR-214ENST00000560628 H3BQ85 93 aa5.19□□□□□ -1.58
LDLR-214ENST00000560628 TMEM256-PLSCR3K7ERE1 68 aa5.19□□□□□ -1.58
LDLR-214ENST00000560628 COX6CP09669 75 aa5.19□□□□□ -1.58
LDLR-214ENST00000560628 CCKP06307 115 aa5.18□□□□□ -1.58
LDLR-214ENST00000560628 TRACP01848 142 aa5.17□□□□□ -1.58
LDLR-214ENST00000560628 KRTAP9-8Q9BYQ0 159 aa5.17□□□□□ -1.58
LDLR-214ENST00000560628 LINC00472Q9H8W2 130 aa5.17□□□□□ -1.58
LDLR-214ENST00000560628 IGHV6-1A0A0B4J1U7 121 aa5.16□□□□□ -1.58
LDLR-214ENST00000560628 FAM236DA0A1B0GTK5 79 aa5.16□□□□□ -1.58
LDLR-214ENST00000560628 FAM236CP0DP71 79 aa5.16□□□□□ -1.58
LDLR-214ENST00000560628 UBE2V1Q13404 147 aa5.16□□□□□ -1.58
LDLR-214ENST00000560628 VPS25Q9BRG1 176 aa5.16□□□□□ -1.58
LDLR-214ENST00000560628 SCGB1C2P0DMR2 95 aa5.15□□□□□ -1.59
LDLR-214ENST00000560628 UQCR10Q9UDW1 63 aa5.14□□□□□ -1.59
LDLR-214ENST00000560628 HRES1P13985 223 aa5.12□□□□□ -1.59
LDLR-214ENST00000560628 RBM3P98179 157 aaKnown RBP5.12□□□□□ -1.59
LDLR-214ENST00000560628 A0A1B0GVX0 72 aa5.11□□□□□ -1.59
LDLR-214ENST00000560628 BAALC-AS2P0C853 105 aa5.11□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 91.6 ms