RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 SRRM2Q9UQ35 2752 aaKnown RBP7.77□□□□□ -1.17
USP3-213ENST00000559711 C1orf137Q5JT78 98 aa7.76□□□□□ -1.17
USP3-213ENST00000559711 SCXQ7RTU7 201 aa7.76□□□□□ -1.17
USP3-213ENST00000559711 IGLV8-61A0A075B6I0 122 aa7.75□□□□□ -1.17
USP3-213ENST00000559711 ZNF861PO60384 105 aa7.74□□□□□ -1.17
USP3-213ENST00000559711 F8WEM9 126 aa7.73□□□□□ -1.17
USP3-213ENST00000559711 SCGB1A1P11684 91 aa7.73□□□□□ -1.17
USP3-213ENST00000559711 TRBV7-7A0A0K0K1E9 115 aa7.73□□□□□ -1.17
USP3-213ENST00000559711 Q6Q795 121 aa7.73□□□□□ -1.17
USP3-213ENST00000559711 UBL5Q9BZL1 73 aa7.73□□□□□ -1.17
USP3-213ENST00000559711 A0A1B0GW54 56 aa7.72□□□□□ -1.17
USP3-213ENST00000559711 Q6JHZ5 121 aa7.72□□□□□ -1.17
USP3-213ENST00000559711 A0A1B0GVY2 172 aa7.71□□□□□ -1.18
USP3-213ENST00000559711 A0A1W2PNM2 257 aa7.71□□□□□ -1.18
USP3-213ENST00000559711 IGLV7-43P04211 117 aa7.71□□□□□ -1.18
USP3-213ENST00000559711 SPRR4Q96PI1 79 aa7.71□□□□□ -1.18
USP3-213ENST00000559711 IMUPQ9GZP8 106 aa7.71□□□□□ -1.18
USP3-213ENST00000559711 LRP1BQ9NZR2 4599 aa7.7□□□□□ -1.18
USP3-213ENST00000559711 LINC00483Q53H64 154 aa7.7□□□□□ -1.18
USP3-213ENST00000559711 Q8NBF4 154 aa7.7□□□□□ -1.18
USP3-213ENST00000559711 ZNF706Q9Y5V0 76 aaPredicted RBP7.7□□□□□ -1.18
USP3-213ENST00000559711 RYR2Q92736 4967 aa7.69□□□□□ -1.18
USP3-213ENST00000559711 IGFL1Q6UW32 110 aa7.69□□□□□ -1.18
USP3-213ENST00000559711 Q6ZVQ6 151 aa7.69□□□□□ -1.18
USP3-213ENST00000559711 KMT2CQ8NEZ4 4911 aaKnown RBP7.68□□□□□ -1.18
USP3-213ENST00000559711 HAMPP81172 84 aa7.67□□□□□ -1.18
USP3-213ENST00000559711 ATP5EP2Q5VTU8 51 aa7.67□□□□□ -1.18
USP3-213ENST00000559711 CRYGAP11844 174 aa7.67□□□□□ -1.18
USP3-213ENST00000559711 IGKV3D-7A0A0C4DH55 119 aa7.66□□□□□ -1.18
USP3-213ENST00000559711 PKHD1P08F94 4074 aa7.66□□□□□ -1.18
USP3-213ENST00000559711 PCP4P48539 62 aa7.64□□□□□ -1.19
USP3-213ENST00000559711 DYNC1H1Q14204 4646 aaKnown RBP7.64□□□□□ -1.19
USP3-213ENST00000559711 A0A0G2JQZ4 141 aa7.63□□□□□ -1.19
USP3-213ENST00000559711 NREPQ16612 68 aa7.63□□□□□ -1.19
USP3-213ENST00000559711 RPL37AP61513 92 aaKnown RBP7.62□□□□□ -1.19
USP3-213ENST00000559711 CXCL6P80162 114 aa7.62□□□□□ -1.19
USP3-213ENST00000559711 ANAPC11Q9NYG5 84 aa7.6□□□□□ -1.19
USP3-213ENST00000559711 IGLV9-49A0A0B4J1Y8 123 aa7.59□□□□□ -1.19
USP3-213ENST00000559711 C9orf153Q5TBE3 101 aa7.57□□□□□ -1.2
USP3-213ENST00000559711 A0A087WSZ3 146 aa7.56□□□□□ -1.2
USP3-213ENST00000559711 HIST1H4AP62805 103 aaKnown RBP7.56□□□□□ -1.2
USP3-213ENST00000559711 VPS13BQ7Z7G8 4022 aa7.55□□□□□ -1.2
USP3-213ENST00000559711 A0A087WVE0 104 aa7.55□□□□□ -1.2
USP3-213ENST00000559711 FAM236AA0A1B0GUQ0 79 aa7.55□□□□□ -1.2
USP3-213ENST00000559711 FAM236BA0A1B0GV22 79 aa7.55□□□□□ -1.2
USP3-213ENST00000559711 BPY2O14599 106 aa7.55□□□□□ -1.2
USP3-213ENST00000559711 MOBPQ13875 183 aa7.55□□□□□ -1.2
USP3-213ENST00000559711 APOBP04114 4563 aaKnown RBP7.53□□□□□ -1.2
USP3-213ENST00000559711 FAM229BQ4G0N7 80 aa7.52□□□□□ -1.21
USP3-213ENST00000559711 SSBP3-AS1Q7Z2R9 100 aa7.51□□□□□ -1.21
USP3-213ENST00000559711 ANAPC13Q9BS18 74 aa7.51□□□□□ -1.21
USP3-213ENST00000559711 KRTAP1-4P0C5Y4 121 aa7.5□□□□□ -1.21
USP3-213ENST00000559711 SMR3BP02814 79 aaPredicted RBP7.49□□□□□ -1.21
USP3-213ENST00000559711 IGKV4-1P06312 121 aa7.49□□□□□ -1.21
USP3-213ENST00000559711 SPINK6Q6UWN8 80 aa7.49□□□□□ -1.21
USP3-213ENST00000559711 RYR3Q15413 4870 aa7.49□□□□□ -1.21
USP3-213ENST00000559711 DSCR10P59022 87 aa7.48□□□□□ -1.21
USP3-213ENST00000559711 LINC00472Q9H8W2 130 aa7.48□□□□□ -1.21
USP3-213ENST00000559711 A0A087X002 238 aa7.47□□□□□ -1.21
USP3-213ENST00000559711 Q8N9L7 120 aa7.47□□□□□ -1.21
USP3-213ENST00000559711 ATOX1O00244 68 aa7.47□□□□□ -1.21
USP3-213ENST00000559711 KRTAP10-4P60372 401 aaPredicted RBP7.47□□□□□ -1.21
USP3-213ENST00000559711 CD164Q04900 197 aa7.47□□□□□ -1.21
USP3-213ENST00000559711 KRTAP13-2Q52LG2 175 aa7.47□□□□□ -1.21
USP3-213ENST00000559711 HRCT1Q6UXD1 115 aa7.46□□□□□ -1.22
USP3-213ENST00000559711 FAT1Q14517 4588 aa7.46□□□□□ -1.22
USP3-213ENST00000559711 SS18L2Q9UHA2 77 aa7.45□□□□□ -1.22
USP3-213ENST00000559711 DEFB116Q30KQ4 102 aa7.44□□□□□ -1.22
USP3-213ENST00000559711 PLA2G1BP04054 148 aaKnown RBP7.44□□□□□ -1.22
USP3-213ENST00000559711 J3KT08 172 aa7.42□□□□□ -1.22
USP3-213ENST00000559711 K7EQZ3 153 aa7.42□□□□□ -1.22
USP3-213ENST00000559711 Q96NJ1 140 aa7.42□□□□□ -1.22
USP3-213ENST00000559711 A8MWP4 228 aa7.39□□□□□ -1.23
USP3-213ENST00000559711 CDK2AP2O75956 126 aa7.39□□□□□ -1.23
USP3-213ENST00000559711 PRR15Q8IV56 129 aa7.38□□□□□ -1.23
USP3-213ENST00000559711 SERP2Q8N6R1 65 aa7.38□□□□□ -1.23
USP3-213ENST00000559711 ASB16-AS1Q495Z4 193 aa7.38□□□□□ -1.23
USP3-213ENST00000559711 COX7CP15954 63 aa7.37□□□□□ -1.23
USP3-213ENST00000559711 Q5XG85 94 aa7.37□□□□□ -1.23
USP3-213ENST00000559711 SMIM20Q8N5G0 67 aa7.37□□□□□ -1.23
USP3-213ENST00000559711 TYMSOSQ8TAI1 123 aa7.36□□□□□ -1.23
USP3-213ENST00000559711 FAM229AH3BQW9 127 aa7.35□□□□□ -1.23
USP3-213ENST00000559711 CCDC179H3BU77 68 aa7.35□□□□□ -1.23
USP3-213ENST00000559711 UQCRQO14949 82 aa7.35□□□□□ -1.23
USP3-213ENST00000559711 HCG22E2RYF7 251 aa7.35□□□□□ -1.23
USP3-213ENST00000559711 TRAV7A0A075B6U4 112 aa7.34□□□□□ -1.23
USP3-213ENST00000559711 NDUFB1O75438 58 aa7.34□□□□□ -1.23
USP3-213ENST00000559711 PRR26Q8N8Z3 221 aa7.34□□□□□ -1.23
USP3-213ENST00000559711 HSPG2P98160 4391 aa7.33□□□□□ -1.24
USP3-213ENST00000559711 KRTAP29-1A8MX34 341 aaPredicted RBP7.31□□□□□ -1.24
USP3-213ENST00000559711 SPINK1P00995 79 aa7.31□□□□□ -1.24
USP3-213ENST00000559711 C4orf48Q5BLP8 95 aa7.31□□□□□ -1.24
USP3-213ENST00000559711 OCR1Q9BZK8 76 aa7.31□□□□□ -1.24
USP3-213ENST00000559711 LIMD2Q9BT23 127 aa7.3□□□□□ -1.24
USP3-213ENST00000559711 MMP24-AS1A0A0U1RRL7 71 aa7.28□□□□□ -1.24
USP3-213ENST00000559711 A0A1B0GVX0 72 aa7.28□□□□□ -1.24
USP3-213ENST00000559711 Q5VSD8 79 aa7.28□□□□□ -1.24
USP3-213ENST00000559711 SPAG11AQ6PDA7 123 aa7.28□□□□□ -1.24
USP3-213ENST00000559711 RPS29P62273 56 aaKnown RBP7.28□□□□□ -1.24
USP3-213ENST00000559711 C1orf195Q5TG92 126 aa7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms