RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 SDIM1Q6ZPB5 146 aa3.23□□□□□ -1.89
LDLR-209ENST00000558528 LINC00337Q8N6G1 96 aa3.23□□□□□ -1.89
LDLR-209ENST00000558528 TYMSOSQ8TAI1 123 aa3.23□□□□□ -1.89
LDLR-209ENST00000558528 DIRC1Q969H9 104 aa3.23□□□□□ -1.89
LDLR-209ENST00000558528 TRAV23DV6A0A075B6W5 121 aa3.22□□□□□ -1.89
LDLR-209ENST00000558528 A0A087WYN8 130 aa3.22□□□□□ -1.89
LDLR-209ENST00000558528 NCR3O14931 201 aa3.22□□□□□ -1.89
LDLR-209ENST00000558528 TRACP01848 142 aa3.22□□□□□ -1.89
LDLR-209ENST00000558528 OCIAD2Q56VL3 154 aa3.22□□□□□ -1.89
LDLR-209ENST00000558528 C9orf129Q5T035 196 aaKnown RBP3.22□□□□□ -1.89
LDLR-209ENST00000558528 SMIM11BQ8TCY0 68 aa3.22□□□□□ -1.89
LDLR-209ENST00000558528 KCNQ1DNQ9H478 68 aa3.22□□□□□ -1.89
LDLR-209ENST00000558528 C22orf24Q9Y442 160 aa3.22□□□□□ -1.89
LDLR-209ENST00000558528 A0A096LNI7 61 aa3.21□□□□□ -1.9
LDLR-209ENST00000558528 IGKV2-24A0A0C4DH68 120 aa3.21□□□□□ -1.9
LDLR-209ENST00000558528 TRBV10-3A0A0K0K1G6 114 aa3.21□□□□□ -1.9
LDLR-209ENST00000558528 KRTAP16-1A8MUX0 517 aa3.21□□□□□ -1.9
LDLR-209ENST00000558528 ZNF73O43830 326 aaPredicted RBP3.21□□□□□ -1.9
LDLR-209ENST00000558528 COX7BP24311 80 aa3.21□□□□□ -1.9
LDLR-209ENST00000558528 VPS13BQ7Z7G8 4022 aa3.21□□□□□ -1.9
LDLR-209ENST00000558528 ETDCA0A1B0GVM5 59 aa3.2□□□□□ -1.9
LDLR-209ENST00000558528 hADV29S1A0JD25 119 aa3.2□□□□□ -1.9
LDLR-209ENST00000558528 LST1O00453 97 aa3.2□□□□□ -1.9
LDLR-209ENST00000558528 UBE2BP63146 152 aa3.2□□□□□ -1.9
LDLR-209ENST00000558528 LINC00167Q96N53 147 aa3.2□□□□□ -1.9
LDLR-209ENST00000558528 KRTAP4-8Q9BYQ9 185 aa3.2□□□□□ -1.9
LDLR-209ENST00000558528 H3BMG7 143 aa3.19□□□□□ -1.9
LDLR-209ENST00000558528 H3BT86 120 aa3.19□□□□□ -1.9
LDLR-209ENST00000558528 TMEM256-PLSCR3K7ERE1 68 aa3.19□□□□□ -1.9
LDLR-209ENST00000558528 BPY2O14599 106 aa3.19□□□□□ -1.9
LDLR-209ENST00000558528 TCL1BO95988 128 aa3.19□□□□□ -1.9
LDLR-209ENST00000558528 ELOF1P60002 83 aaKnown RBP3.19□□□□□ -1.9
LDLR-209ENST00000558528 LINC00575Q6W349 94 aa3.19□□□□□ -1.9
LDLR-209ENST00000558528 SPACA4Q8TDM5 124 aa3.19□□□□□ -1.9
LDLR-209ENST00000558528 NAA38Q9BRA0 125 aaKnown RBP3.19□□□□□ -1.9
LDLR-209ENST00000558528 ANAPC13Q9BS18 74 aa3.19□□□□□ -1.9
LDLR-209ENST00000558528 PLAC8Q9NZF1 115 aa3.19□□□□□ -1.9
LDLR-209ENST00000558528 A0A1W2PNN7 141 aa3.18□□□□□ -1.9
LDLR-209ENST00000558528 KRTAP29-1A8MX34 341 aaPredicted RBP3.18□□□□□ -1.9
LDLR-209ENST00000558528 J3QR89 54 aa3.18□□□□□ -1.9
LDLR-209ENST00000558528 SPRR1AP35321 89 aa3.18□□□□□ -1.9
LDLR-209ENST00000558528 C1orf195Q5TG92 126 aa3.18□□□□□ -1.9
LDLR-209ENST00000558528 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP3.18□□□□□ -1.9
LDLR-209ENST00000558528 PPDPFLQ8WWR9 84 aa3.18□□□□□ -1.9
LDLR-209ENST00000558528 LINC01600Q96MT4 127 aa3.18□□□□□ -1.9
LDLR-209ENST00000558528 ORMDL1Q9P0S3 153 aa3.18□□□□□ -1.9
LDLR-209ENST00000558528 FLG2Q5D862 2391 aaPredicted RBP3.18□□□□□ -1.9
LDLR-209ENST00000558528 FAT4Q6V0I7 4981 aa3.18□□□□□ -1.9
LDLR-209ENST00000558528 MUC2Q02817 5179 aa3.17□□□□□ -1.9
LDLR-209ENST00000558528 C9JAW5 83 aa3.17□□□□□ -1.9
LDLR-209ENST00000558528 C8orf87E5RJ46 101 aa3.17□□□□□ -1.9
LDLR-209ENST00000558528 BAALC-AS2P0C853 105 aa3.17□□□□□ -1.9
LDLR-209ENST00000558528 ANKRD29Q8N6D5 301 aa3.17□□□□□ -1.9
LDLR-209ENST00000558528 Q8NDZ9 215 aa3.17□□□□□ -1.9
LDLR-209ENST00000558528 LRP2P98164 4655 aa3.17□□□□□ -1.9
LDLR-209ENST00000558528 JMJD7-PLA2G4BH0Y9G9 81 aa3.16□□□□□ -1.9
LDLR-209ENST00000558528 MT3P25713 68 aa3.16□□□□□ -1.9
LDLR-209ENST00000558528 CLEC2BQ92478 149 aa3.16□□□□□ -1.9
LDLR-209ENST00000558528 RBM12B-AS1Q9P1G2 102 aa3.16□□□□□ -1.9
LDLR-209ENST00000558528 A0A1B0GVX0 72 aa3.15□□□□□ -1.91
LDLR-209ENST00000558528 BCE1O60756 84 aa3.15□□□□□ -1.91
LDLR-209ENST00000558528 MP68P56378 58 aa3.15□□□□□ -1.91
LDLR-209ENST00000558528 Q6ZRX8 168 aa3.15□□□□□ -1.91
LDLR-209ENST00000558528 PHF5AQ7RTV0 110 aaKnown RBP3.15□□□□□ -1.91
LDLR-209ENST00000558528 KRTAP7-1Q8IUC3 87 aa3.15□□□□□ -1.91
LDLR-209ENST00000558528 PDE6GP18545 87 aa3.14□□□□□ -1.91
LDLR-209ENST00000558528 Q6ZSA8 131 aa3.14□□□□□ -1.91
LDLR-209ENST00000558528 TEN1Q86WV5 123 aa3.14□□□□□ -1.91
LDLR-209ENST00000558528 C8orf17Q9NRJ1 99 aa3.14□□□□□ -1.91
LDLR-209ENST00000558528 PRO0461Q9UI25 63 aa3.14□□□□□ -1.91
LDLR-209ENST00000558528 ZNF706Q9Y5V0 76 aaPredicted RBP3.14□□□□□ -1.91
LDLR-209ENST00000558528 TEX49A0A1B0GTD5 131 aa3.13□□□□□ -1.91
LDLR-209ENST00000558528 K7ERU9 68 aa3.13□□□□□ -1.91
LDLR-209ENST00000558528 Q6ZQY7 126 aa3.13□□□□□ -1.91
LDLR-209ENST00000558528 CIRBP-AS1Q8TBR5 109 aa3.13□□□□□ -1.91
LDLR-209ENST00000558528 LAMTOR3Q9UHA4 124 aa3.13□□□□□ -1.91
LDLR-209ENST00000558528 PKHD1L1Q86WI1 4243 aa3.12□□□□□ -1.91
LDLR-209ENST00000558528 F8WEM9 126 aa3.12□□□□□ -1.91
LDLR-209ENST00000558528 ZNF861PO60384 105 aa3.12□□□□□ -1.91
LDLR-209ENST00000558528 ACYP1P07311 99 aa3.12□□□□□ -1.91
LDLR-209ENST00000558528 KRTAP10-1P60331 282 aa3.12□□□□□ -1.91
LDLR-209ENST00000558528 RBM3P98179 157 aaKnown RBP3.12□□□□□ -1.91
LDLR-209ENST00000558528 ETDBQ3ZM63 59 aa3.12□□□□□ -1.91
LDLR-209ENST00000558528 C1orf137Q5JT78 98 aa3.12□□□□□ -1.91
LDLR-209ENST00000558528 SMCR5Q8TEV8 140 aa3.12□□□□□ -1.91
LDLR-209ENST00000558528 IGLV5-48A0A075B6I7 105 aa3.11□□□□□ -1.91
LDLR-209ENST00000558528 A0A1B0GW54 56 aa3.11□□□□□ -1.91
LDLR-209ENST00000558528 PANO1I0J062 215 aa3.11□□□□□ -1.91
LDLR-209ENST00000558528 SCXQ7RTU7 201 aa3.11□□□□□ -1.91
LDLR-209ENST00000558528 DSCR8Q96T75 97 aa3.11□□□□□ -1.91
LDLR-209ENST00000558528 HIGD2AQ9BW72 106 aa3.11□□□□□ -1.91
LDLR-209ENST00000558528 PSORS1C2Q9UIG4 136 aa3.11□□□□□ -1.91
LDLR-209ENST00000558528 LRP1Q07954 4544 aaKnown RBP3.11□□□□□ -1.91
LDLR-209ENST00000558528 IGLV7-43P04211 117 aa3.1□□□□□ -1.91
LDLR-209ENST00000558528 FUSP35637 526 aaKnown RBP eCLIP3.1□□□□□ -1.91
LDLR-209ENST00000558528 RPL37AP61513 92 aaKnown RBP3.1□□□□□ -1.91
LDLR-209ENST00000558528 LCE3BQ5TA77 95 aa3.1□□□□□ -1.91
LDLR-209ENST00000558528 DEFB105AQ8NG35 78 aa3.1□□□□□ -1.91
LDLR-209ENST00000558528 OBSCN-AS1Q96MR7 158 aa3.1□□□□□ -1.91
LDLR-209ENST00000558528 Q9BRP9 147 aa3.1□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms