RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 ADGRG4Q8IZF6 3080 aa-2.14□□□□□ -2.75
VPS13C-205ENST00000558088 RAPGEF2Q9Y4G8 1499 aa-2.14□□□□□ -2.75
VPS13C-205ENST00000558088 CORTO00230 105 aa-2.15□□□□□ -2.75
VPS13C-205ENST00000558088 WFDC9Q8NEX5 89 aa-2.15□□□□□ -2.75
VPS13C-205ENST00000558088 CC2D2AQ9P2K1 1620 aa-2.16□□□□□ -2.75
VPS13C-205ENST00000558088 A0A1B0GUT8 65 aa-2.16□□□□□ -2.76
VPS13C-205ENST00000558088 IFI6P09912 130 aa-2.16□□□□□ -2.76
VPS13C-205ENST00000558088 DEFB130BP0DP73 79 aa-2.16□□□□□ -2.76
VPS13C-205ENST00000558088 DEFB130AP0DP74 79 aa-2.16□□□□□ -2.76
VPS13C-205ENST00000558088 TNRC6CQ9HCJ0 1690 aaKnown RBP-2.16□□□□□ -2.76
VPS13C-205ENST00000558088 PLXNC1O60486 1568 aa-2.17□□□□□ -2.76
VPS13C-205ENST00000558088 UQCRHLA0A096LP55 91 aa-2.17□□□□□ -2.76
VPS13C-205ENST00000558088 SMR3BP02814 79 aaPredicted RBP-2.17□□□□□ -2.76
VPS13C-205ENST00000558088 RPL13AP3Q6NVV1 102 aa-2.17□□□□□ -2.76
VPS13C-205ENST00000558088 GNG8Q9UK08 70 aa-2.17□□□□□ -2.76
VPS13C-205ENST00000558088 LRRC7Q96NW7 1537 aa-2.17□□□□□ -2.76
VPS13C-205ENST00000558088 NRKQ7Z2Y5 1582 aa-2.18□□□□□ -2.76
VPS13C-205ENST00000558088 NRXN1Q9ULB1 1477 aa-2.18□□□□□ -2.76
VPS13C-205ENST00000558088 FAUP35544 74 aaKnown RBP-2.18□□□□□ -2.76
VPS13C-205ENST00000558088 QSER1Q2KHR3 1735 aa-2.18□□□□□ -2.76
VPS13C-205ENST00000558088 CDC42BPGQ6DT37 1551 aa-2.19□□□□□ -2.76
VPS13C-205ENST00000558088 ANKRD36BQ8N2N9 1353 aa-2.19□□□□□ -2.76
VPS13C-205ENST00000558088 ATOX1O00244 68 aa-2.19□□□□□ -2.76
VPS13C-205ENST00000558088 CYB5AP00167 134 aa-2.19□□□□□ -2.76
VPS13C-205ENST00000558088 IAPPP10997 89 aa-2.19□□□□□ -2.76
VPS13C-205ENST00000558088 ABCC10Q5T3U5 1492 aa-2.2□□□□□ -2.76
VPS13C-205ENST00000558088 A0A1B0GV90 55 aa-2.2□□□□□ -2.76
VPS13C-205ENST00000558088 CHD1O14646 1710 aa-2.2□□□□□ -2.76
VPS13C-205ENST00000558088 PZPP20742 1482 aa-2.2□□□□□ -2.76
VPS13C-205ENST00000558088 PLGLAQ15195 96 aa-2.21□□□□□ -2.76
VPS13C-205ENST00000558088 SPHKAPQ2M3C7 1700 aa-2.21□□□□□ -2.76
VPS13C-205ENST00000558088 PKD1L3Q7Z443 1732 aa-2.21□□□□□ -2.76
VPS13C-205ENST00000558088 USP32Q8NFA0 1604 aa-2.21□□□□□ -2.76
VPS13C-205ENST00000558088 CRYBG1Q9Y4K1 1723 aa-2.22□□□□□ -2.76
VPS13C-205ENST00000558088 TRAV21A0A0B4J279 112 aa-2.22□□□□□ -2.76
VPS13C-205ENST00000558088 MRPS10P82664 201 aaKnown RBP-2.22□□□□□ -2.76
VPS13C-205ENST00000558088 CSMD2Q7Z408 3487 aa-2.23□□□□□ -2.77
VPS13C-205ENST00000558088 DLEU1O43261 78 aa-2.23□□□□□ -2.77
VPS13C-205ENST00000558088 ACYP1P07311 99 aa-2.23□□□□□ -2.77
VPS13C-205ENST00000558088 CDC42BPAQ5VT25 1732 aa-2.24□□□□□ -2.77
VPS13C-205ENST00000558088 S100A12P80511 92 aa-2.24□□□□□ -2.77
VPS13C-205ENST00000558088 MAGI3Q5TCQ9 1506 aa-2.25□□□□□ -2.77
VPS13C-205ENST00000558088 MT-ATP8P03928 68 aa-2.25□□□□□ -2.77
VPS13C-205ENST00000558088 TNP1P09430 55 aa-2.25□□□□□ -2.77
VPS13C-205ENST00000558088 KRTAP19-6Q3LI70 58 aa-2.25□□□□□ -2.77
VPS13C-205ENST00000558088 TIMM8BQ9Y5J9 83 aaPredicted RBP-2.25□□□□□ -2.77
VPS13C-205ENST00000558088 FREM2Q5SZK8 3169 aa-2.25□□□□□ -2.77
VPS13C-205ENST00000558088 PRUNE2Q8WUY3 3088 aa-2.26□□□□□ -2.77
VPS13C-205ENST00000558088 MMP24-AS1A0A0U1RRL7 71 aa-2.26□□□□□ -2.77
VPS13C-205ENST00000558088 HMGN1P05114 100 aa-2.26□□□□□ -2.77
VPS13C-205ENST00000558088 SARNPP82979 210 aaKnown RBP-2.26□□□□□ -2.77
VPS13C-205ENST00000558088 ABCA3Q99758 1704 aa-2.26□□□□□ -2.77
VPS13C-205ENST00000558088 MGAQ8IWI9 3026 aa-2.26□□□□□ -2.77
VPS13C-205ENST00000558088 PRDM15P57071 1507 aaPredicted RBP-2.27□□□□□ -2.77
VPS13C-205ENST00000558088 WIZO95785 1651 aa-2.27□□□□□ -2.77
VPS13C-205ENST00000558088 NALCNQ8IZF0 1738 aa-2.27□□□□□ -2.77
VPS13C-205ENST00000558088 LYNX1G3V0Z9 82 aa-2.27□□□□□ -2.77
VPS13C-205ENST00000558088 TIAM2Q8IVF5 1701 aa-2.28□□□□□ -2.77
VPS13C-205ENST00000558088 MYH4Q9Y623 1939 aa-2.28□□□□□ -2.77
VPS13C-205ENST00000558088 KRTAP8-1Q8IUC2 63 aa-2.28□□□□□ -2.77
VPS13C-205ENST00000558088 C20orf202A1L168 122 aa-2.29□□□□□ -2.78
VPS13C-205ENST00000558088 SMIM11AP58511 58 aa-2.29□□□□□ -2.78
VPS13C-205ENST00000558088 S100A10P60903 97 aa-2.29□□□□□ -2.78
VPS13C-205ENST00000558088 PLIN4Q96Q06 1357 aa-2.29□□□□□ -2.78
VPS13C-205ENST00000558088 DEPDC5O75140 1603 aa-2.29□□□□□ -2.78
VPS13C-205ENST00000558088 RGPD3A6NKT7 1758 aaPredicted RBP-2.29□□□□□ -2.78
VPS13C-205ENST00000558088 RGPD4Q7Z3J3 1758 aa-2.29□□□□□ -2.78
VPS13C-205ENST00000558088 ATP7BP35670 1465 aa-2.3□□□□□ -2.78
VPS13C-205ENST00000558088 HMGN2P05204 90 aaKnown RBP-2.3□□□□□ -2.78
VPS13C-205ENST00000558088 ZFHX4Q86UP3 3567 aa-2.31□□□□□ -2.78
VPS13C-205ENST00000558088 TEX14Q8IWB6 1497 aa-2.31□□□□□ -2.78
VPS13C-205ENST00000558088 PEA15Q15121 130 aa-2.31□□□□□ -2.78
VPS13C-205ENST00000558088 RGPD1P0DJD0 1748 aa-2.31□□□□□ -2.78
VPS13C-205ENST00000558088 LINC00032P0C843 101 aa-2.32□□□□□ -2.78
VPS13C-205ENST00000558088 IFI27P40305 119 aaPredicted RBP-2.33□□□□□ -2.78
VPS13C-205ENST00000558088 NWD1Q149M9 1564 aa-2.33□□□□□ -2.78
VPS13C-205ENST00000558088 BAZ1AQ9NRL2 1556 aaPredicted RBP-2.34□□□□□ -2.78
VPS13C-205ENST00000558088 CEP170BQ9Y4F5 1589 aaPredicted RBP-2.34□□□□□ -2.78
VPS13C-205ENST00000558088 NDUFB1O75438 58 aa-2.34□□□□□ -2.78
VPS13C-205ENST00000558088 NESP48681 1621 aa-2.35□□□□□ -2.78
VPS13C-205ENST00000558088 ANKRD36CQ5JPF3 1778 aa-2.35□□□□□ -2.79
VPS13C-205ENST00000558088 FYCO1Q9BQS8 1478 aa-2.35□□□□□ -2.79
VPS13C-205ENST00000558088 IGLV5-48A0A075B6I7 105 aa-2.36□□□□□ -2.79
VPS13C-205ENST00000558088 DEFB4AO15263 64 aa-2.36□□□□□ -2.79
VPS13C-205ENST00000558088 SUPT6HQ7KZ85 1726 aaKnown RBP-2.37□□□□□ -2.79
VPS13C-205ENST00000558088 EIF4G3O43432 1585 aaKnown RBP-2.37□□□□□ -2.79
VPS13C-205ENST00000558088 CLTCQ00610 1675 aaKnown RBP-2.37□□□□□ -2.79
VPS13C-205ENST00000558088 ZNF831Q5JPB2 1677 aa-2.37□□□□□ -2.79
VPS13C-205ENST00000558088 EFCAB10A6NFE3 127 aa-2.38□□□□□ -2.79
VPS13C-205ENST00000558088 WT1-ASQ06250 92 aa-2.38□□□□□ -2.79
VPS13C-205ENST00000558088 DPY30Q9C005 99 aa-2.38□□□□□ -2.79
VPS13C-205ENST00000558088 LCE6AA0A183 80 aa-2.39□□□□□ -2.79
VPS13C-205ENST00000558088 C2orf88Q9BSF0 95 aa-2.39□□□□□ -2.79
VPS13C-205ENST00000558088 LINC01546A6NGU7 62 aa-2.4□□□□□ -2.79
VPS13C-205ENST00000558088 POLR1AO95602 1720 aaPredicted RBP-2.41□□□□□ -2.8
VPS13C-205ENST00000558088 MYMXA0A1B0GTQ4 84 aa-2.41□□□□□ -2.8
VPS13C-205ENST00000558088 UMAD1C9J7I0 102 aa-2.41□□□□□ -2.8
VPS13C-205ENST00000558088 NDUFA4O00483 81 aa-2.41□□□□□ -2.8
VPS13C-205ENST00000558088 S100PP25815 95 aa-2.41□□□□□ -2.8
VPS13C-205ENST00000558088 ACBD7Q8N6N7 88 aa-2.41□□□□□ -2.8
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms