RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 PRO1854Q9UHT4 67 aa7.86□□□□□ -1.15
SHMT2-228ENST00000557302 IGLV5-48A0A075B6I7 105 aa7.85□□□□□ -1.15
SHMT2-228ENST00000557302 XP32Q5T750 250 aa7.85□□□□□ -1.15
SHMT2-228ENST00000557302 hADV29S1A0JD25 119 aa7.84□□□□□ -1.15
SHMT2-228ENST00000557302 PRR4Q16378 134 aa7.84□□□□□ -1.15
SHMT2-228ENST00000557302 LINC01547P58512 204 aaPredicted RBP7.83□□□□□ -1.16
SHMT2-228ENST00000557302 SPINK1P00995 79 aa7.82□□□□□ -1.16
SHMT2-228ENST00000557302 SNHG12Q9BXW3 62 aa7.82□□□□□ -1.16
SHMT2-228ENST00000557302 H0YGX0 51 aa7.81□□□□□ -1.16
SHMT2-228ENST00000557302 Q6ZQY7 126 aa7.81□□□□□ -1.16
SHMT2-228ENST00000557302 K7ERJ3 54 aa7.8□□□□□ -1.16
SHMT2-228ENST00000557302 SNCGO76070 127 aa7.8□□□□□ -1.16
SHMT2-228ENST00000557302 SMIM29Q86T20 159 aa7.8□□□□□ -1.16
SHMT2-228ENST00000557302 Q8N377 158 aa7.8□□□□□ -1.16
SHMT2-228ENST00000557302 RETNLBQ9BQ08 111 aa7.8□□□□□ -1.16
SHMT2-228ENST00000557302 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.79□□□□□ -1.16
SHMT2-228ENST00000557302 RPS29P62273 56 aaKnown RBP7.78□□□□□ -1.16
SHMT2-228ENST00000557302 COL5A1-AS1Q5SY13 56 aa7.78□□□□□ -1.16
SHMT2-228ENST00000557302 F8WEM9 126 aa7.76□□□□□ -1.17
SHMT2-228ENST00000557302 TRIAP1O43715 76 aa7.76□□□□□ -1.17
SHMT2-228ENST00000557302 PSMB2P49721 201 aa7.75□□□□□ -1.17
SHMT2-228ENST00000557302 PPDPFLQ8WWR9 84 aa7.75□□□□□ -1.17
SHMT2-228ENST00000557302 FAM218AQ96MZ4 157 aa7.75□□□□□ -1.17
SHMT2-228ENST00000557302 LPAP08519 4548 aa7.74□□□□□ -1.17
SHMT2-228ENST00000557302 A0A1B0GX51 115 aa7.73□□□□□ -1.17
SHMT2-228ENST00000557302 COX6CP09669 75 aa7.73□□□□□ -1.17
SHMT2-228ENST00000557302 OCIAD2Q56VL3 154 aa7.73□□□□□ -1.17
SHMT2-228ENST00000557302 HRCT1Q6UXD1 115 aa7.73□□□□□ -1.17
SHMT2-228ENST00000557302 IGLV7-46A0A075B6I9 117 aa7.72□□□□□ -1.17
SHMT2-228ENST00000557302 CD164Q04900 197 aa7.72□□□□□ -1.17
SHMT2-228ENST00000557302 BATFQ16520 125 aa7.72□□□□□ -1.17
SHMT2-228ENST00000557302 FP248Q71RG6 208 aaPredicted RBP7.71□□□□□ -1.18
SHMT2-228ENST00000557302 CLEC2BQ92478 149 aa7.71□□□□□ -1.18
SHMT2-228ENST00000557302 LIMD2Q9BT23 127 aa7.71□□□□□ -1.18
SHMT2-228ENST00000557302 GHRHP01286 108 aa7.69□□□□□ -1.18
SHMT2-228ENST00000557302 Q6JHZ5 121 aa7.69□□□□□ -1.18
SHMT2-228ENST00000557302 IGLV8-61A0A075B6I0 122 aa7.68□□□□□ -1.18
SHMT2-228ENST00000557302 A0A0G2JQZ4 141 aa7.68□□□□□ -1.18
SHMT2-228ENST00000557302 DNAL4O96015 105 aa7.68□□□□□ -1.18
SHMT2-228ENST00000557302 TAX1BP3O14907 124 aa7.67□□□□□ -1.18
SHMT2-228ENST00000557302 TPRXLQ17RH7 258 aa7.67□□□□□ -1.18
SHMT2-228ENST00000557302 SCGB1C2P0DMR2 95 aa7.66□□□□□ -1.18
SHMT2-228ENST00000557302 C9orf118A6NHY6 69 aa7.65□□□□□ -1.18
SHMT2-228ENST00000557302 FABP2P12104 132 aa7.65□□□□□ -1.18
SHMT2-228ENST00000557302 IGFL1Q6UW32 110 aa7.65□□□□□ -1.18
SHMT2-228ENST00000557302 H3BUT2 72 aa7.64□□□□□ -1.19
SHMT2-228ENST00000557302 NDUFV3P56181 108 aaKnown RBP7.64□□□□□ -1.19
SHMT2-228ENST00000557302 ORMDL1Q9P0S3 153 aa7.64□□□□□ -1.19
SHMT2-228ENST00000557302 H3BQ85 93 aa7.63□□□□□ -1.19
SHMT2-228ENST00000557302 Q5XG85 94 aa7.63□□□□□ -1.19
SHMT2-228ENST00000557302 CDIP1Q9H305 208 aa7.63□□□□□ -1.19
SHMT2-228ENST00000557302 TRACP01848 142 aa7.62□□□□□ -1.19
SHMT2-228ENST00000557302 LST1O00453 97 aa7.61□□□□□ -1.19
SHMT2-228ENST00000557302 LYRM7Q5U5X0 104 aa7.61□□□□□ -1.19
SHMT2-228ENST00000557302 H3BMG7 143 aa7.6□□□□□ -1.19
SHMT2-228ENST00000557302 TCL1BO95988 128 aa7.6□□□□□ -1.19
SHMT2-228ENST00000557302 KRTAP13-3Q3SY46 172 aa7.6□□□□□ -1.19
SHMT2-228ENST00000557302 TRBV7-7A0A0K0K1E9 115 aa7.59□□□□□ -1.19
SHMT2-228ENST00000557302 TMEM256-PLSCR3K7ERE1 68 aa7.59□□□□□ -1.19
SHMT2-228ENST00000557302 NAA38Q9BRA0 125 aaKnown RBP7.59□□□□□ -1.19
SHMT2-228ENST00000557302 KRTAP4-8Q9BYQ9 185 aa7.59□□□□□ -1.19
SHMT2-228ENST00000557302 A0A1B0GV90 55 aa7.58□□□□□ -1.2
SHMT2-228ENST00000557302 A0A1W2PPM0 123 aa7.58□□□□□ -1.2
SHMT2-228ENST00000557302 ATXN8Q156A1 80 aa7.56□□□□□ -1.2
SHMT2-228ENST00000557302 C1orf195Q5TG92 126 aa7.56□□□□□ -1.2
SHMT2-228ENST00000557302 TRBV20-1A0A075B6N2 111 aa7.55□□□□□ -1.2
SHMT2-228ENST00000557302 Q6Q795 121 aa7.55□□□□□ -1.2
SHMT2-228ENST00000557302 GTF2H5Q6ZYL4 71 aa7.55□□□□□ -1.2
SHMT2-228ENST00000557302 TEN1Q86WV5 123 aa7.55□□□□□ -1.2
SHMT2-228ENST00000557302 A0A1B0GV72 72 aa7.54□□□□□ -1.2
SHMT2-228ENST00000557302 UBE2V1Q13404 147 aa7.54□□□□□ -1.2
SHMT2-228ENST00000557302 ASB16-AS1Q495Z4 193 aa7.54□□□□□ -1.2
SHMT2-228ENST00000557302 MUC2Q02817 5179 aa7.53□□□□□ -1.2
SHMT2-228ENST00000557302 ANKRD29Q8N6D5 301 aa7.53□□□□□ -1.2
SHMT2-228ENST00000557302 K7EP34 96 aa7.52□□□□□ -1.21
SHMT2-228ENST00000557302 SS18L2Q9UHA2 77 aa7.52□□□□□ -1.21
SHMT2-228ENST00000557302 BAALC-AS2P0C853 105 aa7.51□□□□□ -1.21
SHMT2-228ENST00000557302 SPCS1Q9Y6A9 102 aa7.51□□□□□ -1.21
SHMT2-228ENST00000557302 A0A087WSZ3 146 aa7.49□□□□□ -1.21
SHMT2-228ENST00000557302 A0A1W2PNM2 257 aa7.49□□□□□ -1.21
SHMT2-228ENST00000557302 C9orf92A6NGG3 77 aa7.48□□□□□ -1.21
SHMT2-228ENST00000557302 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.47□□□□□ -1.21
SHMT2-228ENST00000557302 RBM3P98179 157 aaKnown RBP7.47□□□□□ -1.21
SHMT2-228ENST00000557302 KRTAP9-2Q9BYQ4 174 aa7.47□□□□□ -1.21
SHMT2-228ENST00000557302 MUC17Q685J3 4493 aa7.46□□□□□ -1.21
SHMT2-228ENST00000557302 TRBV7-4A0A0J9YYF1 115 aa7.46□□□□□ -1.22
SHMT2-228ENST00000557302 CCKP06307 115 aa7.46□□□□□ -1.22
SHMT2-228ENST00000557302 DSCR8Q96T75 97 aa7.45□□□□□ -1.22
SHMT2-228ENST00000557302 C9JAW5 83 aa7.44□□□□□ -1.22
SHMT2-228ENST00000557302 F8W1H4 67 aa7.44□□□□□ -1.22
SHMT2-228ENST00000557302 KRTAP9-6A0A140TA67 174 aa7.43□□□□□ -1.22
SHMT2-228ENST00000557302 SEC61BP60468 96 aaKnown RBP7.43□□□□□ -1.22
SHMT2-228ENST00000557302 VPS25Q9BRG1 176 aa7.43□□□□□ -1.22
SHMT2-228ENST00000557302 JMJD7-PLA2G4BH0Y9G9 81 aa7.42□□□□□ -1.22
SHMT2-228ENST00000557302 Q96NJ1 140 aa7.39□□□□□ -1.23
SHMT2-228ENST00000557302 PRO0461Q9UI25 63 aa7.39□□□□□ -1.23
SHMT2-228ENST00000557302 H3BT86 120 aa7.37□□□□□ -1.23
SHMT2-228ENST00000557302 LOC110117498A0A087WWA1 95 aa7.36□□□□□ -1.23
SHMT2-228ENST00000557302 PDE6GP18545 87 aa7.36□□□□□ -1.23
SHMT2-228ENST00000557302 C21orf62-AS1Q17RA5 79 aa7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 117 ms