RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 CCDC168Q8NDH2 2452 aa8.67□□□□□ -1.02
SHMT2-226ENST00000556825 DEFB130BP0DP73 79 aa8.66□□□□□ -1.02
SHMT2-226ENST00000556825 DEFB130AP0DP74 79 aa8.66□□□□□ -1.02
SHMT2-226ENST00000556825 ROMO1P60602 79 aa8.66□□□□□ -1.02
SHMT2-226ENST00000556825 PRO0255Q9UI72 69 aa8.65□□□□□ -1.02
SHMT2-226ENST00000556825 ZNF469Q96JG9 3925 aaPredicted RBP8.65□□□□□ -1.02
SHMT2-226ENST00000556825 DEFB131BA0A096LNP1 70 aa8.65□□□□□ -1.03
SHMT2-226ENST00000556825 CAMK2N2Q96S95 79 aa8.64□□□□□ -1.03
SHMT2-226ENST00000556825 SONP18583 2426 aaKnown RBP8.64□□□□□ -1.03
SHMT2-226ENST00000556825 FLNAP21333 2647 aaKnown RBP8.63□□□□□ -1.03
SHMT2-226ENST00000556825 PDZD2O15018 2839 aa8.63□□□□□ -1.03
SHMT2-226ENST00000556825 A0A087WSZ3 146 aa8.62□□□□□ -1.03
SHMT2-226ENST00000556825 A8MWP4 228 aa8.62□□□□□ -1.03
SHMT2-226ENST00000556825 IGFL1Q6UW32 110 aa8.62□□□□□ -1.03
SHMT2-226ENST00000556825 KRTAP4-16G5E9R7 235 aaPredicted RBP8.61□□□□□ -1.03
SHMT2-226ENST00000556825 PRR34Q9NV39 138 aa8.61□□□□□ -1.03
SHMT2-226ENST00000556825 ITPR2Q14571 2701 aa8.61□□□□□ -1.03
SHMT2-226ENST00000556825 NOTCH2Q04721 2471 aa8.61□□□□□ -1.03
SHMT2-226ENST00000556825 REG3GQ6UW15 175 aa8.61□□□□□ -1.03
SHMT2-226ENST00000556825 A0A0A0MQY5 61 aa8.6□□□□□ -1.03
SHMT2-226ENST00000556825 KRTAP1-1Q07627 177 aa8.6□□□□□ -1.03
SHMT2-226ENST00000556825 A0A0G2JQZ4 141 aa8.59□□□□□ -1.03
SHMT2-226ENST00000556825 A0A1W2PNN7 141 aa8.59□□□□□ -1.03
SHMT2-226ENST00000556825 MIR22HGQ0VDD5 57 aa8.59□□□□□ -1.03
SHMT2-226ENST00000556825 C4orf3Q8WVX3 66 aa8.59□□□□□ -1.03
SHMT2-226ENST00000556825 AKAP9Q99996 3911 aa8.59□□□□□ -1.03
SHMT2-226ENST00000556825 NOTCH3Q9UM47 2321 aa8.59□□□□□ -1.03
SHMT2-226ENST00000556825 ACANP16112 2415 aa8.59□□□□□ -1.03
SHMT2-226ENST00000556825 IGKV2-24A0A0C4DH68 120 aa8.58□□□□□ -1.04
SHMT2-226ENST00000556825 TP53AIP1Q9HCN2 124 aa8.58□□□□□ -1.04
SHMT2-226ENST00000556825 CMC4P56277 68 aaPredicted RBP8.57□□□□□ -1.04
SHMT2-226ENST00000556825 MMP24-AS1A0A0U1RRL7 71 aa8.56□□□□□ -1.04
SHMT2-226ENST00000556825 SPRR1AP35321 89 aa8.56□□□□□ -1.04
SHMT2-226ENST00000556825 CUBNO60494 3623 aa8.55□□□□□ -1.04
SHMT2-226ENST00000556825 ZNF861PO60384 105 aa8.54□□□□□ -1.04
SHMT2-226ENST00000556825 A0A1B0GU69 56 aa8.54□□□□□ -1.04
SHMT2-226ENST00000556825 IGLV8-61A0A075B6I0 122 aa8.53□□□□□ -1.04
SHMT2-226ENST00000556825 C19orf73Q9NVV2 129 aa8.53□□□□□ -1.04
SHMT2-226ENST00000556825 UQCR11O14957 56 aa8.53□□□□□ -1.04
SHMT2-226ENST00000556825 LINC00472Q9H8W2 130 aa8.53□□□□□ -1.04
SHMT2-226ENST00000556825 NF1P21359 2839 aa8.51□□□□□ -1.05
SHMT2-226ENST00000556825 RPL37AP8A6NKH3 93 aa8.5□□□□□ -1.05
SHMT2-226ENST00000556825 MTORP42345 2549 aa8.49□□□□□ -1.05
SHMT2-226ENST00000556825 LELP1Q5T871 98 aa8.49□□□□□ -1.05
SHMT2-226ENST00000556825 SMR3AQ99954 134 aa8.49□□□□□ -1.05
SHMT2-226ENST00000556825 KRTAP25-1Q3LHN0 102 aa8.49□□□□□ -1.05
SHMT2-226ENST00000556825 ANK3Q12955 4377 aaKnown RBP8.48□□□□□ -1.05
SHMT2-226ENST00000556825 HIVEP2P31629 2446 aa8.48□□□□□ -1.05
SHMT2-226ENST00000556825 ACYP2P14621 99 aa8.47□□□□□ -1.05
SHMT2-226ENST00000556825 PLA2G2DQ9UNK4 145 aa8.47□□□□□ -1.05
SHMT2-226ENST00000556825 C15orf56Q8N910 161 aa8.46□□□□□ -1.06
SHMT2-226ENST00000556825 SETD2Q9BYW2 2564 aaPredicted RBP8.44□□□□□ -1.06
SHMT2-226ENST00000556825 P0C880 135 aa8.44□□□□□ -1.06
SHMT2-226ENST00000556825 NOTCH2NLQ7Z3S9 236 aa8.44□□□□□ -1.06
SHMT2-226ENST00000556825 KRTAP26-1Q6PEX3 210 aa8.43□□□□□ -1.06
SHMT2-226ENST00000556825 NIPBLQ6KC79 2804 aaeCLIP8.42□□□□□ -1.06
SHMT2-226ENST00000556825 FAM168BA1KXE4 195 aa8.41□□□□□ -1.06
SHMT2-226ENST00000556825 X6R8D5 127 aa8.39□□□□□ -1.07
SHMT2-226ENST00000556825 F8P00451 2351 aa8.39□□□□□ -1.07
SHMT2-226ENST00000556825 JMJD1CQ15652 2540 aa8.39□□□□□ -1.07
SHMT2-226ENST00000556825 INAFM1C9JVW0 142 aa8.38□□□□□ -1.07
SHMT2-226ENST00000556825 ALMS1Q8TCU4 4167 aa8.38□□□□□ -1.07
SHMT2-226ENST00000556825 OTOGQ6ZRI0 2925 aa8.38□□□□□ -1.07
SHMT2-226ENST00000556825 DMAC1Q96GE9 116 aa8.36□□□□□ -1.07
SHMT2-226ENST00000556825 TLX1NBP0CAT3 122 aa8.35□□□□□ -1.07
SHMT2-226ENST00000556825 KRTAP10-3P60369 221 aa8.35□□□□□ -1.07
SHMT2-226ENST00000556825 C8orf17Q9NRJ1 99 aa8.35□□□□□ -1.07
SHMT2-226ENST00000556825 FBN3Q75N90 2809 aa8.33□□□□□ -1.08
SHMT2-226ENST00000556825 IGLV5-52A0A0A0MRZ9 124 aa8.33□□□□□ -1.08
SHMT2-226ENST00000556825 FN1P02751 2386 aaKnown RBP8.32□□□□□ -1.08
SHMT2-226ENST00000556825 KRTAP7-1Q8IUC3 87 aa8.32□□□□□ -1.08
SHMT2-226ENST00000556825 LINC00483Q53H64 154 aa8.3□□□□□ -1.08
SHMT2-226ENST00000556825 NSD1Q96L73 2696 aaPredicted RBP8.3□□□□□ -1.08
SHMT2-226ENST00000556825 A8MUU9 505 aa8.3□□□□□ -1.08
SHMT2-226ENST00000556825 HIVEP1P15822 2718 aa8.29□□□□□ -1.08
SHMT2-226ENST00000556825 MRPL34Q9BQ48 92 aaKnown RBP8.27□□□□□ -1.08
SHMT2-226ENST00000556825 DEFB4AO15263 64 aa8.26□□□□□ -1.09
SHMT2-226ENST00000556825 IGLV7-43P04211 117 aa8.26□□□□□ -1.09
SHMT2-226ENST00000556825 Q96NJ1 140 aa8.25□□□□□ -1.09
SHMT2-226ENST00000556825 K7EIL1 84 aa8.23□□□□□ -1.09
SHMT2-226ENST00000556825 HTN3P15516 51 aa8.23□□□□□ -1.09
SHMT2-226ENST00000556825 SPRR1BP22528 89 aa8.23□□□□□ -1.09
SHMT2-226ENST00000556825 PRLHP81277 87 aa8.22□□□□□ -1.09
SHMT2-226ENST00000556825 A0A1B0GVX0 72 aa8.21□□□□□ -1.09
SHMT2-226ENST00000556825 KRTAP16-1A8MUX0 517 aa8.21□□□□□ -1.1
SHMT2-226ENST00000556825 KRTAP13-3Q3SY46 172 aa8.21□□□□□ -1.1
SHMT2-226ENST00000556825 LINC00304Q8N9R0 145 aa8.21□□□□□ -1.1
SHMT2-226ENST00000556825 DNAH10OSP0CZ25 163 aa8.19□□□□□ -1.1
SHMT2-226ENST00000556825 Q5W150 140 aa8.19□□□□□ -1.1
SHMT2-226ENST00000556825 VWFP04275 2813 aa8.19□□□□□ -1.1
SHMT2-226ENST00000556825 ATRQ13535 2644 aa8.17□□□□□ -1.1
SHMT2-226ENST00000556825 NBEAL2Q6ZNJ1 2754 aa8.16□□□□□ -1.1
SHMT2-226ENST00000556825 TENM2Q9NT68 2774 aa8.16□□□□□ -1.1
SHMT2-226ENST00000556825 TENM1Q9UKZ4 2725 aa8.16□□□□□ -1.1
SHMT2-226ENST00000556825 SPART-AS1P0CW21 52 aa8.14□□□□□ -1.11
SHMT2-226ENST00000556825 C20orf166-AS1Q96NR2 134 aa8.13□□□□□ -1.11
SHMT2-226ENST00000556825 CDK2AP2O75956 126 aa8.12□□□□□ -1.11
SHMT2-226ENST00000556825 DEFB135Q30KP9 77 aa8.12□□□□□ -1.11
SHMT2-226ENST00000556825 A0A096LNI7 61 aa8.11□□□□□ -1.11
SHMT2-226ENST00000556825 CASC10Q5T4H9 136 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 103.1 ms