RNA–Protein interactions for RNA: ENST00000544040.5

CHD4-210, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CHD4, Length 6,514 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-210ENST00000544040 USP24Q9UPU5 2620 aa9.21□□□□□ -0.93
CHD4-210ENST00000544040 KRTAP1-5Q9BYS1 174 aa9.18□□□□□ -0.94
CHD4-210ENST00000544040 SEC61BP60468 96 aaKnown RBP9.16□□□□□ -0.94
CHD4-210ENST00000544040 Q5VSD8 79 aa9.16□□□□□ -0.94
CHD4-210ENST00000544040 Q6ZR54 194 aa9.14□□□□□ -0.95
CHD4-210ENST00000544040 MGAM2Q2M2H8 2515 aa9.11□□□□□ -0.95
CHD4-210ENST00000544040 KRTAP10-1P60331 282 aa9.11□□□□□ -0.95
CHD4-210ENST00000544040 PLAC4Q8WY50 150 aa9.1□□□□□ -0.95
CHD4-210ENST00000544040 KRTAP10-2P60368 255 aa9.09□□□□□ -0.95
CHD4-210ENST00000544040 KRTAP16-1A8MUX0 517 aa9.08□□□□□ -0.96
CHD4-210ENST00000544040 A8MU10 97 aa9.03□□□□□ -0.96
CHD4-210ENST00000544040 PANO1I0J062 215 aa9.02□□□□□ -0.96
CHD4-210ENST00000544040 A0A087X002 238 aa9.01□□□□□ -0.97
CHD4-210ENST00000544040 NOTCH2NLQ7Z3S9 236 aa9.01□□□□□ -0.97
CHD4-210ENST00000544040 KRTAP29-1A8MX34 341 aaPredicted RBP9□□□□□ -0.97
CHD4-210ENST00000544040 C20orf166-AS1Q96NR2 134 aa8.99□□□□□ -0.97
CHD4-210ENST00000544040 PRRC2CQ9Y520 2896 aaKnown RBP8.99□□□□□ -0.97
CHD4-210ENST00000544040 DNAH12Q6ZR08 3092 aa8.98□□□□□ -0.97
CHD4-210ENST00000544040 KRTAP25-1Q3LHN0 102 aa8.98□□□□□ -0.97
CHD4-210ENST00000544040 ASB16-AS1Q495Z4 193 aa8.98□□□□□ -0.97
CHD4-210ENST00000544040 HECTD1Q9ULT8 2610 aa8.97□□□□□ -0.97
CHD4-210ENST00000544040 KRTAP4-16G5E9R7 235 aaPredicted RBP8.94□□□□□ -0.98
CHD4-210ENST00000544040 A6NN06 94 aa8.93□□□□□ -0.98
CHD4-210ENST00000544040 NDUFAF8A1L188 74 aa8.9□□□□□ -0.98
CHD4-210ENST00000544040 FLG2Q5D862 2391 aaPredicted RBP8.89□□□□□ -0.99
CHD4-210ENST00000544040 EPG5Q9HCE0 2579 aa8.85□□□□□ -0.99
CHD4-210ENST00000544040 CEP350Q5VT06 3117 aa8.85□□□□□ -0.99
CHD4-210ENST00000544040 A8MUU9 505 aa8.84□□□□□ -0.99
CHD4-210ENST00000544040 LCE6AA0A183 80 aa8.84□□□□□ -0.99
CHD4-210ENST00000544040 FLNAP21333 2647 aaKnown RBP8.84□□□□□ -0.99
CHD4-210ENST00000544040 KRTAP11-1Q8IUC1 163 aa8.81□□□□□ -1
CHD4-210ENST00000544040 C5orf42Q9H799 3197 aa8.8□□□□□ -1
CHD4-210ENST00000544040 ATRQ13535 2644 aa8.8□□□□□ -1
CHD4-210ENST00000544040 ITPR3Q14573 2671 aa8.78□□□□□ -1
CHD4-210ENST00000544040 FLNBO75369 2602 aaKnown RBP8.77□□□□□ -1.01
CHD4-210ENST00000544040 UTRNP46939 3433 aa8.76□□□□□ -1.01
CHD4-210ENST00000544040 C10orf95Q9H7T3 257 aa8.73□□□□□ -1.01
CHD4-210ENST00000544040 DMBT1Q9UGM3 2413 aaPredicted RBP8.69□□□□□ -1.02
CHD4-210ENST00000544040 MAST4O15021 2626 aa8.66□□□□□ -1.02
CHD4-210ENST00000544040 KRTAP7-1Q8IUC3 87 aa8.64□□□□□ -1.03
CHD4-210ENST00000544040 NBEAL1Q6ZS30 2694 aa8.63□□□□□ -1.03
CHD4-210ENST00000544040 CFAP54Q96N23 3096 aa8.62□□□□□ -1.03
CHD4-210ENST00000544040 KRTAP13-2Q52LG2 175 aa8.61□□□□□ -1.03
CHD4-210ENST00000544040 AKAP13Q12802 2813 aa8.61□□□□□ -1.03
CHD4-210ENST00000544040 TNP1P09430 55 aa8.59□□□□□ -1.03
CHD4-210ENST00000544040 CHD6Q8TD26 2715 aa8.58□□□□□ -1.04
CHD4-210ENST00000544040 RPS29P62273 56 aaKnown RBP8.56□□□□□ -1.04
CHD4-210ENST00000544040 PCNTO95613 3336 aa8.55□□□□□ -1.04
CHD4-210ENST00000544040 STAB1Q9NY15 2570 aa8.55□□□□□ -1.04
CHD4-210ENST00000544040 A0A0C4DFX4 3053 aa8.54□□□□□ -1.04
CHD4-210ENST00000544040 CFAP46Q8IYW2 2715 aa8.53□□□□□ -1.04
CHD4-210ENST00000544040 Q6ZRN7 208 aaPredicted RBP8.52□□□□□ -1.05
CHD4-210ENST00000544040 HELZ2Q9BYK8 2649 aaKnown RBP8.49□□□□□ -1.05
CHD4-210ENST00000544040 KRTAP13-1Q8IUC0 172 aa8.46□□□□□ -1.05
CHD4-210ENST00000544040 TEX15Q9BXT5 2789 aa8.43□□□□□ -1.06
CHD4-210ENST00000544040 CHD7Q9P2D1 2997 aa8.42□□□□□ -1.06
CHD4-210ENST00000544040 GCN1Q92616 2671 aaKnown RBP8.42□□□□□ -1.06
CHD4-210ENST00000544040 STAB2Q8WWQ8 2551 aa8.4□□□□□ -1.06
CHD4-210ENST00000544040 UNC79Q9P2D8 2635 aa8.4□□□□□ -1.06
CHD4-210ENST00000544040 CENPEQ02224 2701 aa8.39□□□□□ -1.07
CHD4-210ENST00000544040 KRTAP10-8P60410 259 aa8.36□□□□□ -1.07
CHD4-210ENST00000544040 A0A1B0GVY2 172 aa8.36□□□□□ -1.07
CHD4-210ENST00000544040 NBEAL2Q6ZNJ1 2754 aa8.34□□□□□ -1.07
CHD4-210ENST00000544040 FREM2Q5SZK8 3169 aa8.33□□□□□ -1.08
CHD4-210ENST00000544040 MGAQ8IWI9 3026 aa8.32□□□□□ -1.08
CHD4-210ENST00000544040 MKI67P46013 3256 aaKnown RBP8.3□□□□□ -1.08
CHD4-210ENST00000544040 NOTCH1P46531 2555 aa8.29□□□□□ -1.08
CHD4-210ENST00000544040 LAMA2P24043 3122 aaKnown RBP8.29□□□□□ -1.08
CHD4-210ENST00000544040 TRIOO75962 3097 aa8.27□□□□□ -1.09
CHD4-210ENST00000544040 H0YAA0 97 aa8.26□□□□□ -1.09
CHD4-210ENST00000544040 PP632Q6XCG6 107 aa8.25□□□□□ -1.09
CHD4-210ENST00000544040 TEP1Q99973 2627 aaKnown RBP8.25□□□□□ -1.09
CHD4-210ENST00000544040 COL6A5A8TX70 2615 aa8.22□□□□□ -1.09
CHD4-210ENST00000544040 P0C880 135 aa8.21□□□□□ -1.09
CHD4-210ENST00000544040 XP32Q5T750 250 aa8.16□□□□□ -1.1
CHD4-210ENST00000544040 WDFY4Q6ZS81 3184 aa8.14□□□□□ -1.11
CHD4-210ENST00000544040 FRYQ5TBA9 3013 aa8.13□□□□□ -1.11
CHD4-210ENST00000544040 CELSR3Q9NYQ7 3312 aa8.11□□□□□ -1.11
CHD4-210ENST00000544040 CHD9Q3L8U1 2897 aa8.11□□□□□ -1.11
CHD4-210ENST00000544040 XIRP2A4UGR9 3374 aa8.09□□□□□ -1.11
CHD4-210ENST00000544040 LAMA3Q16787 3333 aa8.09□□□□□ -1.11
CHD4-210ENST00000544040 SETXQ7Z333 2677 aaKnown RBP8.06□□□□□ -1.12
CHD4-210ENST00000544040 UNC80Q8N2C7 3258 aa8.05□□□□□ -1.12
CHD4-210ENST00000544040 KRTAP1-4P0C5Y4 121 aa8.05□□□□□ -1.12
CHD4-210ENST00000544040 BAHCC1Q9P281 2608 aa8.04□□□□□ -1.12
CHD4-210ENST00000544040 RANBP2P49792 3224 aaKnown RBP8.04□□□□□ -1.12
CHD4-210ENST00000544040 BRCA2P51587 3418 aa8.03□□□□□ -1.12
CHD4-210ENST00000544040 KRTAP10-10P60014 251 aa8.03□□□□□ -1.12
CHD4-210ENST00000544040 HTTP42858 3142 aa8.01□□□□□ -1.13
CHD4-210ENST00000544040 KALRNO60229 2985 aa8□□□□□ -1.13
CHD4-210ENST00000544040 NSD1Q96L73 2696 aaPredicted RBP7.99□□□□□ -1.13
CHD4-210ENST00000544040 PRUNE2Q8WUY3 3088 aa7.99□□□□□ -1.13
CHD4-210ENST00000544040 ZNF292O60281 2723 aa7.97□□□□□ -1.13
CHD4-210ENST00000544040 MAP1AP78559 2803 aaPredicted RBP7.97□□□□□ -1.13
CHD4-210ENST00000544040 VPS13AQ96RL7 3174 aa7.96□□□□□ -1.13
CHD4-210ENST00000544040 APCP25054 2843 aa7.95□□□□□ -1.14
CHD4-210ENST00000544040 UBR5O95071 2799 aaPredicted RBP7.94□□□□□ -1.14
CHD4-210ENST00000544040 PRO2289Q9P1D8 64 aa7.89□□□□□ -1.15
CHD4-210ENST00000544040 ITPR2Q14571 2701 aa7.89□□□□□ -1.15
CHD4-210ENST00000544040 ASH1LQ9NR48 2969 aaKnown RBP7.87□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms