RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 TEX49A0A1B0GTD5 131 aa10.12□□□□□ -0.79
LIG1-204ENST00000542460 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP10.12□□□□□ -0.79
LIG1-204ENST00000542460 H3BMG7 143 aa10.12□□□□□ -0.79
LIG1-204ENST00000542460 KRTAP13-2Q52LG2 175 aa10.12□□□□□ -0.79
LIG1-204ENST00000542460 CLEC2BQ92478 149 aa10.12□□□□□ -0.79
LIG1-204ENST00000542460 LINC01547P58512 204 aaPredicted RBP10.11□□□□□ -0.79
LIG1-204ENST00000542460 TYMSOSQ8TAI1 123 aa10.1□□□□□ -0.79
LIG1-204ENST00000542460 TRBV20-1A0A075B6N2 111 aa10.09□□□□□ -0.79
LIG1-204ENST00000542460 K7ERU9 68 aa10.08□□□□□ -0.8
LIG1-204ENST00000542460 C3orf22Q8N5N4 141 aa10.08□□□□□ -0.8
LIG1-204ENST00000542460 F8W1H4 67 aa10.07□□□□□ -0.8
LIG1-204ENST00000542460 TCL1BO95988 128 aa10.07□□□□□ -0.8
LIG1-204ENST00000542460 OCIAD2Q56VL3 154 aa10.07□□□□□ -0.8
LIG1-204ENST00000542460 Q8N377 158 aa10.07□□□□□ -0.8
LIG1-204ENST00000542460 LAMTOR3Q9UHA4 124 aa10.07□□□□□ -0.8
LIG1-204ENST00000542460 IGLV9-49A0A0B4J1Y8 123 aa10.07□□□□□ -0.8
LIG1-204ENST00000542460 TNXBP22105 4242 aa10.06□□□□□ -0.8
LIG1-204ENST00000542460 MTURNQ8N3F0 131 aa10.06□□□□□ -0.8
LIG1-204ENST00000542460 PPDPFLQ8WWR9 84 aa10.06□□□□□ -0.8
LIG1-204ENST00000542460 LST1O00453 97 aa10.05□□□□□ -0.8
LIG1-204ENST00000542460 DNAL4O96015 105 aa10.05□□□□□ -0.8
LIG1-204ENST00000542460 GHRHP01286 108 aa10.05□□□□□ -0.8
LIG1-204ENST00000542460 SMIM29Q86T20 159 aa10.05□□□□□ -0.8
LIG1-204ENST00000542460 ATXN8Q156A1 80 aa10.04□□□□□ -0.8
LIG1-204ENST00000542460 TRACP01848 142 aa10.03□□□□□ -0.8
LIG1-204ENST00000542460 PRO0461Q9UI25 63 aa10.03□□□□□ -0.8
LIG1-204ENST00000542460 MOBPQ13875 183 aa10.02□□□□□ -0.8
LIG1-204ENST00000542460 SSBP3-AS1Q7Z2R9 100 aa10.02□□□□□ -0.8
LIG1-204ENST00000542460 C9orf153Q5TBE3 101 aa10.02□□□□□ -0.81
LIG1-204ENST00000542460 Q8NBF4 154 aa10.01□□□□□ -0.81
LIG1-204ENST00000542460 ORMDL1Q9P0S3 153 aa10.01□□□□□ -0.81
LIG1-204ENST00000542460 HMCN2Q8NDA2 5059 aa10□□□□□ -0.81
LIG1-204ENST00000542460 H3BQ85 93 aa9.99□□□□□ -0.81
LIG1-204ENST00000542460 F8WEM9 126 aa9.98□□□□□ -0.81
LIG1-204ENST00000542460 J3QR89 54 aa9.98□□□□□ -0.81
LIG1-204ENST00000542460 LINC00304Q8N9R0 145 aa9.98□□□□□ -0.81
LIG1-204ENST00000542460 C9JAW5 83 aa9.97□□□□□ -0.81
LIG1-204ENST00000542460 ETDBQ3ZM63 59 aa9.97□□□□□ -0.81
LIG1-204ENST00000542460 TMEM256-PLSCR3K7ERE1 68 aa9.96□□□□□ -0.82
LIG1-204ENST00000542460 SMCPP49901 116 aaPredicted RBP9.96□□□□□ -0.82
LIG1-204ENST00000542460 C4orf48Q5BLP8 95 aa9.95□□□□□ -0.82
LIG1-204ENST00000542460 SPAG11AQ6PDA7 123 aa9.95□□□□□ -0.82
LIG1-204ENST00000542460 NDUFV3P56181 108 aaKnown RBP9.94□□□□□ -0.82
LIG1-204ENST00000542460 IGLV8-61A0A075B6I0 122 aa9.92□□□□□ -0.82
LIG1-204ENST00000542460 VPS25Q9BRG1 176 aa9.92□□□□□ -0.82
LIG1-204ENST00000542460 BAALC-AS2P0C853 105 aa9.91□□□□□ -0.82
LIG1-204ENST00000542460 ANKRD29Q8N6D5 301 aa9.91□□□□□ -0.82
LIG1-204ENST00000542460 Q6JHZ5 121 aa9.9□□□□□ -0.82
LIG1-204ENST00000542460 TEN1Q86WV5 123 aa9.9□□□□□ -0.82
LIG1-204ENST00000542460 SPINK1P00995 79 aa9.89□□□□□ -0.83
LIG1-204ENST00000542460 H3BT86 120 aa9.87□□□□□ -0.83
LIG1-204ENST00000542460 CD164Q04900 197 aa9.87□□□□□ -0.83
LIG1-204ENST00000542460 A0A0G2JQZ4 141 aa9.86□□□□□ -0.83
LIG1-204ENST00000542460 IGFL1Q6UW32 110 aa9.86□□□□□ -0.83
LIG1-204ENST00000542460 RPS29P62273 56 aaKnown RBP9.85□□□□□ -0.83
LIG1-204ENST00000542460 HRCT1Q6UXD1 115 aa9.84□□□□□ -0.83
LIG1-204ENST00000542460 UBR4Q5T4S7 5183 aa9.83□□□□□ -0.84
LIG1-204ENST00000542460 A0A1B0GV72 72 aa9.8□□□□□ -0.84
LIG1-204ENST00000542460 RBM3P98179 157 aaKnown RBP9.79□□□□□ -0.84
LIG1-204ENST00000542460 LIMD2Q9BT23 127 aa9.78□□□□□ -0.84
LIG1-204ENST00000542460 JMJD7-PLA2G4BH0Y9G9 81 aa9.77□□□□□ -0.84
LIG1-204ENST00000542460 Q6Q795 121 aa9.77□□□□□ -0.85
LIG1-204ENST00000542460 DSCR8Q96T75 97 aa9.76□□□□□ -0.85
LIG1-204ENST00000542460 TRBV7-7A0A0K0K1E9 115 aa9.75□□□□□ -0.85
LIG1-204ENST00000542460 Q5XG85 94 aa9.75□□□□□ -0.85
LIG1-204ENST00000542460 TRBV7-4A0A0J9YYF1 115 aa9.74□□□□□ -0.85
LIG1-204ENST00000542460 RETNLBQ9BQ08 111 aa9.74□□□□□ -0.85
LIG1-204ENST00000542460 PCP4P48539 62 aa9.72□□□□□ -0.85
LIG1-204ENST00000542460 A0A1W2PNM2 257 aa9.72□□□□□ -0.85
LIG1-204ENST00000542460 OBSCN-AS1Q96MR7 158 aa9.72□□□□□ -0.85
LIG1-204ENST00000542460 CCKP06307 115 aa9.71□□□□□ -0.86
LIG1-204ENST00000542460 PRR4Q16378 134 aa9.71□□□□□ -0.86
LIG1-204ENST00000542460 LRP2P98164 4655 aa9.69□□□□□ -0.86
LIG1-204ENST00000542460 SCGB1A1P11684 91 aa9.69□□□□□ -0.86
LIG1-204ENST00000542460 PDE6GP18545 87 aa9.68□□□□□ -0.86
LIG1-204ENST00000542460 SIGMAR1Q99720 223 aa9.68□□□□□ -0.86
LIG1-204ENST00000542460 LOC110117498A0A087WWA1 95 aa9.67□□□□□ -0.86
LIG1-204ENST00000542460 FP248Q71RG6 208 aaPredicted RBP9.67□□□□□ -0.86
LIG1-204ENST00000542460 C14orf132Q9NPU4 83 aa9.67□□□□□ -0.86
LIG1-204ENST00000542460 SS18L2Q9UHA2 77 aa9.67□□□□□ -0.86
LIG1-204ENST00000542460 A0A087WSZ3 146 aa9.66□□□□□ -0.86
LIG1-204ENST00000542460 ASB16-AS1Q495Z4 193 aa9.66□□□□□ -0.86
LIG1-204ENST00000542460 Q6ZQT0 140 aa9.66□□□□□ -0.86
LIG1-204ENST00000542460 CDIP1Q9H305 208 aa9.66□□□□□ -0.86
LIG1-204ENST00000542460 IGLV7-46A0A075B6I9 117 aa9.63□□□□□ -0.87
LIG1-204ENST00000542460 C21orf62-AS1Q17RA5 79 aa9.63□□□□□ -0.87
LIG1-204ENST00000542460 C1orf195Q5TG92 126 aa9.63□□□□□ -0.87
LIG1-204ENST00000542460 FAM240AA0A1B0GVK7 77 aa9.61□□□□□ -0.87
LIG1-204ENST00000542460 A0A1B0GW54 56 aa9.6□□□□□ -0.87
LIG1-204ENST00000542460 ACYP1P07311 99 aa9.57□□□□□ -0.88
LIG1-204ENST00000542460 MT-ATP8P03928 68 aa9.56□□□□□ -0.88
LIG1-204ENST00000542460 RNF213Q63HN8 5207 aa9.55□□□□□ -0.88
LIG1-204ENST00000542460 TPRXLQ17RH7 258 aa9.55□□□□□ -0.88
LIG1-204ENST00000542460 Q96NJ1 140 aa9.52□□□□□ -0.88
LIG1-204ENST00000542460 KRTAP13-3Q3SY46 172 aa9.51□□□□□ -0.89
LIG1-204ENST00000542460 LINC00472Q9H8W2 130 aa9.5□□□□□ -0.89
LIG1-204ENST00000542460 LPAP08519 4548 aa9.49□□□□□ -0.89
LIG1-204ENST00000542460 IGKV4-1P06312 121 aa9.46□□□□□ -0.9
LIG1-204ENST00000542460 NREPQ16612 68 aa9.46□□□□□ -0.9
LIG1-204ENST00000542460 DEFB116Q30KQ4 102 aa9.46□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 79.6 ms