RNA–Protein interactions for RNA: ENST00000542238.5

RTN3-211, Transcript of reticulon 3, humanhuman

TSL 3

Gene RTN3, Length 735 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-211ENST00000542238 CFC1P0CG37 223 aa8.58□□□□□ -1.04
RTN3-211ENST00000542238 SMCPP49901 116 aaPredicted RBP8.58□□□□□ -1.04
RTN3-211ENST00000542238 XP32Q5T750 250 aa8.58□□□□□ -1.04
RTN3-211ENST00000542238 TIMM17BO60830 172 aa8.57□□□□□ -1.04
RTN3-211ENST00000542238 PSMB2P49721 201 aa8.57□□□□□ -1.04
RTN3-211ENST00000542238 PRO1854Q9UHT4 67 aa8.57□□□□□ -1.04
RTN3-211ENST00000542238 LOC107984156A0A0G2JMH3 177 aa8.56□□□□□ -1.04
RTN3-211ENST00000542238 B5MCH6 92 aa8.56□□□□□ -1.04
RTN3-211ENST00000542238 ARL17AQ8IVW1 177 aa8.56□□□□□ -1.04
RTN3-211ENST00000542238 ERC2-IT1O76042 136 aa8.55□□□□□ -1.04
RTN3-211ENST00000542238 TCL1BO95988 128 aa8.55□□□□□ -1.04
RTN3-211ENST00000542238 PPDPFLQ8WWR9 84 aa8.55□□□□□ -1.04
RTN3-211ENST00000542238 A0A0J9YXY3 114 aa8.54□□□□□ -1.04
RTN3-211ENST00000542238 TEN1Q86WV5 123 aa8.54□□□□□ -1.04
RTN3-211ENST00000542238 MTURNQ8N3F0 131 aa8.54□□□□□ -1.04
RTN3-211ENST00000542238 A4D1N5 150 aa8.53□□□□□ -1.04
RTN3-211ENST00000542238 C9orf153Q5TBE3 101 aa8.52□□□□□ -1.05
RTN3-211ENST00000542238 Q6ZRX8 168 aa8.52□□□□□ -1.05
RTN3-211ENST00000542238 SPANXDQ9BXN6 97 aa8.52□□□□□ -1.05
RTN3-211ENST00000542238 SPANXCQ9NY87 97 aa8.52□□□□□ -1.05
RTN3-211ENST00000542238 TRBV10-2A0A0K0K1G8 114 aa8.51□□□□□ -1.05
RTN3-211ENST00000542238 EIF4EBP3O60516 100 aaPredicted RBP8.51□□□□□ -1.05
RTN3-211ENST00000542238 MUSTN1Q8IVN3 82 aa8.51□□□□□ -1.05
RTN3-211ENST00000542238 LITAFQ99732 161 aa8.51□□□□□ -1.05
RTN3-211ENST00000542238 Q9BRP9 147 aa8.51□□□□□ -1.05
RTN3-211ENST00000542238 LCE2CQ5TA81 110 aa8.5□□□□□ -1.05
RTN3-211ENST00000542238 SCGB1C2P0DMR2 95 aa8.49□□□□□ -1.05
RTN3-211ENST00000542238 S100A7L2Q5SY68 101 aa8.48□□□□□ -1.05
RTN3-211ENST00000542238 COPS9Q8WXC6 57 aa8.48□□□□□ -1.05
RTN3-211ENST00000542238 NDUFC2O95298 119 aa8.47□□□□□ -1.05
RTN3-211ENST00000542238 IFITM1P13164 125 aa8.47□□□□□ -1.05
RTN3-211ENST00000542238 ATXN8Q156A1 80 aa8.47□□□□□ -1.05
RTN3-211ENST00000542238 ANKRD29Q8N6D5 301 aa8.47□□□□□ -1.05
RTN3-211ENST00000542238 A0A1B0GV72 72 aa8.46□□□□□ -1.06
RTN3-211ENST00000542238 ADAMTSL4-AS1Q5T5F5 129 aa8.46□□□□□ -1.06
RTN3-211ENST00000542238 IGLV8-61A0A075B6I0 122 aa8.44□□□□□ -1.06
RTN3-211ENST00000542238 TRAV23DV6A0A075B6W5 121 aa8.44□□□□□ -1.06
RTN3-211ENST00000542238 IGLV6-57P01721 117 aa8.44□□□□□ -1.06
RTN3-211ENST00000542238 MT1HP80294 61 aa8.44□□□□□ -1.06
RTN3-211ENST00000542238 Q1RN00 199 aa8.44□□□□□ -1.06
RTN3-211ENST00000542238 PCOTHQ58A44 107 aa8.44□□□□□ -1.06
RTN3-211ENST00000542238 LIMD2Q9BT23 127 aa8.44□□□□□ -1.06
RTN3-211ENST00000542238 C9JAW5 83 aa8.43□□□□□ -1.06
RTN3-211ENST00000542238 KRTAP19-2Q3LHN2 52 aa8.43□□□□□ -1.06
RTN3-211ENST00000542238 LINC00308Q8TCZ7 52 aa8.43□□□□□ -1.06
RTN3-211ENST00000542238 TRIAP1O43715 76 aa8.42□□□□□ -1.06
RTN3-211ENST00000542238 ZNF73O43830 326 aaPredicted RBP8.42□□□□□ -1.06
RTN3-211ENST00000542238 H3BT86 120 aa8.41□□□□□ -1.06
RTN3-211ENST00000542238 ST20-AS1Q8NBB2 130 aa8.41□□□□□ -1.06
RTN3-211ENST00000542238 C9orf92A6NGG3 77 aa8.4□□□□□ -1.06
RTN3-211ENST00000542238 MT-ATP8P03928 68 aa8.4□□□□□ -1.06
RTN3-211ENST00000542238 COX6CP09669 75 aa8.4□□□□□ -1.06
RTN3-211ENST00000542238 SOSTDC1Q6X4U4 206 aa8.4□□□□□ -1.06
RTN3-211ENST00000542238 H7C2G1 150 aa8.39□□□□□ -1.07
RTN3-211ENST00000542238 HRCT1Q6UXD1 115 aa8.39□□□□□ -1.07
RTN3-211ENST00000542238 LST1O00453 97 aa8.37□□□□□ -1.07
RTN3-211ENST00000542238 SPRR1BP22528 89 aa8.35□□□□□ -1.07
RTN3-211ENST00000542238 NPC2P61916 151 aa8.35□□□□□ -1.07
RTN3-211ENST00000542238 LAMTOR3Q9UHA4 124 aa8.35□□□□□ -1.07
RTN3-211ENST00000542238 Q6Q795 121 aa8.34□□□□□ -1.07
RTN3-211ENST00000542238 DHRS4-AS1Q9P1J3 65 aa8.34□□□□□ -1.07
RTN3-211ENST00000542238 FAM240AA0A1B0GVK7 77 aa8.33□□□□□ -1.08
RTN3-211ENST00000542238 M0R2T5 61 aa8.33□□□□□ -1.08
RTN3-211ENST00000542238 LORP23490 312 aaPredicted RBP8.33□□□□□ -1.08
RTN3-211ENST00000542238 KRTAP10-6P60371 365 aaPredicted RBP8.33□□□□□ -1.08
RTN3-211ENST00000542238 OR13C6PQ8NH95 151 aa8.31□□□□□ -1.08
RTN3-211ENST00000542238 TRAV13-2A0A0B4J235 113 aa8.3□□□□□ -1.08
RTN3-211ENST00000542238 SNCGO76070 127 aa8.3□□□□□ -1.08
RTN3-211ENST00000542238 CD164Q04900 197 aa8.3□□□□□ -1.08
RTN3-211ENST00000542238 CLEC2BQ92478 149 aa8.3□□□□□ -1.08
RTN3-211ENST00000542238 TEX49A0A1B0GTD5 131 aa8.29□□□□□ -1.08
RTN3-211ENST00000542238 COX6B2Q6YFQ2 88 aa8.29□□□□□ -1.08
RTN3-211ENST00000542238 TRACP01848 142 aa8.28□□□□□ -1.08
RTN3-211ENST00000542238 COX7BP24311 80 aa8.26□□□□□ -1.09
RTN3-211ENST00000542238 DEFB105AQ8NG35 78 aa8.26□□□□□ -1.09
RTN3-211ENST00000542238 TRBV7-6A0A0J9YX20 115 aa8.25□□□□□ -1.09
RTN3-211ENST00000542238 ACYP1P07311 99 aa8.25□□□□□ -1.09
RTN3-211ENST00000542238 ANAPC13Q9BS18 74 aa8.25□□□□□ -1.09
RTN3-211ENST00000542238 ELOF1P60002 83 aaKnown RBP8.24□□□□□ -1.09
RTN3-211ENST00000542238 Q5XG85 94 aa8.24□□□□□ -1.09
RTN3-211ENST00000542238 RPL37P61927 97 aaKnown RBP8.23□□□□□ -1.09
RTN3-211ENST00000542238 TRBV7-7A0A0K0K1E9 115 aa8.22□□□□□ -1.09
RTN3-211ENST00000542238 NDUFV3P56181 108 aaKnown RBP8.22□□□□□ -1.09
RTN3-211ENST00000542238 C6orf99Q4VX62 202 aa8.22□□□□□ -1.09
RTN3-211ENST00000542238 C1orf195Q5TG92 126 aa8.22□□□□□ -1.09
RTN3-211ENST00000542238 IMUPQ9GZP8 106 aa8.18□□□□□ -1.1
RTN3-211ENST00000542238 BAALC-AS2P0C853 105 aa8.17□□□□□ -1.1
RTN3-211ENST00000542238 SMIM29Q86T20 159 aa8.17□□□□□ -1.1
RTN3-211ENST00000542238 SMIM11BQ8TCY0 68 aa8.17□□□□□ -1.1
RTN3-211ENST00000542238 FAM218AQ96MZ4 157 aa8.17□□□□□ -1.1
RTN3-211ENST00000542238 H0YGX0 51 aa8.16□□□□□ -1.1
RTN3-211ENST00000542238 LINC00643Q86TS7 51 aa8.15□□□□□ -1.1
RTN3-211ENST00000542238 A0A0G2JQZ4 141 aa8.14□□□□□ -1.11
RTN3-211ENST00000542238 IGLV5-48A0A075B6I7 105 aa8.13□□□□□ -1.11
RTN3-211ENST00000542238 FLGP20930 4061 aaPredicted RBP8.12□□□□□ -1.11
RTN3-211ENST00000542238 OBSCN-AS1Q96MR7 158 aa8.11□□□□□ -1.11
RTN3-211ENST00000542238 A0A1B0GX51 115 aa8.1□□□□□ -1.11
RTN3-211ENST00000542238 DNAL4O96015 105 aa8.1□□□□□ -1.11
RTN3-211ENST00000542238 CCDC179H3BU77 68 aa8.09□□□□□ -1.11
RTN3-211ENST00000542238 F8WEM9 126 aa8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 80.6 ms