RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 ANAPC11Q9NYG5 84 aa10.56□□□□□ -0.72
USP28-208ENST00000540438 UBE2AP49459 152 aa10.55□□□□□ -0.72
USP28-208ENST00000540438 Q8NBF4 154 aa10.55□□□□□ -0.72
USP28-208ENST00000540438 TNP2Q05952 138 aa10.55□□□□□ -0.72
USP28-208ENST00000540438 LRCOL1A6NCL2 159 aa10.54□□□□□ -0.72
USP28-208ENST00000540438 WFDC13Q8IUB5 93 aa10.53□□□□□ -0.72
USP28-208ENST00000540438 DNAH2Q9P225 4427 aa10.53□□□□□ -0.72
USP28-208ENST00000540438 H7BZZ5 65 aa10.52□□□□□ -0.73
USP28-208ENST00000540438 CNBPP62633 177 aaKnown RBP10.52□□□□□ -0.73
USP28-208ENST00000540438 IGLV9-49A0A0B4J1Y8 123 aa10.51□□□□□ -0.73
USP28-208ENST00000540438 DSCR10P59022 87 aa10.5□□□□□ -0.73
USP28-208ENST00000540438 VPS13DQ5THJ4 4388 aa10.5□□□□□ -0.73
USP28-208ENST00000540438 TMEM258P61165 79 aa10.5□□□□□ -0.73
USP28-208ENST00000540438 J3KT08 172 aa10.49□□□□□ -0.73
USP28-208ENST00000540438 C9orf163Q8N9P6 203 aa10.49□□□□□ -0.73
USP28-208ENST00000540438 HECTD4Q9Y4D8 3996 aa10.48□□□□□ -0.73
USP28-208ENST00000540438 PRR4Q16378 134 aa10.48□□□□□ -0.73
USP28-208ENST00000540438 TMEM254Q8TBM7 123 aa10.47□□□□□ -0.73
USP28-208ENST00000540438 DNAH6Q9C0G6 4158 aa10.45□□□□□ -0.74
USP28-208ENST00000540438 FAM236DA0A1B0GTK5 79 aa10.45□□□□□ -0.74
USP28-208ENST00000540438 FAM236CP0DP71 79 aa10.45□□□□□ -0.74
USP28-208ENST00000540438 Q6ZRN7 208 aaPredicted RBP10.45□□□□□ -0.74
USP28-208ENST00000540438 DYNC2H1Q8NCM8 4307 aaKnown RBP10.43□□□□□ -0.74
USP28-208ENST00000540438 C4orf26Q17RF5 130 aa10.43□□□□□ -0.74
USP28-208ENST00000540438 LY6G6CO95867 125 aa10.42□□□□□ -0.74
USP28-208ENST00000540438 OCR1Q9BZK8 76 aa10.42□□□□□ -0.74
USP28-208ENST00000540438 NUPR2A6NF83 97 aa10.42□□□□□ -0.74
USP28-208ENST00000540438 SPRR4Q96PI1 79 aa10.41□□□□□ -0.74
USP28-208ENST00000540438 C14orf177Q52M58 125 aa10.4□□□□□ -0.74
USP28-208ENST00000540438 A0A087WTM6 91 aa10.39□□□□□ -0.75
USP28-208ENST00000540438 KLKP1Q107X0 134 aa10.38□□□□□ -0.75
USP28-208ENST00000540438 DNAH17Q9UFH2 4485 aa10.37□□□□□ -0.75
USP28-208ENST00000540438 RTL8CO15255 209 aa10.36□□□□□ -0.75
USP28-208ENST00000540438 LINC00474Q9P2X8 69 aa10.36□□□□□ -0.75
USP28-208ENST00000540438 DNAH11Q96DT5 4516 aa10.35□□□□□ -0.75
USP28-208ENST00000540438 DNAH8Q96JB1 4490 aa10.35□□□□□ -0.75
USP28-208ENST00000540438 H0Y9J4 135 aa10.35□□□□□ -0.75
USP28-208ENST00000540438 PSORS1C2Q9UIG4 136 aa10.32□□□□□ -0.76
USP28-208ENST00000540438 HCG22E2RYF7 251 aa10.32□□□□□ -0.76
USP28-208ENST00000540438 BCE1O60756 84 aa10.31□□□□□ -0.76
USP28-208ENST00000540438 SPACA4Q8TDM5 124 aa10.31□□□□□ -0.76
USP28-208ENST00000540438 HYDINQ4G0P3 5121 aa10.31□□□□□ -0.76
USP28-208ENST00000540438 FAM229BQ4G0N7 80 aa10.3□□□□□ -0.76
USP28-208ENST00000540438 A0A0U1RQV1 116 aa10.29□□□□□ -0.76
USP28-208ENST00000540438 MPLKIPQ8TAP9 179 aa10.29□□□□□ -0.76
USP28-208ENST00000540438 MOBPQ13875 183 aa10.28□□□□□ -0.76
USP28-208ENST00000540438 IGLV5-52A0A0A0MRZ9 124 aa10.28□□□□□ -0.76
USP28-208ENST00000540438 RPS28P62857 69 aaKnown RBP10.25□□□□□ -0.77
USP28-208ENST00000540438 Q5XG85 94 aa10.25□□□□□ -0.77
USP28-208ENST00000540438 SPINK6Q6UWN8 80 aa10.25□□□□□ -0.77
USP28-208ENST00000540438 LINC00208Q96KT6 92 aa10.23□□□□□ -0.77
USP28-208ENST00000540438 KRTAP10-2P60368 255 aa10.23□□□□□ -0.77
USP28-208ENST00000540438 C1orf134Q5TEV5 83 aa10.22□□□□□ -0.77
USP28-208ENST00000540438 KRTAP13-1Q8IUC0 172 aa10.22□□□□□ -0.77
USP28-208ENST00000540438 CASC2Q6XLA1 102 aa10.22□□□□□ -0.77
USP28-208ENST00000540438 IGLV8-61A0A075B6I0 122 aa10.2□□□□□ -0.78
USP28-208ENST00000540438 SERP1Q9Y6X1 66 aa10.2□□□□□ -0.78
USP28-208ENST00000540438 FP248Q71RG6 208 aaPredicted RBP10.19□□□□□ -0.78
USP28-208ENST00000540438 LINC00472Q9H8W2 130 aa10.19□□□□□ -0.78
USP28-208ENST00000540438 IGHV6-1A0A0B4J1U7 121 aa10.18□□□□□ -0.78
USP28-208ENST00000540438 Q6ZR54 194 aa10.18□□□□□ -0.78
USP28-208ENST00000540438 LRP1BQ9NZR2 4599 aa10.17□□□□□ -0.78
USP28-208ENST00000540438 PRR15Q8IV56 129 aa10.17□□□□□ -0.78
USP28-208ENST00000540438 CIRBP-AS1Q8TBR5 109 aa10.17□□□□□ -0.78
USP28-208ENST00000540438 DNAH5Q8TE73 4624 aa10.16□□□□□ -0.78
USP28-208ENST00000540438 A0A087X002 238 aa10.16□□□□□ -0.78
USP28-208ENST00000540438 NOTCH2NLQ7Z3S9 236 aa10.16□□□□□ -0.78
USP28-208ENST00000540438 NDUFS5O43920 106 aa10.16□□□□□ -0.78
USP28-208ENST00000540438 SPRR1BP22528 89 aa10.15□□□□□ -0.78
USP28-208ENST00000540438 A0A1B0GW54 56 aa10.15□□□□□ -0.79
USP28-208ENST00000540438 A8MWP4 228 aa10.13□□□□□ -0.79
USP28-208ENST00000540438 NDUFC1O43677 76 aa10.12□□□□□ -0.79
USP28-208ENST00000540438 WWC2-AS2Q96NR7 200 aa10.12□□□□□ -0.79
USP28-208ENST00000540438 H0Y9P7 68 aa10.11□□□□□ -0.79
USP28-208ENST00000540438 PCOTHQ58A44 107 aa10.11□□□□□ -0.79
USP28-208ENST00000540438 KRTAP29-1A8MX34 341 aaPredicted RBP10.1□□□□□ -0.79
USP28-208ENST00000540438 ZNF861PO60384 105 aa10.1□□□□□ -0.79
USP28-208ENST00000540438 ALMS1Q8TCU4 4167 aa10.1□□□□□ -0.79
USP28-208ENST00000540438 C1orf64Q8NEQ6 169 aa10.08□□□□□ -0.8
USP28-208ENST00000540438 Q96NJ1 140 aa10.08□□□□□ -0.8
USP28-208ENST00000540438 PKHD1P08F94 4074 aa10.08□□□□□ -0.8
USP28-208ENST00000540438 FAT2Q9NYQ8 4349 aa10.07□□□□□ -0.8
USP28-208ENST00000540438 MP68P56378 58 aa10.07□□□□□ -0.8
USP28-208ENST00000540438 MMP24-AS1A0A0U1RRL7 71 aa10.07□□□□□ -0.8
USP28-208ENST00000540438 hDV103S1A0JD37 113 aa10.07□□□□□ -0.8
USP28-208ENST00000540438 PLAC8Q9NZF1 115 aa10.07□□□□□ -0.8
USP28-208ENST00000540438 C5orf47Q569G3 176 aa10.07□□□□□ -0.8
USP28-208ENST00000540438 RETNLBQ9BQ08 111 aa10.07□□□□□ -0.8
USP28-208ENST00000540438 NDUFB1O75438 58 aa10.05□□□□□ -0.8
USP28-208ENST00000540438 ZCCHC13Q8WW36 166 aaKnown RBP10.05□□□□□ -0.8
USP28-208ENST00000540438 LINC00336Q6ZUF6 198 aa10.04□□□□□ -0.8
USP28-208ENST00000540438 SMIM26A0A096LP01 95 aa10.03□□□□□ -0.8
USP28-208ENST00000540438 SVIPQ8NHG7 77 aa10.03□□□□□ -0.8
USP28-208ENST00000540438 IGLV7-43P04211 117 aa10.03□□□□□ -0.8
USP28-208ENST00000540438 KRTAP10-1P60331 282 aa10.03□□□□□ -0.8
USP28-208ENST00000540438 LCE6AA0A183 80 aa10.01□□□□□ -0.81
USP28-208ENST00000540438 VPS13BQ7Z7G8 4022 aa10.01□□□□□ -0.81
USP28-208ENST00000540438 CDK2AP2O75956 126 aa10□□□□□ -0.81
USP28-208ENST00000540438 PKIGQ9Y2B9 76 aa10□□□□□ -0.81
USP28-208ENST00000540438 PSPHP1O15172 72 aa10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms