RNA–Protein interactions for RNA: ENST00000526000.5

CD44-221, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 722 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-221ENST00000526000 SMIM11BQ8TCY0 68 aa3.72□□□□□ -1.81
CD44-221ENST00000526000 CRCT1Q9UGL9 99 aa3.72□□□□□ -1.81
CD44-221ENST00000526000 A0A1B0GX51 115 aa3.71□□□□□ -1.82
CD44-221ENST00000526000 SLC25A20O43772 301 aa3.71□□□□□ -1.82
CD44-221ENST00000526000 Q1RN00 199 aa3.71□□□□□ -1.82
CD44-221ENST00000526000 KRTAP13-3Q3SY46 172 aa3.71□□□□□ -1.82
CD44-221ENST00000526000 SMCR5Q8TEV8 140 aa3.71□□□□□ -1.82
CD44-221ENST00000526000 SPRR4Q96PI1 79 aa3.71□□□□□ -1.82
CD44-221ENST00000526000 GHRHP01286 108 aa3.7□□□□□ -1.82
CD44-221ENST00000526000 LYRM7Q5U5X0 104 aa3.7□□□□□ -1.82
CD44-221ENST00000526000 SPAG11AQ6PDA7 123 aa3.7□□□□□ -1.82
CD44-221ENST00000526000 H3BQ85 93 aa3.69□□□□□ -1.82
CD44-221ENST00000526000 ASB16-AS1Q495Z4 193 aa3.69□□□□□ -1.82
CD44-221ENST00000526000 GAGE2AQ6NT46 116 aa3.69□□□□□ -1.82
CD44-221ENST00000526000 IGLV9-49A0A0B4J1Y8 123 aa3.68□□□□□ -1.82
CD44-221ENST00000526000 H7C2G1 150 aa3.68□□□□□ -1.82
CD44-221ENST00000526000 SEC61BP60468 96 aaKnown RBP3.68□□□□□ -1.82
CD44-221ENST00000526000 OCIAD2Q56VL3 154 aa3.68□□□□□ -1.82
CD44-221ENST00000526000 LINC00575Q6W349 94 aa3.68□□□□□ -1.82
CD44-221ENST00000526000 FP248Q71RG6 208 aaPredicted RBP3.68□□□□□ -1.82
CD44-221ENST00000526000 PPDPFLQ8WWR9 84 aa3.68□□□□□ -1.82
CD44-221ENST00000526000 Q9BRP9 147 aa3.68□□□□□ -1.82
CD44-221ENST00000526000 hADV29S1A0JD25 119 aa3.67□□□□□ -1.82
CD44-221ENST00000526000 K7ERJ3 54 aa3.67□□□□□ -1.82
CD44-221ENST00000526000 SPRR1BP22528 89 aa3.67□□□□□ -1.82
CD44-221ENST00000526000 PSMB2P49721 201 aa3.67□□□□□ -1.82
CD44-221ENST00000526000 LINC00483Q53H64 154 aa3.67□□□□□ -1.82
CD44-221ENST00000526000 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP3.67□□□□□ -1.82
CD44-221ENST00000526000 TEX49A0A1B0GTD5 131 aa3.66□□□□□ -1.82
CD44-221ENST00000526000 TRIAP1O43715 76 aa3.66□□□□□ -1.82
CD44-221ENST00000526000 ERC2-IT1O76042 136 aa3.66□□□□□ -1.82
CD44-221ENST00000526000 SCGB1C2P0DMR2 95 aa3.66□□□□□ -1.82
CD44-221ENST00000526000 MOBPQ13875 183 aa3.66□□□□□ -1.82
CD44-221ENST00000526000 BATFQ16520 125 aa3.66□□□□□ -1.82
CD44-221ENST00000526000 COL5A1-AS1Q5SY13 56 aa3.66□□□□□ -1.82
CD44-221ENST00000526000 IGLV5-48A0A075B6I7 105 aa3.65□□□□□ -1.83
CD44-221ENST00000526000 TRBV20-1A0A075B6N2 111 aa3.65□□□□□ -1.83
CD44-221ENST00000526000 DNAL4O96015 105 aa3.65□□□□□ -1.83
CD44-221ENST00000526000 SPINK1P00995 79 aa3.65□□□□□ -1.83
CD44-221ENST00000526000 TRACP01848 142 aa3.65□□□□□ -1.83
CD44-221ENST00000526000 SNHG12Q9BXW3 62 aa3.65□□□□□ -1.83
CD44-221ENST00000526000 C9orf118A6NHY6 69 aa3.64□□□□□ -1.83
CD44-221ENST00000526000 LST1O00453 97 aa3.64□□□□□ -1.83
CD44-221ENST00000526000 ATXN8Q156A1 80 aa3.64□□□□□ -1.83
CD44-221ENST00000526000 Q8N377 158 aa3.64□□□□□ -1.83
CD44-221ENST00000526000 LAMTOR3Q9UHA4 124 aa3.64□□□□□ -1.83
CD44-221ENST00000526000 C9orf92A6NGG3 77 aa3.63□□□□□ -1.83
CD44-221ENST00000526000 PCP4L1A6NKN8 68 aa3.63□□□□□ -1.83
CD44-221ENST00000526000 TAX1BP3O14907 124 aa3.63□□□□□ -1.83
CD44-221ENST00000526000 FABP2P12104 132 aa3.63□□□□□ -1.83
CD44-221ENST00000526000 PCOTHQ58A44 107 aa3.63□□□□□ -1.83
CD44-221ENST00000526000 HRCT1Q6UXD1 115 aa3.63□□□□□ -1.83
CD44-221ENST00000526000 Q6ZQY7 126 aa3.63□□□□□ -1.83
CD44-221ENST00000526000 SSBP3-AS1Q7Z2R9 100 aa3.63□□□□□ -1.83
CD44-221ENST00000526000 IGLV8-61A0A075B6I0 122 aa3.62□□□□□ -1.83
CD44-221ENST00000526000 H3BUT2 72 aa3.62□□□□□ -1.83
CD44-221ENST00000526000 TMEM256-PLSCR3K7ERE1 68 aa3.62□□□□□ -1.83
CD44-221ENST00000526000 C9orf153Q5TBE3 101 aa3.62□□□□□ -1.83
CD44-221ENST00000526000 FAM218AQ96MZ4 157 aa3.62□□□□□ -1.83
CD44-221ENST00000526000 ORMDL1Q9P0S3 153 aa3.62□□□□□ -1.83
CD44-221ENST00000526000 A0A1W2PPM0 123 aa3.61□□□□□ -1.83
CD44-221ENST00000526000 F8WEM9 126 aa3.61□□□□□ -1.83
CD44-221ENST00000526000 MT1HP80294 61 aa3.61□□□□□ -1.83
CD44-221ENST00000526000 ST20-AS1Q8NBB2 130 aa3.61□□□□□ -1.83
CD44-221ENST00000526000 CLEC2BQ92478 149 aa3.61□□□□□ -1.83
CD44-221ENST00000526000 FSIP2Q5CZC0 6907 aa3.6□□□□□ -1.83
CD44-221ENST00000526000 TCL1BO95988 128 aa3.6□□□□□ -1.83
CD44-221ENST00000526000 PCP4P48539 62 aa3.6□□□□□ -1.83
CD44-221ENST00000526000 UBE2V1Q13404 147 aa3.6□□□□□ -1.83
CD44-221ENST00000526000 C21orf62-AS1Q17RA5 79 aa3.6□□□□□ -1.83
CD44-221ENST00000526000 KRTAP19-2Q3LHN2 52 aa3.6□□□□□ -1.83
CD44-221ENST00000526000 Q6JHZ5 121 aa3.6□□□□□ -1.83
CD44-221ENST00000526000 M0R2T5 61 aa3.59□□□□□ -1.83
CD44-221ENST00000526000 RPS29P62273 56 aaKnown RBP3.59□□□□□ -1.83
CD44-221ENST00000526000 CD164Q04900 197 aa3.59□□□□□ -1.83
CD44-221ENST00000526000 SMIM29Q86T20 159 aa3.59□□□□□ -1.83
CD44-221ENST00000526000 DEFB105AQ8NG35 78 aa3.59□□□□□ -1.83
CD44-221ENST00000526000 H3BT86 120 aa3.58□□□□□ -1.84
CD44-221ENST00000526000 LCE3BQ5TA77 95 aa3.58□□□□□ -1.84
CD44-221ENST00000526000 GTF2H5Q6ZYL4 71 aa3.58□□□□□ -1.84
CD44-221ENST00000526000 KRTAP4-8A0A0G2JLE6 195 aa3.57□□□□□ -1.84
CD44-221ENST00000526000 BAALC-AS2P0C853 105 aa3.57□□□□□ -1.84
CD44-221ENST00000526000 NDUFV3P56181 108 aaKnown RBP3.57□□□□□ -1.84
CD44-221ENST00000526000 KRTAP10-6P60371 365 aaPredicted RBP3.57□□□□□ -1.84
CD44-221ENST00000526000 NAA38Q9BRA0 125 aaKnown RBP3.57□□□□□ -1.84
CD44-221ENST00000526000 SPCS1Q9Y6A9 102 aa3.57□□□□□ -1.84
CD44-221ENST00000526000 JMJD7-PLA2G4BH0Y9G9 81 aa3.56□□□□□ -1.84
CD44-221ENST00000526000 K7EP34 96 aa3.56□□□□□ -1.84
CD44-221ENST00000526000 PDE6GP18545 87 aa3.56□□□□□ -1.84
CD44-221ENST00000526000 KRTAP9-9Q9BYP9 154 aa3.56□□□□□ -1.84
CD44-221ENST00000526000 KRTAP9-4Q9BYQ2 154 aa3.56□□□□□ -1.84
CD44-221ENST00000526000 C9JAW5 83 aa3.55□□□□□ -1.84
CD44-221ENST00000526000 H3BMG7 143 aa3.55□□□□□ -1.84
CD44-221ENST00000526000 RBM3P98179 157 aaKnown RBP3.55□□□□□ -1.84
CD44-221ENST00000526000 Q5XG85 94 aa3.55□□□□□ -1.84
CD44-221ENST00000526000 Q6Q795 121 aa3.55□□□□□ -1.84
CD44-221ENST00000526000 COX6B2Q6YFQ2 88 aa3.55□□□□□ -1.84
CD44-221ENST00000526000 ANKRD29Q8N6D5 301 aa3.55□□□□□ -1.84
CD44-221ENST00000526000 LIMD2Q9BT23 127 aa3.55□□□□□ -1.84
CD44-221ENST00000526000 A0A0G2JQZ4 141 aa3.54□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 87 ms