RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 FAM229BQ4G0N7 80 aa9.05□□□□□ -0.96
LSM1-203ENST00000520755 KRTAP13-2Q52LG2 175 aa9.05□□□□□ -0.96
LSM1-203ENST00000520755 SMIM29Q86T20 159 aa9.05□□□□□ -0.96
LSM1-203ENST00000520755 TRBV20-1A0A075B6N2 111 aa9.04□□□□□ -0.96
LSM1-203ENST00000520755 TEX49A0A1B0GTD5 131 aa9.04□□□□□ -0.96
LSM1-203ENST00000520755 C3orf22Q8N5N4 141 aa9.04□□□□□ -0.96
LSM1-203ENST00000520755 SPCS1Q9Y6A9 102 aa9.04□□□□□ -0.96
LSM1-203ENST00000520755 DNAL4O96015 105 aa9.03□□□□□ -0.96
LSM1-203ENST00000520755 HERC1Q15751 4861 aa9.02□□□□□ -0.97
LSM1-203ENST00000520755 SNCGO76070 127 aa9.02□□□□□ -0.97
LSM1-203ENST00000520755 OCIAD2Q56VL3 154 aa9.01□□□□□ -0.97
LSM1-203ENST00000520755 TYMSOSQ8TAI1 123 aa9.01□□□□□ -0.97
LSM1-203ENST00000520755 ORMDL1Q9P0S3 153 aa9.01□□□□□ -0.97
LSM1-203ENST00000520755 H3BMG7 143 aa9□□□□□ -0.97
LSM1-203ENST00000520755 K7EP34 96 aa9□□□□□ -0.97
LSM1-203ENST00000520755 PPDPFLQ8WWR9 84 aa9□□□□□ -0.97
LSM1-203ENST00000520755 IGLV9-49A0A0B4J1Y8 123 aa8.98□□□□□ -0.97
LSM1-203ENST00000520755 C9JAW5 83 aa8.98□□□□□ -0.97
LSM1-203ENST00000520755 MTURNQ8N3F0 131 aa8.98□□□□□ -0.97
LSM1-203ENST00000520755 MOBPQ13875 183 aa8.96□□□□□ -0.98
LSM1-203ENST00000520755 LAMTOR3Q9UHA4 124 aa8.96□□□□□ -0.98
LSM1-203ENST00000520755 A0A1B0GV90 55 aa8.94□□□□□ -0.98
LSM1-203ENST00000520755 BAALC-AS2P0C853 105 aa8.94□□□□□ -0.98
LSM1-203ENST00000520755 PRO0461Q9UI25 63 aa8.94□□□□□ -0.98
LSM1-203ENST00000520755 TMEM256-PLSCR3K7ERE1 68 aa8.93□□□□□ -0.98
LSM1-203ENST00000520755 NDUFV3P56181 108 aaKnown RBP8.93□□□□□ -0.98
LSM1-203ENST00000520755 C9orf153Q5TBE3 101 aa8.93□□□□□ -0.98
LSM1-203ENST00000520755 Q8NBF4 154 aa8.93□□□□□ -0.98
LSM1-203ENST00000520755 IGLV8-61A0A075B6I0 122 aa8.92□□□□□ -0.98
LSM1-203ENST00000520755 H3BQ85 93 aa8.92□□□□□ -0.98
LSM1-203ENST00000520755 GHRHP01286 108 aa8.92□□□□□ -0.98
LSM1-203ENST00000520755 SMCPP49901 116 aaPredicted RBP8.92□□□□□ -0.98
LSM1-203ENST00000520755 UBE2V1Q13404 147 aa8.92□□□□□ -0.98
LSM1-203ENST00000520755 H3BT86 120 aa8.91□□□□□ -0.98
LSM1-203ENST00000520755 GTF2H5Q6ZYL4 71 aa8.91□□□□□ -0.98
LSM1-203ENST00000520755 LINC00304Q8N9R0 145 aa8.91□□□□□ -0.98
LSM1-203ENST00000520755 A0A0G2JQZ4 141 aa8.9□□□□□ -0.98
LSM1-203ENST00000520755 A0A1B0GV72 72 aa8.89□□□□□ -0.99
LSM1-203ENST00000520755 F8WEM9 126 aa8.89□□□□□ -0.99
LSM1-203ENST00000520755 ANKRD29Q8N6D5 301 aa8.89□□□□□ -0.99
LSM1-203ENST00000520755 IGFL1Q6UW32 110 aa8.87□□□□□ -0.99
LSM1-203ENST00000520755 SSBP3-AS1Q7Z2R9 100 aa8.87□□□□□ -0.99
LSM1-203ENST00000520755 C4orf48Q5BLP8 95 aa8.85□□□□□ -0.99
LSM1-203ENST00000520755 OBSCN-AS1Q96MR7 158 aa8.84□□□□□ -0.99
LSM1-203ENST00000520755 Q6JHZ5 121 aa8.83□□□□□ -1
LSM1-203ENST00000520755 SPAG11AQ6PDA7 123 aa8.83□□□□□ -1
LSM1-203ENST00000520755 HMCN2Q8NDA2 5059 aa8.82□□□□□ -1
LSM1-203ENST00000520755 TRBV7-4A0A0J9YYF1 115 aa8.82□□□□□ -1
LSM1-203ENST00000520755 RBM3P98179 157 aaKnown RBP8.8□□□□□ -1
LSM1-203ENST00000520755 A0A1W2PNM2 257 aa8.79□□□□□ -1
LSM1-203ENST00000520755 F8W1H4 67 aa8.79□□□□□ -1
LSM1-203ENST00000520755 HRCT1Q6UXD1 115 aa8.79□□□□□ -1
LSM1-203ENST00000520755 JMJD7-PLA2G4BH0Y9G9 81 aa8.78□□□□□ -1
LSM1-203ENST00000520755 C14orf132Q9NPU4 83 aa8.78□□□□□ -1
LSM1-203ENST00000520755 SPINK1P00995 79 aa8.77□□□□□ -1.01
LSM1-203ENST00000520755 CD164Q04900 197 aa8.77□□□□□ -1.01
LSM1-203ENST00000520755 LOC110117498A0A087WWA1 95 aa8.75□□□□□ -1.01
LSM1-203ENST00000520755 Q6Q795 121 aa8.75□□□□□ -1.01
LSM1-203ENST00000520755 Q6ZQT0 140 aa8.75□□□□□ -1.01
LSM1-203ENST00000520755 DSCR8Q96T75 97 aa8.75□□□□□ -1.01
LSM1-203ENST00000520755 RETNLBQ9BQ08 111 aa8.75□□□□□ -1.01
LSM1-203ENST00000520755 TRBV7-7A0A0K0K1E9 115 aa8.74□□□□□ -1.01
LSM1-203ENST00000520755 PRR4Q16378 134 aa8.74□□□□□ -1.01
LSM1-203ENST00000520755 ETDBQ3ZM63 59 aa8.74□□□□□ -1.01
LSM1-203ENST00000520755 TEN1Q86WV5 123 aa8.74□□□□□ -1.01
LSM1-203ENST00000520755 CCKP06307 115 aa8.73□□□□□ -1.01
LSM1-203ENST00000520755 RPS29P62273 56 aaKnown RBP8.73□□□□□ -1.01
LSM1-203ENST00000520755 VPS25Q9BRG1 176 aa8.69□□□□□ -1.02
LSM1-203ENST00000520755 A0A087WSZ3 146 aa8.68□□□□□ -1.02
LSM1-203ENST00000520755 PDE6GP18545 87 aa8.68□□□□□ -1.02
LSM1-203ENST00000520755 Q5XG85 94 aa8.68□□□□□ -1.02
LSM1-203ENST00000520755 LIMD2Q9BT23 127 aa8.68□□□□□ -1.02
LSM1-203ENST00000520755 LPAP08519 4548 aa8.64□□□□□ -1.03
LSM1-203ENST00000520755 ASB16-AS1Q495Z4 193 aa8.63□□□□□ -1.03
LSM1-203ENST00000520755 IGLV7-46A0A075B6I9 117 aa8.62□□□□□ -1.03
LSM1-203ENST00000520755 FP248Q71RG6 208 aaPredicted RBP8.61□□□□□ -1.03
LSM1-203ENST00000520755 Q96NJ1 140 aa8.61□□□□□ -1.03
LSM1-203ENST00000520755 LRP2P98164 4655 aa8.6□□□□□ -1.03
LSM1-203ENST00000520755 C21orf62-AS1Q17RA5 79 aa8.6□□□□□ -1.03
LSM1-203ENST00000520755 C1orf195Q5TG92 126 aa8.6□□□□□ -1.03
LSM1-203ENST00000520755 SS18L2Q9UHA2 77 aa8.6□□□□□ -1.03
LSM1-203ENST00000520755 A0A1B0GW54 56 aa8.58□□□□□ -1.04
LSM1-203ENST00000520755 LINC00472Q9H8W2 130 aa8.55□□□□□ -1.04
LSM1-203ENST00000520755 TPRXLQ17RH7 258 aa8.53□□□□□ -1.04
LSM1-203ENST00000520755 LINC00846Q9NV44 126 aa8.53□□□□□ -1.04
LSM1-203ENST00000520755 UBR4Q5T4S7 5183 aa8.52□□□□□ -1.05
LSM1-203ENST00000520755 DEFB116Q30KQ4 102 aa8.51□□□□□ -1.05
LSM1-203ENST00000520755 Q6ZVQ6 151 aa8.5□□□□□ -1.05
LSM1-203ENST00000520755 CDIP1Q9H305 208 aa8.5□□□□□ -1.05
LSM1-203ENST00000520755 KRTAP13-3Q3SY46 172 aa8.49□□□□□ -1.05
LSM1-203ENST00000520755 FAM240AA0A1B0GVK7 77 aa8.48□□□□□ -1.05
LSM1-203ENST00000520755 IGKV4-1P06312 121 aa8.47□□□□□ -1.05
LSM1-203ENST00000520755 NREPQ16612 68 aa8.47□□□□□ -1.05
LSM1-203ENST00000520755 SIGMAR1Q99720 223 aa8.46□□□□□ -1.06
LSM1-203ENST00000520755 C9orf92A6NGG3 77 aa8.44□□□□□ -1.06
LSM1-203ENST00000520755 ACYP1P07311 99 aa8.44□□□□□ -1.06
LSM1-203ENST00000520755 UBL5Q9BZL1 73 aa8.43□□□□□ -1.06
LSM1-203ENST00000520755 J3KT08 172 aa8.41□□□□□ -1.06
LSM1-203ENST00000520755 DSCR10P59022 87 aa8.41□□□□□ -1.06
LSM1-203ENST00000520755 IGKV3D-7A0A0C4DH55 119 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 78.3 ms