RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 TLN1Q9Y490 2541 aaKnown RBP2.2□□□□□ -2.06
USP53-205ENST00000509769 ANKHD1Q8IWZ3 2542 aaKnown RBP2.2□□□□□ -2.06
USP53-205ENST00000509769 KRTAP29-1A8MX34 341 aaPredicted RBP2.2□□□□□ -2.06
USP53-205ENST00000509769 ADM2Q7Z4H4 148 aa2.2□□□□□ -2.06
USP53-205ENST00000509769 CFAP46Q8IYW2 2715 aa2.2□□□□□ -2.06
USP53-205ENST00000509769 J3QL48 77 aa2.2□□□□□ -2.06
USP53-205ENST00000509769 A0A096LNT2 108 aa2.19□□□□□ -2.06
USP53-205ENST00000509769 Q8N1X5 172 aa2.19□□□□□ -2.06
USP53-205ENST00000509769 C10orf99Q6UWK7 81 aa2.19□□□□□ -2.06
USP53-205ENST00000509769 TEX15Q9BXT5 2789 aa2.18□□□□□ -2.06
USP53-205ENST00000509769 R4GN34 69 aa2.17□□□□□ -2.06
USP53-205ENST00000509769 ABCA1O95477 2261 aa2.17□□□□□ -2.06
USP53-205ENST00000509769 TET2Q6N021 2002 aaPredicted RBP2.17□□□□□ -2.06
USP53-205ENST00000509769 KRTAP11-1Q8IUC1 163 aa2.17□□□□□ -2.06
USP53-205ENST00000509769 ABCA4P78363 2273 aa2.17□□□□□ -2.06
USP53-205ENST00000509769 ZNF407Q9C0G0 2248 aa2.17□□□□□ -2.06
USP53-205ENST00000509769 SZT2Q5T011 3432 aa2.17□□□□□ -2.06
USP53-205ENST00000509769 RPS29P62273 56 aaKnown RBP2.17□□□□□ -2.06
USP53-205ENST00000509769 GIG44P09565 113 aaPredicted RBP2.16□□□□□ -2.06
USP53-205ENST00000509769 ITPR3Q14573 2671 aa2.16□□□□□ -2.06
USP53-205ENST00000509769 A8MUU9 505 aa2.16□□□□□ -2.06
USP53-205ENST00000509769 ITPR1Q14643 2758 aa2.16□□□□□ -2.06
USP53-205ENST00000509769 FAM168BA1KXE4 195 aa2.16□□□□□ -2.06
USP53-205ENST00000509769 BIRC6Q9NR09 4857 aa2.16□□□□□ -2.06
USP53-205ENST00000509769 PCNTO95613 3336 aa2.15□□□□□ -2.07
USP53-205ENST00000509769 KRTAP26-1Q6PEX3 210 aa2.15□□□□□ -2.07
USP53-205ENST00000509769 K7EIL1 84 aa2.15□□□□□ -2.07
USP53-205ENST00000509769 Q6ZSA8 131 aa2.14□□□□□ -2.07
USP53-205ENST00000509769 UNC80Q8N2C7 3258 aa2.14□□□□□ -2.07
USP53-205ENST00000509769 LCE2BO14633 110 aa2.13□□□□□ -2.07
USP53-205ENST00000509769 HIVEP1P15822 2718 aa2.13□□□□□ -2.07
USP53-205ENST00000509769 Q8NDZ9 215 aa2.13□□□□□ -2.07
USP53-205ENST00000509769 INE1O15225 51 aa2.12□□□□□ -2.07
USP53-205ENST00000509769 PKDREJQ9NTG1 2253 aa2.12□□□□□ -2.07
USP53-205ENST00000509769 A0A087WTM6 91 aa2.12□□□□□ -2.07
USP53-205ENST00000509769 RANBP2P49792 3224 aaKnown RBP2.12□□□□□ -2.07
USP53-205ENST00000509769 AKAP13Q12802 2813 aa2.12□□□□□ -2.07
USP53-205ENST00000509769 SORL1Q92673 2214 aa2.12□□□□□ -2.07
USP53-205ENST00000509769 GOLGB1Q14789 3259 aaKnown RBP2.11□□□□□ -2.07
USP53-205ENST00000509769 TNP1P09430 55 aa2.11□□□□□ -2.07
USP53-205ENST00000509769 P0C880 135 aa2.11□□□□□ -2.07
USP53-205ENST00000509769 PLAC8Q9NZF1 115 aa2.11□□□□□ -2.07
USP53-205ENST00000509769 SETD2Q9BYW2 2564 aaPredicted RBP2.11□□□□□ -2.07
USP53-205ENST00000509769 CCDC168Q8NDH2 2452 aa2.1□□□□□ -2.07
USP53-205ENST00000509769 LAMA2P24043 3122 aaKnown RBP2.1□□□□□ -2.07
USP53-205ENST00000509769 JMJD1CQ15652 2540 aa2.1□□□□□ -2.07
USP53-205ENST00000509769 CHD7Q9P2D1 2997 aa2.1□□□□□ -2.07
USP53-205ENST00000509769 REV3LO60673 3130 aa2.1□□□□□ -2.07
USP53-205ENST00000509769 KRTAP23-1A1A580 65 aa2.09□□□□□ -2.07
USP53-205ENST00000509769 ATRQ13535 2644 aa2.09□□□□□ -2.07
USP53-205ENST00000509769 WDR87Q6ZQQ6 2873 aa2.09□□□□□ -2.07
USP53-205ENST00000509769 C9orf92A6NGG3 77 aa2.09□□□□□ -2.07
USP53-205ENST00000509769 LOC100996750A0A140TA64 210 aa2.09□□□□□ -2.08
USP53-205ENST00000509769 KRTAP4-6Q9BYQ5 205 aa2.09□□□□□ -2.08
USP53-205ENST00000509769 CR1P17927 2039 aa2.08□□□□□ -2.08
USP53-205ENST00000509769 AKAP6Q13023 2319 aa2.08□□□□□ -2.08
USP53-205ENST00000509769 RP1L1Q8IWN7 2480 aaPredicted RBP2.07□□□□□ -2.08
USP53-205ENST00000509769 CFAP54Q96N23 3096 aa2.07□□□□□ -2.08
USP53-205ENST00000509769 PDZD2O15018 2839 aa2.07□□□□□ -2.08
USP53-205ENST00000509769 KRTAP4-16G5E9R7 235 aaPredicted RBP2.07□□□□□ -2.08
USP53-205ENST00000509769 KRTAP3-3Q9BYR6 98 aa2.07□□□□□ -2.08
USP53-205ENST00000509769 KRTAP3-2Q9BYR7 98 aa2.07□□□□□ -2.08
USP53-205ENST00000509769 DSPP15924 2871 aaKnown RBP2.06□□□□□ -2.08
USP53-205ENST00000509769 MUC4Q99102 2169 aa2.06□□□□□ -2.08
USP53-205ENST00000509769 OTOGQ6ZRI0 2925 aa2.06□□□□□ -2.08
USP53-205ENST00000509769 LCE2AQ5TA79 106 aaPredicted RBP2.06□□□□□ -2.08
USP53-205ENST00000509769 FBN1P35555 2871 aaKnown RBP2.06□□□□□ -2.08
USP53-205ENST00000509769 PRUNE2Q8WUY3 3088 aa2.05□□□□□ -2.08
USP53-205ENST00000509769 PLCE1Q9P212 2302 aa2.04□□□□□ -2.08
USP53-205ENST00000509769 EYSQ5T1H1 3165 aa2.04□□□□□ -2.08
USP53-205ENST00000509769 C10orf95Q9H7T3 257 aa2.04□□□□□ -2.08
USP53-205ENST00000509769 BPTFQ12830 3046 aa2.04□□□□□ -2.08
USP53-205ENST00000509769 STAB1Q9NY15 2570 aa2.04□□□□□ -2.08
USP53-205ENST00000509769 A0A0C4DFX4 3053 aa2.04□□□□□ -2.08
USP53-205ENST00000509769 NF1P21359 2839 aa2.03□□□□□ -2.08
USP53-205ENST00000509769 PRO2289Q9P1D8 64 aa2.03□□□□□ -2.08
USP53-205ENST00000509769 ITPR2Q14571 2701 aa2.03□□□□□ -2.08
USP53-205ENST00000509769 DNHD1Q96M86 4753 aa2.03□□□□□ -2.08
USP53-205ENST00000509769 KRTAP10-3P60369 221 aa2.03□□□□□ -2.08
USP53-205ENST00000509769 KRTAP10-11P60412 298 aa2.03□□□□□ -2.08
USP53-205ENST00000509769 ACANP16112 2415 aa2.02□□□□□ -2.09
USP53-205ENST00000509769 COL6A5A8TX70 2615 aa2.02□□□□□ -2.09
USP53-205ENST00000509769 DYNC2H1Q8NCM8 4307 aaKnown RBP2.02□□□□□ -2.09
USP53-205ENST00000509769 MKI67P46013 3256 aaKnown RBP2.02□□□□□ -2.09
USP53-205ENST00000509769 KRTAP9-6A0A140TA67 174 aa2.02□□□□□ -2.09
USP53-205ENST00000509769 ZFHX4Q86UP3 3567 aa2.01□□□□□ -2.09
USP53-205ENST00000509769 DMXL1Q9Y485 3027 aa2.01□□□□□ -2.09
USP53-205ENST00000509769 APCP25054 2843 aa2.01□□□□□ -2.09
USP53-205ENST00000509769 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP2.01□□□□□ -2.09
USP53-205ENST00000509769 NBPF19A0A087WUL8 3843 aa2.01□□□□□ -2.09
USP53-205ENST00000509769 NSD1Q96L73 2696 aaPredicted RBP2.01□□□□□ -2.09
USP53-205ENST00000509769 ROS1P08922 2347 aa2.01□□□□□ -2.09
USP53-205ENST00000509769 LAMA3Q16787 3333 aa2□□□□□ -2.09
USP53-205ENST00000509769 WNK1Q9H4A3 2382 aa2□□□□□ -2.09
USP53-205ENST00000509769 CENPFP49454 3210 aa2□□□□□ -2.09
USP53-205ENST00000509769 RYR3Q15413 4870 aa2□□□□□ -2.09
USP53-205ENST00000509769 ANK2Q01484 3957 aa2□□□□□ -2.09
USP53-205ENST00000509769 FLNAP21333 2647 aaKnown RBP2□□□□□ -2.09
USP53-205ENST00000509769 USP34Q70CQ2 3546 aa1.99□□□□□ -2.09
USP53-205ENST00000509769 A8MU10 97 aa1.99□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 98.6 ms