RNA–Protein interactions for RNA: ENST00000509552.5

CCHCR1-228, Transcript of coiled-coil alpha-helical rod protein 1, humanhuman

TSL 1 (best)

Gene CCHCR1, Length 2,304 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1-228ENST00000509552 A0A0G2JQZ4 141 aa11.23□□□□□ -0.61
CCHCR1-228ENST00000509552 COL7A1Q02388 2944 aa11.22□□□□□ -0.61
CCHCR1-228ENST00000509552 C9orf163Q8N9P6 203 aa11.22□□□□□ -0.61
CCHCR1-228ENST00000509552 DNAH9Q9NYC9 4486 aa11.22□□□□□ -0.61
CCHCR1-228ENST00000509552 H0Y9J4 135 aa11.21□□□□□ -0.61
CCHCR1-228ENST00000509552 NBDYA0A0U1RRE5 68 aa11.19□□□□□ -0.62
CCHCR1-228ENST00000509552 A0A087WSZ3 146 aa11.19□□□□□ -0.62
CCHCR1-228ENST00000509552 KRTAP11-1Q8IUC1 163 aa11.19□□□□□ -0.62
CCHCR1-228ENST00000509552 LINC00474Q9P2X8 69 aa11.19□□□□□ -0.62
CCHCR1-228ENST00000509552 DYNC2H1Q8NCM8 4307 aaKnown RBP11.19□□□□□ -0.62
CCHCR1-228ENST00000509552 LRCOL1A6NCL2 159 aa11.18□□□□□ -0.62
CCHCR1-228ENST00000509552 Q5XG85 94 aa11.18□□□□□ -0.62
CCHCR1-228ENST00000509552 NUPR2A6NF83 97 aa11.17□□□□□ -0.62
CCHCR1-228ENST00000509552 HCG22E2RYF7 251 aa11.17□□□□□ -0.62
CCHCR1-228ENST00000509552 SPRR1BP22528 89 aa11.17□□□□□ -0.62
CCHCR1-228ENST00000509552 MDFIQ99750 246 aa11.15□□□□□ -0.62
CCHCR1-228ENST00000509552 C4orf26Q17RF5 130 aa11.14□□□□□ -0.63
CCHCR1-228ENST00000509552 C5orf47Q569G3 176 aa11.14□□□□□ -0.63
CCHCR1-228ENST00000509552 LCE6AA0A183 80 aa11.14□□□□□ -0.63
CCHCR1-228ENST00000509552 DEFB116Q30KQ4 102 aa11.14□□□□□ -0.63
CCHCR1-228ENST00000509552 SMIM26A0A096LP01 95 aa11.11□□□□□ -0.63
CCHCR1-228ENST00000509552 Q6ZRN7 208 aaPredicted RBP11.1□□□□□ -0.63
CCHCR1-228ENST00000509552 DNAH7Q8WXX0 4024 aa11.09□□□□□ -0.63
CCHCR1-228ENST00000509552 TENM2Q9NT68 2774 aa11.09□□□□□ -0.63
CCHCR1-228ENST00000509552 HRCT1Q6UXD1 115 aa11.08□□□□□ -0.64
CCHCR1-228ENST00000509552 CSMD3Q7Z407 3707 aa11.07□□□□□ -0.64
CCHCR1-228ENST00000509552 PLECQ15149 4684 aaKnown RBP11.07□□□□□ -0.64
CCHCR1-228ENST00000509552 PANO1I0J062 215 aa11.07□□□□□ -0.64
CCHCR1-228ENST00000509552 WFDC13Q8IUB5 93 aa11.06□□□□□ -0.64
CCHCR1-228ENST00000509552 RPL37AP61513 92 aaKnown RBP11.05□□□□□ -0.64
CCHCR1-228ENST00000509552 KRTAP13-1Q8IUC0 172 aa11.04□□□□□ -0.64
CCHCR1-228ENST00000509552 SPACA4Q8TDM5 124 aa11.03□□□□□ -0.64
CCHCR1-228ENST00000509552 ZCCHC13Q8WW36 166 aaKnown RBP11.03□□□□□ -0.64
CCHCR1-228ENST00000509552 SRRM2Q9UQ35 2752 aaKnown RBP11.01□□□□□ -0.65
CCHCR1-228ENST00000509552 FP248Q71RG6 208 aaPredicted RBP11.01□□□□□ -0.65
CCHCR1-228ENST00000509552 LINC00472Q9H8W2 130 aa11.01□□□□□ -0.65
CCHCR1-228ENST00000509552 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.01□□□□□ -0.65
CCHCR1-228ENST00000509552 PRR15Q8IV56 129 aa11□□□□□ -0.65
CCHCR1-228ENST00000509552 A8MWP4 228 aa11□□□□□ -0.65
CCHCR1-228ENST00000509552 A0A087WTM6 91 aa10.98□□□□□ -0.65
CCHCR1-228ENST00000509552 KRTAP29-1A8MX34 341 aaPredicted RBP10.98□□□□□ -0.65
CCHCR1-228ENST00000509552 MP68P56378 58 aa10.98□□□□□ -0.65
CCHCR1-228ENST00000509552 CASC2Q6XLA1 102 aa10.98□□□□□ -0.65
CCHCR1-228ENST00000509552 NDUFB1O75438 58 aa10.94□□□□□ -0.66
CCHCR1-228ENST00000509552 IGLV9-49A0A0B4J1Y8 123 aa10.93□□□□□ -0.66
CCHCR1-228ENST00000509552 FAM229BQ4G0N7 80 aa10.93□□□□□ -0.66
CCHCR1-228ENST00000509552 VPS13DQ5THJ4 4388 aa10.92□□□□□ -0.66
CCHCR1-228ENST00000509552 RTL8CO15255 209 aa10.92□□□□□ -0.66
CCHCR1-228ENST00000509552 ZNF706Q9Y5V0 76 aaPredicted RBP10.92□□□□□ -0.66
CCHCR1-228ENST00000509552 LINC00483Q53H64 154 aa10.9□□□□□ -0.66
CCHCR1-228ENST00000509552 LINC00208Q96KT6 92 aa10.89□□□□□ -0.67
CCHCR1-228ENST00000509552 STARD9Q9P2P6 4700 aa10.89□□□□□ -0.67
CCHCR1-228ENST00000509552 hDV103S1A0JD37 113 aa10.89□□□□□ -0.67
CCHCR1-228ENST00000509552 TRAV22A0A0B4J277 110 aa10.87□□□□□ -0.67
CCHCR1-228ENST00000509552 H0Y9P7 68 aa10.87□□□□□ -0.67
CCHCR1-228ENST00000509552 H3BPC8 53 aa10.87□□□□□ -0.67
CCHCR1-228ENST00000509552 MPLKIPQ8TAP9 179 aa10.87□□□□□ -0.67
CCHCR1-228ENST00000509552 PSORS1C2Q9UIG4 136 aa10.87□□□□□ -0.67
CCHCR1-228ENST00000509552 IGLV5-52A0A0A0MRZ9 124 aa10.86□□□□□ -0.67
CCHCR1-228ENST00000509552 C1orf64Q8NEQ6 169 aa10.86□□□□□ -0.67
CCHCR1-228ENST00000509552 CYP4F30PQ9H0H9 118 aa10.86□□□□□ -0.67
CCHCR1-228ENST00000509552 Q6ZR54 194 aa10.85□□□□□ -0.67
CCHCR1-228ENST00000509552 MMP24-AS1A0A0U1RRL7 71 aa10.85□□□□□ -0.67
CCHCR1-228ENST00000509552 PLAC8Q9NZF1 115 aa10.85□□□□□ -0.67
CCHCR1-228ENST00000509552 HECTD4Q9Y4D8 3996 aa10.82□□□□□ -0.68
CCHCR1-228ENST00000509552 ZNF861PO60384 105 aa10.82□□□□□ -0.68
CCHCR1-228ENST00000509552 PRR4Q16378 134 aa10.82□□□□□ -0.68
CCHCR1-228ENST00000509552 Q96NJ1 140 aa10.82□□□□□ -0.68
CCHCR1-228ENST00000509552 LINC00336Q6ZUF6 198 aa10.81□□□□□ -0.68
CCHCR1-228ENST00000509552 WWC2-AS2Q96NR7 200 aa10.81□□□□□ -0.68
CCHCR1-228ENST00000509552 PRKDCP78527 4128 aaKnown RBP10.81□□□□□ -0.68
CCHCR1-228ENST00000509552 MOBPQ13875 183 aa10.8□□□□□ -0.68
CCHCR1-228ENST00000509552 C1orf134Q5TEV5 83 aa10.78□□□□□ -0.68
CCHCR1-228ENST00000509552 SPANXA2-OT1Q8N9U9 137 aa10.76□□□□□ -0.69
CCHCR1-228ENST00000509552 ANAPC11Q9NYG5 84 aa10.75□□□□□ -0.69
CCHCR1-228ENST00000509552 CDK2AP2O75956 126 aa10.75□□□□□ -0.69
CCHCR1-228ENST00000509552 PRO0628Q9UI54 55 aa10.75□□□□□ -0.69
CCHCR1-228ENST00000509552 DNAH17Q9UFH2 4485 aa10.74□□□□□ -0.69
CCHCR1-228ENST00000509552 TP53AIP1Q9HCN2 124 aa10.74□□□□□ -0.69
CCHCR1-228ENST00000509552 C8orf17Q9NRJ1 99 aa10.74□□□□□ -0.69
CCHCR1-228ENST00000509552 DNAH2Q9P225 4427 aa10.74□□□□□ -0.69
CCHCR1-228ENST00000509552 ASB16-AS1Q495Z4 193 aa10.73□□□□□ -0.69
CCHCR1-228ENST00000509552 KMT2AQ03164 3969 aa10.72□□□□□ -0.69
CCHCR1-228ENST00000509552 A0A1B0GVX0 72 aa10.72□□□□□ -0.69
CCHCR1-228ENST00000509552 IGHV6-1A0A0B4J1U7 121 aa10.72□□□□□ -0.69
CCHCR1-228ENST00000509552 Q1T7F1 81 aa10.72□□□□□ -0.69
CCHCR1-228ENST00000509552 IGLV7-43P04211 117 aa10.69□□□□□ -0.7
CCHCR1-228ENST00000509552 DNAH8Q96JB1 4490 aa10.69□□□□□ -0.7
CCHCR1-228ENST00000509552 LY6G6CO95867 125 aa10.68□□□□□ -0.7
CCHCR1-228ENST00000509552 MEGF8Q7Z7M0 2845 aa10.67□□□□□ -0.7
CCHCR1-228ENST00000509552 BRK1Q8WUW1 75 aa10.67□□□□□ -0.7
CCHCR1-228ENST00000509552 NDUFS5O43920 106 aa10.66□□□□□ -0.7
CCHCR1-228ENST00000509552 FRAS1Q86XX4 4008 aa10.65□□□□□ -0.7
CCHCR1-228ENST00000509552 MRPL34Q9BQ48 92 aaKnown RBP10.64□□□□□ -0.71
CCHCR1-228ENST00000509552 FBN3Q75N90 2809 aa10.62□□□□□ -0.71
CCHCR1-228ENST00000509552 TGP01266 2768 aa10.62□□□□□ -0.71
CCHCR1-228ENST00000509552 V9GYY9 64 aa10.62□□□□□ -0.71
CCHCR1-228ENST00000509552 IGLV7-46A0A075B6I9 117 aa10.61□□□□□ -0.71
CCHCR1-228ENST00000509552 CIRBP-AS1Q8TBR5 109 aa10.61□□□□□ -0.71
CCHCR1-228ENST00000509552 CD164Q04900 197 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 78.5 ms