RNA–Protein interactions for RNA: ENST00000506098.5

NUP54-204, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-204ENST00000506098 S100A7L2Q5SY68 101 aa4.51□□□□□ -1.69
NUP54-204ENST00000506098 SCXQ7RTU7 201 aa4.51□□□□□ -1.69
NUP54-204ENST00000506098 C7orf33Q8WU49 177 aa4.51□□□□□ -1.69
NUP54-204ENST00000506098 LINC00167Q96N53 147 aa4.51□□□□□ -1.69
NUP54-204ENST00000506098 IGLV1-50A0A075B6I6 118 aa4.5□□□□□ -1.69
NUP54-204ENST00000506098 NCR3O14931 201 aa4.5□□□□□ -1.69
NUP54-204ENST00000506098 PHF5AQ7RTV0 110 aaKnown RBP4.5□□□□□ -1.69
NUP54-204ENST00000506098 VPS13BQ7Z7G8 4022 aa4.49□□□□□ -1.69
NUP54-204ENST00000506098 H7BZZ5 65 aa4.49□□□□□ -1.69
NUP54-204ENST00000506098 CDK2AP2O75956 126 aa4.49□□□□□ -1.69
NUP54-204ENST00000506098 KCNQ1DNQ9H478 68 aa4.49□□□□□ -1.69
NUP54-204ENST00000506098 FAM229AH3BQW9 127 aa4.48□□□□□ -1.69
NUP54-204ENST00000506098 LST1O00453 97 aa4.48□□□□□ -1.69
NUP54-204ENST00000506098 KRTAP11-1Q8IUC1 163 aa4.48□□□□□ -1.69
NUP54-204ENST00000506098 CYSTM1Q9H1C7 97 aa4.48□□□□□ -1.69
NUP54-204ENST00000506098 TRAV7A0A075B6U4 112 aa4.47□□□□□ -1.69
NUP54-204ENST00000506098 RPL37AP8A6NKH3 93 aa4.47□□□□□ -1.69
NUP54-204ENST00000506098 PRYO14603 147 aa4.47□□□□□ -1.69
NUP54-204ENST00000506098 SPRR1AP35321 89 aa4.47□□□□□ -1.69
NUP54-204ENST00000506098 HSPG2P98160 4391 aa4.46□□□□□ -1.69
NUP54-204ENST00000506098 EPPK1P58107 5090 aaKnown RBP4.46□□□□□ -1.69
NUP54-204ENST00000506098 TRAV23DV6A0A075B6W5 121 aa4.46□□□□□ -1.7
NUP54-204ENST00000506098 KRTAP4-16G5E9R7 235 aaPredicted RBP4.46□□□□□ -1.7
NUP54-204ENST00000506098 ERC2-IT1O76042 136 aa4.46□□□□□ -1.7
NUP54-204ENST00000506098 RPL28P46779 137 aaKnown RBP4.46□□□□□ -1.7
NUP54-204ENST00000506098 UBE2BP63146 152 aa4.46□□□□□ -1.7
NUP54-204ENST00000506098 HAMPP81172 84 aa4.46□□□□□ -1.7
NUP54-204ENST00000506098 Q1T7F1 81 aa4.46□□□□□ -1.7
NUP54-204ENST00000506098 Q6ZVQ6 151 aa4.46□□□□□ -1.7
NUP54-204ENST00000506098 PRR26Q8N8Z3 221 aa4.46□□□□□ -1.7
NUP54-204ENST00000506098 SMIM11BQ8TCY0 68 aa4.46□□□□□ -1.7
NUP54-204ENST00000506098 C8orf87E5RJ46 101 aa4.45□□□□□ -1.7
NUP54-204ENST00000506098 REG3GQ6UW15 175 aa4.45□□□□□ -1.7
NUP54-204ENST00000506098 SMCR5Q8TEV8 140 aa4.45□□□□□ -1.7
NUP54-204ENST00000506098 PSORS1C2Q9UIG4 136 aa4.45□□□□□ -1.7
NUP54-204ENST00000506098 PKHD1L1Q86WI1 4243 aa4.45□□□□□ -1.7
NUP54-204ENST00000506098 H0Y9J4 135 aa4.44□□□□□ -1.7
NUP54-204ENST00000506098 ZNF73O43830 326 aaPredicted RBP4.44□□□□□ -1.7
NUP54-204ENST00000506098 RBM3P98179 157 aaKnown RBP4.44□□□□□ -1.7
NUP54-204ENST00000506098 C6orf99Q4VX62 202 aa4.43□□□□□ -1.7
NUP54-204ENST00000506098 LCA10Q71F78 164 aa4.43□□□□□ -1.7
NUP54-204ENST00000506098 DIRC1Q969H9 104 aa4.43□□□□□ -1.7
NUP54-204ENST00000506098 H7C2G1 150 aa4.42□□□□□ -1.7
NUP54-204ENST00000506098 SMR3BP02814 79 aaPredicted RBP4.42□□□□□ -1.7
NUP54-204ENST00000506098 ELOF1P60002 83 aaKnown RBP4.42□□□□□ -1.7
NUP54-204ENST00000506098 KRTAP10-4P60372 401 aaPredicted RBP4.42□□□□□ -1.7
NUP54-204ENST00000506098 KRTAP13-1Q8IUC0 172 aa4.42□□□□□ -1.7
NUP54-204ENST00000506098 ETDCA0A1B0GVM5 59 aa4.41□□□□□ -1.7
NUP54-204ENST00000506098 H0YGX0 51 aa4.41□□□□□ -1.7
NUP54-204ENST00000506098 TRIAP1O43715 76 aa4.41□□□□□ -1.7
NUP54-204ENST00000506098 IGLV7-43P04211 117 aa4.41□□□□□ -1.7
NUP54-204ENST00000506098 CXCL6P80162 114 aa4.41□□□□□ -1.7
NUP54-204ENST00000506098 Q1RN00 199 aa4.41□□□□□ -1.7
NUP54-204ENST00000506098 C1orf137Q5JT78 98 aa4.41□□□□□ -1.7
NUP54-204ENST00000506098 ATP11AUNQ6ZP68 121 aa4.41□□□□□ -1.7
NUP54-204ENST00000506098 Q6ZRX8 168 aa4.41□□□□□ -1.7
NUP54-204ENST00000506098 A0A087X002 238 aa4.4□□□□□ -1.71
NUP54-204ENST00000506098 ZNF861PO60384 105 aa4.4□□□□□ -1.71
NUP54-204ENST00000506098 COX7BP24311 80 aa4.4□□□□□ -1.71
NUP54-204ENST00000506098 RPL37AP61513 92 aaKnown RBP4.4□□□□□ -1.71
NUP54-204ENST00000506098 C20orf197Q8N268 126 aa4.4□□□□□ -1.71
NUP54-204ENST00000506098 RYR1P21817 5038 aa4.4□□□□□ -1.71
NUP54-204ENST00000506098 FAT1Q14517 4588 aa4.39□□□□□ -1.71
NUP54-204ENST00000506098 LINC00575Q6W349 94 aa4.39□□□□□ -1.71
NUP54-204ENST00000506098 Q8N1X5 172 aa4.39□□□□□ -1.71
NUP54-204ENST00000506098 Q9BRP9 147 aa4.39□□□□□ -1.71
NUP54-204ENST00000506098 KRTAP17-1Q9BYP8 105 aa4.39□□□□□ -1.71
NUP54-204ENST00000506098 DHRS4-AS1Q9P1J3 65 aa4.39□□□□□ -1.71
NUP54-204ENST00000506098 SRRM2Q9UQ35 2752 aaKnown RBP4.39□□□□□ -1.71
NUP54-204ENST00000506098 TMEM256-PLSCR3K7ERE1 68 aa4.38□□□□□ -1.71
NUP54-204ENST00000506098 DNAL4O96015 105 aa4.38□□□□□ -1.71
NUP54-204ENST00000506098 PLA2G1BP04054 148 aaKnown RBP4.38□□□□□ -1.71
NUP54-204ENST00000506098 UBE2AP49459 152 aa4.38□□□□□ -1.71
NUP54-204ENST00000506098 PRLHP81277 87 aa4.38□□□□□ -1.71
NUP54-204ENST00000506098 C7orf65Q6ZTY9 151 aa4.38□□□□□ -1.71
NUP54-204ENST00000506098 KIAA1109Q2LD37 5005 aa4.37□□□□□ -1.71
NUP54-204ENST00000506098 ASB16-AS1Q495Z4 193 aa4.37□□□□□ -1.71
NUP54-204ENST00000506098 OBSCN-AS1Q96MR7 158 aa4.37□□□□□ -1.71
NUP54-204ENST00000506098 FAM218AQ96MZ4 157 aa4.37□□□□□ -1.71
NUP54-204ENST00000506098 Q5VSD8 79 aa4.36□□□□□ -1.71
NUP54-204ENST00000506098 SPINK6Q6UWN8 80 aa4.36□□□□□ -1.71
NUP54-204ENST00000506098 CLEC2BQ92478 149 aa4.36□□□□□ -1.71
NUP54-204ENST00000506098 A8MUN3 132 aa4.35□□□□□ -1.71
NUP54-204ENST00000506098 F8WEM9 126 aa4.35□□□□□ -1.71
NUP54-204ENST00000506098 HIGD2AQ9BW72 106 aa4.35□□□□□ -1.71
NUP54-204ENST00000506098 BIRC6Q9NR09 4857 aa4.34□□□□□ -1.71
NUP54-204ENST00000506098 LINC01547P58512 204 aaPredicted RBP4.34□□□□□ -1.71
NUP54-204ENST00000506098 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP4.34□□□□□ -1.71
NUP54-204ENST00000506098 CYP4F30PQ9H0H9 118 aa4.34□□□□□ -1.71
NUP54-204ENST00000506098 IGLV5-48A0A075B6I7 105 aa4.33□□□□□ -1.72
NUP54-204ENST00000506098 SPRR1BP22528 89 aa4.33□□□□□ -1.72
NUP54-204ENST00000506098 Q6ZQY7 126 aa4.33□□□□□ -1.72
NUP54-204ENST00000506098 A6NN06 94 aa4.32□□□□□ -1.72
NUP54-204ENST00000506098 H3BQ85 93 aa4.32□□□□□ -1.72
NUP54-204ENST00000506098 BAALC-AS2P0C853 105 aa4.32□□□□□ -1.72
NUP54-204ENST00000506098 LINC00483Q53H64 154 aa4.32□□□□□ -1.72
NUP54-204ENST00000506098 NOTCH2NLQ7Z3S9 236 aa4.32□□□□□ -1.72
NUP54-204ENST00000506098 ST20-AS1Q8NBB2 130 aa4.32□□□□□ -1.72
NUP54-204ENST00000506098 SPRR4Q96PI1 79 aa4.32□□□□□ -1.72
NUP54-204ENST00000506098 ZNF706Q9Y5V0 76 aaPredicted RBP4.32□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 78.9 ms