RNA–Protein interactions for RNA: ENST00000496296.5

FGFR1-223, Transcript of fibroblast growth factor receptor 1, human

TSL 1 (best)

Gene FGFR1, Length 1,898 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
FGFR1-223	ENST00000496296	ST20-AS1	Q8NBB2	130 aa		13.23	□□□□□ -0.29
FGFR1-223	ENST00000496296	SMIM20	Q8N5G0	67 aa		13.23	□□□□□ -0.29
FGFR1-223	ENST00000496296	DNAH2	Q9P225	4427 aa		13.22	□□□□□ -0.29
FGFR1-223	ENST00000496296	TMEM258	P61165	79 aa		13.2	□□□□□ -0.3
FGFR1-223	ENST00000496296	CYSTM1	Q9H1C7	97 aa		13.19	□□□□□ -0.3
FGFR1-223	ENST00000496296	EPM2A	B3EWF7	344 aa		13.18	□□□□□ -0.3
FGFR1-223	ENST00000496296		H0Y9J4	135 aa		13.18	□□□□□ -0.3
FGFR1-223	ENST00000496296	SMIM29	Q86T20	159 aa		13.18	□□□□□ -0.3
FGFR1-223	ENST00000496296	TRAV7	A0A075B6U4	112 aa		13.17	□□□□□ -0.3
FGFR1-223	ENST00000496296	KRTAP10-2	P60368	255 aa		13.17	□□□□□ -0.3
FGFR1-223	ENST00000496296	FRAS1	Q86XX4	4008 aa		13.17	□□□□□ -0.3
FGFR1-223	ENST00000496296	C1orf137	Q5JT78	98 aa		13.16	□□□□□ -0.3
FGFR1-223	ENST00000496296		A0A1W2PNM2	257 aa		13.16	□□□□□ -0.3
FGFR1-223	ENST00000496296	SPRR4	Q96PI1	79 aa		13.16	□□□□□ -0.3
FGFR1-223	ENST00000496296		Q8NBF4	154 aa		13.15	□□□□□ -0.3
FGFR1-223	ENST00000496296	NREP	Q16612	68 aa		13.14	□□□□□ -0.31
FGFR1-223	ENST00000496296	RPS28	P62857	69 aa	Known RBP	13.13	□□□□□ -0.31
FGFR1-223	ENST00000496296	PLAC8	Q9NZF1	115 aa		13.13	□□□□□ -0.31
FGFR1-223	ENST00000496296	IGLV8-61	A0A075B6I0	122 aa		13.12	□□□□□ -0.31
FGFR1-223	ENST00000496296	LINC00336	Q6ZUF6	198 aa		13.12	□□□□□ -0.31
FGFR1-223	ENST00000496296	KRTAP11-1	Q8IUC1	163 aa		13.1	□□□□□ -0.31
FGFR1-223	ENST00000496296	DNAH17	Q9UFH2	4485 aa		13.1	□□□□□ -0.31
FGFR1-223	ENST00000496296	PRLH	P81277	87 aa		13.1	□□□□□ -0.31
FGFR1-223	ENST00000496296		J3KT08	172 aa		13.09	□□□□□ -0.31
FGFR1-223	ENST00000496296	SPRR1B	P22528	89 aa		13.08	□□□□□ -0.32
FGFR1-223	ENST00000496296	SCX	Q7RTU7	201 aa		13.08	□□□□□ -0.32
FGFR1-223	ENST00000496296	EPPK1	P58107	5090 aa	Known RBP	13.07	□□□□□ -0.32
FGFR1-223	ENST00000496296		F8WEM9	126 aa		13.06	□□□□□ -0.32
FGFR1-223	ENST00000496296	IGKV4-1	P06312	121 aa		13.06	□□□□□ -0.32
FGFR1-223	ENST00000496296	UBE2A	P49459	152 aa		13.06	□□□□□ -0.32
FGFR1-223	ENST00000496296	FAT2	Q9NYQ8	4349 aa		13.05	□□□□□ -0.32
FGFR1-223	ENST00000496296	BPY2	O14599	106 aa		13.05	□□□□□ -0.32
FGFR1-223	ENST00000496296	C20orf197	Q8N268	126 aa		13.05	□□□□□ -0.32
FGFR1-223	ENST00000496296	HIGD2A	Q9BW72	106 aa		13.04	□□□□□ -0.32
FGFR1-223	ENST00000496296	KLKP1	Q107X0	134 aa		13.03	□□□□□ -0.32
FGFR1-223	ENST00000496296	KRTAP10-1	P60331	282 aa		13.01	□□□□□ -0.33
FGFR1-223	ENST00000496296	IGFL1	Q6UW32	110 aa		13.01	□□□□□ -0.33
FGFR1-223	ENST00000496296	KRTAP13-1	Q8IUC0	172 aa		13.01	□□□□□ -0.33
FGFR1-223	ENST00000496296	HECTD4	Q9Y4D8	3996 aa		13.01	□□□□□ -0.33
FGFR1-223	ENST00000496296	FAM30A	Q9NZY2	134 aa		13	□□□□□ -0.33
FGFR1-223	ENST00000496296		Q6ZSA8	131 aa		12.99	□□□□□ -0.33
FGFR1-223	ENST00000496296	SVIP	Q8NHG7	77 aa		12.99	□□□□□ -0.33
FGFR1-223	ENST00000496296	CIRBP-AS1	Q8TBR5	109 aa		12.98	□□□□□ -0.33
FGFR1-223	ENST00000496296	PSORS1C2	Q9UIG4	136 aa		12.97	□□□□□ -0.33
FGFR1-223	ENST00000496296		Q8N9L7	120 aa		12.95	□□□□□ -0.34
FGFR1-223	ENST00000496296		H7BZZ5	65 aa		12.94	□□□□□ -0.34
FGFR1-223	ENST00000496296	DNAH11	Q96DT5	4516 aa		12.92	□□□□□ -0.34
FGFR1-223	ENST00000496296	NDUFC1	O43677	76 aa		12.91	□□□□□ -0.34
FGFR1-223	ENST00000496296	PKD1	P98161	4303 aa		12.91	□□□□□ -0.34
FGFR1-223	ENST00000496296	DSCR10	P59022	87 aa		12.9	□□□□□ -0.34
FGFR1-223	ENST00000496296	FAM236D	A0A1B0GTK5	79 aa		12.89	□□□□□ -0.35
FGFR1-223	ENST00000496296	FAM236C	P0DP71	79 aa		12.89	□□□□□ -0.35
FGFR1-223	ENST00000496296	OCR1	Q9BZK8	76 aa		12.89	□□□□□ -0.35
FGFR1-223	ENST00000496296		A0A1B0GVY2	172 aa		12.88	□□□□□ -0.35
FGFR1-223	ENST00000496296	PKHD1	P08F94	4074 aa		12.86	□□□□□ -0.35
FGFR1-223	ENST00000496296	ZNF861P	O60384	105 aa		12.86	□□□□□ -0.35
FGFR1-223	ENST00000496296		A0A0G2JQZ4	141 aa		12.85	□□□□□ -0.35
FGFR1-223	ENST00000496296	SNURF	Q9Y675	71 aa		12.85	□□□□□ -0.35
FGFR1-223	ENST00000496296	IGLV7-43	P04211	117 aa		12.83	□□□□□ -0.36
FGFR1-223	ENST00000496296	TMEM254	Q8TBM7	123 aa		12.83	□□□□□ -0.36
FGFR1-223	ENST00000496296	ZNF706	Q9Y5V0	76 aa	Predicted RBP	12.82	□□□□□ -0.36
FGFR1-223	ENST00000496296	DNAH5	Q8TE73	4624 aa		12.82	□□□□□ -0.36
FGFR1-223	ENST00000496296	OXT	P01178	125 aa		12.82	□□□□□ -0.36
FGFR1-223	ENST00000496296	LINC00483	Q53H64	154 aa		12.82	□□□□□ -0.36
FGFR1-223	ENST00000496296		A0A087WSZ3	146 aa		12.81	□□□□□ -0.36
FGFR1-223	ENST00000496296	BIRC6	Q9NR09	4857 aa		12.8	□□□□□ -0.36
FGFR1-223	ENST00000496296	SERP1	Q9Y6X1	66 aa		12.79	□□□□□ -0.36
FGFR1-223	ENST00000496296		K7EQZ3	153 aa		12.78	□□□□□ -0.36
FGFR1-223	ENST00000496296	ATP5E	P56381	51 aa	Predicted RBP	12.78	□□□□□ -0.36
FGFR1-223	ENST00000496296	RPL37A	P61513	92 aa	Known RBP	12.78	□□□□□ -0.36
FGFR1-223	ENST00000496296		A0A0U1RQV1	116 aa		12.77	□□□□□ -0.37
FGFR1-223	ENST00000496296	LINC00472	Q9H8W2	130 aa		12.72	□□□□□ -0.37
FGFR1-223	ENST00000496296	DNAH8	Q96JB1	4490 aa		12.72	□□□□□ -0.37
FGFR1-223	ENST00000496296	HCG22	E2RYF7	251 aa		12.72	□□□□□ -0.37
FGFR1-223	ENST00000496296	DYNC1H1	Q14204	4646 aa	Known RBP	12.7	□□□□□ -0.38
FGFR1-223	ENST00000496296	LRP1B	Q9NZR2	4599 aa		12.66	□□□□□ -0.38
FGFR1-223	ENST00000496296	SRRM2	Q9UQ35	2752 aa	Known RBP	12.66	□□□□□ -0.38
FGFR1-223	ENST00000496296	DEFB116	Q30KQ4	102 aa		12.64	□□□□□ -0.39
FGFR1-223	ENST00000496296		Q5XG85	94 aa		12.64	□□□□□ -0.39
FGFR1-223	ENST00000496296	IGLV9-49	A0A0B4J1Y8	123 aa		12.63	□□□□□ -0.39
FGFR1-223	ENST00000496296		A8MWP4	228 aa		12.63	□□□□□ -0.39
FGFR1-223	ENST00000496296	PRR15	Q8IV56	129 aa		12.63	□□□□□ -0.39
FGFR1-223	ENST00000496296	KRTAP29-1	A8MX34	341 aa	Predicted RBP	12.63	□□□□□ -0.39
FGFR1-223	ENST00000496296	C5orf47	Q569G3	176 aa		12.6	□□□□□ -0.39
FGFR1-223	ENST00000496296	ANAPC11	Q9NYG5	84 aa		12.59	□□□□□ -0.39
FGFR1-223	ENST00000496296	ZCCHC13	Q8WW36	166 aa	Known RBP	12.58	□□□□□ -0.4
FGFR1-223	ENST00000496296	KIAA1109	Q2LD37	5005 aa		12.58	□□□□□ -0.4
FGFR1-223	ENST00000496296	SMIM26	A0A096LP01	95 aa		12.57	□□□□□ -0.4
FGFR1-223	ENST00000496296		Q96NJ1	140 aa		12.57	□□□□□ -0.4
FGFR1-223	ENST00000496296	SMR3B	P02814	79 aa	Predicted RBP	12.56	□□□□□ -0.4
FGFR1-223	ENST00000496296	MOBP	Q13875	183 aa		12.55	□□□□□ -0.4
FGFR1-223	ENST00000496296	APOB	P04114	4563 aa	Known RBP	12.53	□□□□□ -0.4
FGFR1-223	ENST00000496296	WFDC13	Q8IUB5	93 aa		12.53	□□□□□ -0.4
FGFR1-223	ENST00000496296	C4orf26	Q17RF5	130 aa		12.51	□□□□□ -0.41
FGFR1-223	ENST00000496296	SPINK6	Q6UWN8	80 aa		12.51	□□□□□ -0.41
FGFR1-223	ENST00000496296	CASC2	Q6XLA1	102 aa		12.51	□□□□□ -0.41
FGFR1-223	ENST00000496296	FAM229B	Q4G0N7	80 aa		12.49	□□□□□ -0.41
FGFR1-223	ENST00000496296	MMP24-AS1	A0A0U1RRL7	71 aa		12.48	□□□□□ -0.41
FGFR1-223	ENST00000496296	NDUFB1	O75438	58 aa		12.48	□□□□□ -0.41
FGFR1-223	ENST00000496296	ASB16-AS1	Q495Z4	193 aa		12.46	□□□□□ -0.41

Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms