RNA–Protein interactions for RNA: ENST00000496047.5

USP39-219, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 554 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-219ENST00000496047 C1orf134Q5TEV5 83 aa4.41□□□□□ -1.7
USP39-219ENST00000496047 COL7A1Q02388 2944 aa4.4□□□□□ -1.7
USP39-219ENST00000496047 IGLV5-48A0A075B6I7 105 aa4.4□□□□□ -1.71
USP39-219ENST00000496047 KRTAP4-16G5E9R7 235 aaPredicted RBP4.4□□□□□ -1.71
USP39-219ENST00000496047 HIST1H4AP62805 103 aaKnown RBP4.4□□□□□ -1.71
USP39-219ENST00000496047 Q6ZRN7 208 aaPredicted RBP4.4□□□□□ -1.71
USP39-219ENST00000496047 UBR4Q5T4S7 5183 aa4.39□□□□□ -1.71
USP39-219ENST00000496047 A0A087WTM6 91 aa4.39□□□□□ -1.71
USP39-219ENST00000496047 IGKV3D-7A0A0C4DH55 119 aa4.39□□□□□ -1.71
USP39-219ENST00000496047 H0Y9J4 135 aa4.39□□□□□ -1.71
USP39-219ENST00000496047 RTL8CO15255 209 aa4.39□□□□□ -1.71
USP39-219ENST00000496047 LY6G6CO95867 125 aa4.39□□□□□ -1.71
USP39-219ENST00000496047 LINC00476Q8WZB0 136 aa4.39□□□□□ -1.71
USP39-219ENST00000496047 SACSQ9NZJ4 4579 aa4.38□□□□□ -1.71
USP39-219ENST00000496047 IGLV5-52A0A0A0MRZ9 124 aa4.38□□□□□ -1.71
USP39-219ENST00000496047 A0A1W2PNN7 141 aa4.38□□□□□ -1.71
USP39-219ENST00000496047 C3orf84H3BNL1 204 aa4.38□□□□□ -1.71
USP39-219ENST00000496047 CXCL6P80162 114 aa4.38□□□□□ -1.71
USP39-219ENST00000496047 HAMPP81172 84 aa4.38□□□□□ -1.71
USP39-219ENST00000496047 PHF5AQ7RTV0 110 aaKnown RBP4.38□□□□□ -1.71
USP39-219ENST00000496047 Q8N377 158 aa4.38□□□□□ -1.71
USP39-219ENST00000496047 Q9BRP9 147 aa4.38□□□□□ -1.71
USP39-219ENST00000496047 HIGD2AQ9BW72 106 aa4.38□□□□□ -1.71
USP39-219ENST00000496047 DNAH9Q9NYC9 4486 aa4.38□□□□□ -1.71
USP39-219ENST00000496047 CHTF8P0CG12 524 aa4.37□□□□□ -1.71
USP39-219ENST00000496047 PRLHP81277 87 aa4.37□□□□□ -1.71
USP39-219ENST00000496047 NREPQ16612 68 aa4.37□□□□□ -1.71
USP39-219ENST00000496047 C1orf137Q5JT78 98 aa4.37□□□□□ -1.71
USP39-219ENST00000496047 Q6ZR54 194 aa4.37□□□□□ -1.71
USP39-219ENST00000496047 Q6ZVQ6 151 aa4.37□□□□□ -1.71
USP39-219ENST00000496047 KRTAP7-1Q8IUC3 87 aa4.37□□□□□ -1.71
USP39-219ENST00000496047 SPACA4Q8TDM5 124 aa4.37□□□□□ -1.71
USP39-219ENST00000496047 ZNF706Q9Y5V0 76 aaPredicted RBP4.37□□□□□ -1.71
USP39-219ENST00000496047 BCE1O60756 84 aa4.36□□□□□ -1.71
USP39-219ENST00000496047 SMIM20Q8N5G0 67 aa4.36□□□□□ -1.71
USP39-219ENST00000496047 STAB2Q8WWQ8 2551 aa4.35□□□□□ -1.71
USP39-219ENST00000496047 LCE6AA0A183 80 aa4.35□□□□□ -1.71
USP39-219ENST00000496047 LINC01547P58512 204 aaPredicted RBP4.35□□□□□ -1.71
USP39-219ENST00000496047 Q8NBF4 154 aa4.35□□□□□ -1.71
USP39-219ENST00000496047 EPM2AB3EWF7 344 aa4.34□□□□□ -1.71
USP39-219ENST00000496047 BPY2O14599 106 aa4.34□□□□□ -1.71
USP39-219ENST00000496047 ST20-AS1Q8NBB2 130 aa4.34□□□□□ -1.71
USP39-219ENST00000496047 UQCRQO14949 82 aa4.33□□□□□ -1.72
USP39-219ENST00000496047 ERC2-IT1O76042 136 aa4.32□□□□□ -1.72
USP39-219ENST00000496047 COX7CP15954 63 aa4.32□□□□□ -1.72
USP39-219ENST00000496047 SPRR1BP22528 89 aa4.32□□□□□ -1.72
USP39-219ENST00000496047 C9orf153Q5TBE3 101 aa4.32□□□□□ -1.72
USP39-219ENST00000496047 C3orf22Q8N5N4 141 aa4.32□□□□□ -1.72
USP39-219ENST00000496047 IGLV8-61A0A075B6I0 122 aa4.31□□□□□ -1.72
USP39-219ENST00000496047 SERP2Q8N6R1 65 aa4.31□□□□□ -1.72
USP39-219ENST00000496047 SPRR4Q96PI1 79 aa4.31□□□□□ -1.72
USP39-219ENST00000496047 PLAC8Q9NZF1 115 aa4.31□□□□□ -1.72
USP39-219ENST00000496047 A0A087WVE0 104 aa4.3□□□□□ -1.72
USP39-219ENST00000496047 RPL37AP61513 92 aaKnown RBP4.3□□□□□ -1.72
USP39-219ENST00000496047 CRYGAP11844 174 aa4.29□□□□□ -1.72
USP39-219ENST00000496047 IGFL1Q6UW32 110 aa4.29□□□□□ -1.72
USP39-219ENST00000496047 A0A1W2PNM2 257 aa4.28□□□□□ -1.72
USP39-219ENST00000496047 CCDC179H3BU77 68 aa4.28□□□□□ -1.72
USP39-219ENST00000496047 SCXQ7RTU7 201 aa4.28□□□□□ -1.72
USP39-219ENST00000496047 SMIM29Q86T20 159 aa4.28□□□□□ -1.72
USP39-219ENST00000496047 SS18L2Q9UHA2 77 aa4.28□□□□□ -1.72
USP39-219ENST00000496047 TRAV7A0A075B6U4 112 aa4.27□□□□□ -1.73
USP39-219ENST00000496047 PANO1I0J062 215 aa4.27□□□□□ -1.73
USP39-219ENST00000496047 ZNF861PO60384 105 aa4.27□□□□□ -1.73
USP39-219ENST00000496047 KRTAP13-1Q8IUC0 172 aa4.27□□□□□ -1.73
USP39-219ENST00000496047 DNAH7Q8WXX0 4024 aa4.27□□□□□ -1.73
USP39-219ENST00000496047 PSORS1C2Q9UIG4 136 aa4.26□□□□□ -1.73
USP39-219ENST00000496047 A0A087WSZ3 146 aa4.25□□□□□ -1.73
USP39-219ENST00000496047 IGLV9-49A0A0B4J1Y8 123 aa4.25□□□□□ -1.73
USP39-219ENST00000496047 J3KT08 172 aa4.25□□□□□ -1.73
USP39-219ENST00000496047 IGKV4-1P06312 121 aa4.25□□□□□ -1.73
USP39-219ENST00000496047 LINC00483Q53H64 154 aa4.25□□□□□ -1.73
USP39-219ENST00000496047 KRTAP11-1Q8IUC1 163 aa4.25□□□□□ -1.73
USP39-219ENST00000496047 Q8N1X5 172 aa4.25□□□□□ -1.73
USP39-219ENST00000496047 DNAH6Q9C0G6 4158 aa4.24□□□□□ -1.73
USP39-219ENST00000496047 LYSTQ99698 3801 aa4.24□□□□□ -1.73
USP39-219ENST00000496047 IGLV7-43P04211 117 aa4.24□□□□□ -1.73
USP39-219ENST00000496047 LINC00336Q6ZUF6 198 aa4.24□□□□□ -1.73
USP39-219ENST00000496047 KIAA1109Q2LD37 5005 aa4.24□□□□□ -1.73
USP39-219ENST00000496047 STARD9Q9P2P6 4700 aa4.23□□□□□ -1.73
USP39-219ENST00000496047 CSMD3Q7Z407 3707 aa4.23□□□□□ -1.73
USP39-219ENST00000496047 NDUFB1O75438 58 aa4.23□□□□□ -1.73
USP39-219ENST00000496047 PLECQ15149 4684 aaKnown RBP4.22□□□□□ -1.73
USP39-219ENST00000496047 ALMS1Q8TCU4 4167 aa4.22□□□□□ -1.73
USP39-219ENST00000496047 CDK2AP2O75956 126 aa4.22□□□□□ -1.73
USP39-219ENST00000496047 TMEM258P61165 79 aa4.22□□□□□ -1.73
USP39-219ENST00000496047 VPS13DQ5THJ4 4388 aa4.22□□□□□ -1.73
USP39-219ENST00000496047 ABCA13Q86UQ4 5058 aa4.22□□□□□ -1.73
USP39-219ENST00000496047 HCG22E2RYF7 251 aa4.21□□□□□ -1.74
USP39-219ENST00000496047 NDUFC1O43677 76 aa4.21□□□□□ -1.74
USP39-219ENST00000496047 MOBPQ13875 183 aa4.21□□□□□ -1.74
USP39-219ENST00000496047 HERC1Q15751 4861 aa4.21□□□□□ -1.74
USP39-219ENST00000496047 K7EQZ3 153 aa4.2□□□□□ -1.74
USP39-219ENST00000496047 C20orf197Q8N268 126 aa4.2□□□□□ -1.74
USP39-219ENST00000496047 Q8N9L7 120 aa4.2□□□□□ -1.74
USP39-219ENST00000496047 CIRBP-AS1Q8TBR5 109 aa4.2□□□□□ -1.74
USP39-219ENST00000496047 DNAH10Q8IVF4 4471 aa4.2□□□□□ -1.74
USP39-219ENST00000496047 DSCR10P59022 87 aa4.19□□□□□ -1.74
USP39-219ENST00000496047 Q6ZSA8 131 aa4.19□□□□□ -1.74
USP39-219ENST00000496047 SSBP3-AS1Q7Z2R9 100 aa4.19□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms