RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 F8WEM9 126 aa13.58□□□□□ -0.24
UPF3A-209ENST00000492270 A0A0B4J2C4 111 aa13.57□□□□□ -0.24
UPF3A-209ENST00000492270 PYY3Q5JQD4 70 aa13.57□□□□□ -0.24
UPF3A-209ENST00000492270 Q5XG85 94 aa13.57□□□□□ -0.24
UPF3A-209ENST00000492270 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP13.56□□□□□ -0.24
UPF3A-209ENST00000492270 CEND1Q8N111 149 aa13.55□□□□□ -0.24
UPF3A-209ENST00000492270 TMA7Q9Y2S6 64 aaKnown RBP13.55□□□□□ -0.24
UPF3A-209ENST00000492270 C9orf92A6NGG3 77 aa13.54□□□□□ -0.24
UPF3A-209ENST00000492270 SEC61BP60468 96 aaKnown RBP13.54□□□□□ -0.24
UPF3A-209ENST00000492270 KRTAP4-1Q9BYQ7 146 aa13.54□□□□□ -0.24
UPF3A-209ENST00000492270 FAT4Q6V0I7 4981 aa13.53□□□□□ -0.24
UPF3A-209ENST00000492270 C1orf195Q5TG92 126 aa13.53□□□□□ -0.24
UPF3A-209ENST00000492270 IGLV8-61A0A075B6I0 122 aa13.51□□□□□ -0.25
UPF3A-209ENST00000492270 FXYD2P54710 66 aa13.51□□□□□ -0.25
UPF3A-209ENST00000492270 IGFL1Q6UW32 110 aa13.5□□□□□ -0.25
UPF3A-209ENST00000492270 FAM218AQ96MZ4 157 aa13.5□□□□□ -0.25
UPF3A-209ENST00000492270 OCIAD2Q56VL3 154 aa13.48□□□□□ -0.25
UPF3A-209ENST00000492270 Q6JHZ5 121 aa13.48□□□□□ -0.25
UPF3A-209ENST00000492270 PPDPFLQ8WWR9 84 aa13.47□□□□□ -0.25
UPF3A-209ENST00000492270 CLEC2BQ92478 149 aa13.47□□□□□ -0.25
UPF3A-209ENST00000492270 TMEM238LA0A1B0GVL6 79 aa13.46□□□□□ -0.25
UPF3A-209ENST00000492270 A6NJY4 79 aa13.46□□□□□ -0.25
UPF3A-209ENST00000492270 LCE2AQ5TA79 106 aaPredicted RBP13.46□□□□□ -0.25
UPF3A-209ENST00000492270 PRO1854Q9UHT4 67 aa13.46□□□□□ -0.25
UPF3A-209ENST00000492270 H0YGX0 51 aa13.45□□□□□ -0.26
UPF3A-209ENST00000492270 SNHG12Q9BXW3 62 aa13.45□□□□□ -0.26
UPF3A-209ENST00000492270 TCL1BO95988 128 aa13.44□□□□□ -0.26
UPF3A-209ENST00000492270 H3BUT2 72 aa13.43□□□□□ -0.26
UPF3A-209ENST00000492270 TRBV7-7A0A0K0K1E9 115 aa13.41□□□□□ -0.26
UPF3A-209ENST00000492270 HSD52Q0P140 79 aa13.4□□□□□ -0.26
UPF3A-209ENST00000492270 TRIAP1O43715 76 aa13.39□□□□□ -0.27
UPF3A-209ENST00000492270 K7ERJ3 54 aa13.37□□□□□ -0.27
UPF3A-209ENST00000492270 SNCGO76070 127 aa13.37□□□□□ -0.27
UPF3A-209ENST00000492270 PCOTHQ58A44 107 aa13.36□□□□□ -0.27
UPF3A-209ENST00000492270 NDUFV3P56181 108 aaKnown RBP13.33□□□□□ -0.28
UPF3A-209ENST00000492270 A0A1B0GX51 115 aa13.32□□□□□ -0.28
UPF3A-209ENST00000492270 UQCR10Q9UDW1 63 aa13.32□□□□□ -0.28
UPF3A-209ENST00000492270 FABP2P12104 132 aa13.28□□□□□ -0.28
UPF3A-209ENST00000492270 PSMB2P49721 201 aa13.26□□□□□ -0.29
UPF3A-209ENST00000492270 Q6Q795 121 aa13.25□□□□□ -0.29
UPF3A-209ENST00000492270 H3BMG7 143 aa13.24□□□□□ -0.29
UPF3A-209ENST00000492270 RPL37P61927 97 aaKnown RBP13.23□□□□□ -0.29
UPF3A-209ENST00000492270 TEN1Q86WV5 123 aa13.22□□□□□ -0.29
UPF3A-209ENST00000492270 LST1O00453 97 aa13.21□□□□□ -0.29
UPF3A-209ENST00000492270 GHRHP01286 108 aa13.21□□□□□ -0.29
UPF3A-209ENST00000492270 DNAL4O96015 105 aa13.2□□□□□ -0.3
UPF3A-209ENST00000492270 ORMDL1Q9P0S3 153 aa13.18□□□□□ -0.3
UPF3A-209ENST00000492270 SS18L2Q9UHA2 77 aa13.18□□□□□ -0.3
UPF3A-209ENST00000492270 A0A087WSZ3 146 aa13.17□□□□□ -0.3
UPF3A-209ENST00000492270 A0A1B0GV72 72 aa13.17□□□□□ -0.3
UPF3A-209ENST00000492270 COX6CP09669 75 aa13.17□□□□□ -0.3
UPF3A-209ENST00000492270 KRTAP19-2Q3LHN2 52 aa13.15□□□□□ -0.3
UPF3A-209ENST00000492270 A0A1W2PNM2 257 aa13.14□□□□□ -0.31
UPF3A-209ENST00000492270 LCE2CQ5TA81 110 aa13.14□□□□□ -0.31
UPF3A-209ENST00000492270 OBSCN-AS1Q96MR7 158 aa13.14□□□□□ -0.31
UPF3A-209ENST00000492270 Q96NJ1 140 aa13.1□□□□□ -0.31
UPF3A-209ENST00000492270 TMEM256-PLSCR3K7ERE1 68 aa13.08□□□□□ -0.32
UPF3A-209ENST00000492270 H3BQ85 93 aa13.07□□□□□ -0.32
UPF3A-209ENST00000492270 ANKRD29Q8N6D5 301 aa13.07□□□□□ -0.32
UPF3A-209ENST00000492270 SCGB1C2P0DMR2 95 aa13.06□□□□□ -0.32
UPF3A-209ENST00000492270 KRTAP9-2Q9BYQ4 174 aa13.05□□□□□ -0.32
UPF3A-209ENST00000492270 TRACP01848 142 aa13.04□□□□□ -0.32
UPF3A-209ENST00000492270 Q75L30 129 aa13.02□□□□□ -0.33
UPF3A-209ENST00000492270 TRBV7-4A0A0J9YYF1 115 aa13.01□□□□□ -0.33
UPF3A-209ENST00000492270 UBE2V1Q13404 147 aa13.01□□□□□ -0.33
UPF3A-209ENST00000492270 SMIM6P0DI80 62 aa12.99□□□□□ -0.33
UPF3A-209ENST00000492270 CCKP06307 115 aa12.97□□□□□ -0.33
UPF3A-209ENST00000492270 SIGMAR1Q99720 223 aa12.97□□□□□ -0.33
UPF3A-209ENST00000492270 NAA38Q9BRA0 125 aaKnown RBP12.97□□□□□ -0.33
UPF3A-209ENST00000492270 M0R143 59 aa12.96□□□□□ -0.33
UPF3A-209ENST00000492270 MT1HP80294 61 aa12.96□□□□□ -0.33
UPF3A-209ENST00000492270 ATP11AUNQ6ZP68 121 aa12.95□□□□□ -0.34
UPF3A-209ENST00000492270 DSCR10P59022 87 aa12.94□□□□□ -0.34
UPF3A-209ENST00000492270 C20orf166-AS1Q96NR2 134 aa12.92□□□□□ -0.34
UPF3A-209ENST00000492270 IGKV4-1P06312 121 aa12.91□□□□□ -0.34
UPF3A-209ENST00000492270 A8MUU9 505 aa12.9□□□□□ -0.34
UPF3A-209ENST00000492270 BAALC-AS2P0C853 105 aa12.9□□□□□ -0.34
UPF3A-209ENST00000492270 DEFB116Q30KQ4 102 aa12.9□□□□□ -0.34
UPF3A-209ENST00000492270 VPS25Q9BRG1 176 aa12.9□□□□□ -0.34
UPF3A-209ENST00000492270 RBM3P98179 157 aaKnown RBP12.89□□□□□ -0.35
UPF3A-209ENST00000492270 LINC00472Q9H8W2 130 aa12.88□□□□□ -0.35
UPF3A-209ENST00000492270 DSCR8Q96T75 97 aa12.85□□□□□ -0.35
UPF3A-209ENST00000492270 ATXN8Q156A1 80 aa12.84□□□□□ -0.35
UPF3A-209ENST00000492270 COX6B2Q6YFQ2 88 aa12.84□□□□□ -0.35
UPF3A-209ENST00000492270 KRTAP16-1A8MUX0 517 aa12.81□□□□□ -0.36
UPF3A-209ENST00000492270 TSTD3H0UI37 97 aa12.81□□□□□ -0.36
UPF3A-209ENST00000492270 LINC00313P59037 77 aa12.81□□□□□ -0.36
UPF3A-209ENST00000492270 NOTCH2NLQ7Z3S9 236 aa12.81□□□□□ -0.36
UPF3A-209ENST00000492270 FLGP20930 4061 aaPredicted RBP12.8□□□□□ -0.36
UPF3A-209ENST00000492270 LOC105371267A0A1B0GV96 52 aa12.79□□□□□ -0.36
UPF3A-209ENST00000492270 BATFQ16520 125 aa12.79□□□□□ -0.36
UPF3A-209ENST00000492270 C9JAW5 83 aa12.78□□□□□ -0.36
UPF3A-209ENST00000492270 IGHV6-1A0A0B4J1U7 121 aa12.75□□□□□ -0.37
UPF3A-209ENST00000492270 Q6ZQT0 140 aa12.71□□□□□ -0.37
UPF3A-209ENST00000492270 JMJD7-PLA2G4BH0Y9G9 81 aa12.7□□□□□ -0.38
UPF3A-209ENST00000492270 M0R2T5 61 aa12.69□□□□□ -0.38
UPF3A-209ENST00000492270 KRTAP10-6P60371 365 aaPredicted RBP12.69□□□□□ -0.38
UPF3A-209ENST00000492270 LYRM7Q5U5X0 104 aa12.69□□□□□ -0.38
UPF3A-209ENST00000492270 A0A1B0GVX0 72 aa12.68□□□□□ -0.38
UPF3A-209ENST00000492270 LORP23490 312 aaPredicted RBP12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms