RNA–Protein interactions for RNA: ENST00000490193.5

USP39-216, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 1,028 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-216ENST00000490193 KRTAP15-1Q3LI76 137 aa4.33□□□□□ -1.72
USP39-216ENST00000490193 S100A7L2Q5SY68 101 aa4.33□□□□□ -1.72
USP39-216ENST00000490193 IFI27L1Q96BM0 104 aa4.33□□□□□ -1.72
USP39-216ENST00000490193 ANAPC13Q9BS18 74 aa4.33□□□□□ -1.72
USP39-216ENST00000490193 SYNE2Q8WXH0 6885 aaKnown RBP4.32□□□□□ -1.72
USP39-216ENST00000490193 TSPEAR-AS2P59090 65 aa4.32□□□□□ -1.72
USP39-216ENST00000490193 HRCT1Q6UXD1 115 aa4.32□□□□□ -1.72
USP39-216ENST00000490193 GTF2H5Q6ZYL4 71 aa4.32□□□□□ -1.72
USP39-216ENST00000490193 TRAPPC1Q9Y5R8 145 aa4.32□□□□□ -1.72
USP39-216ENST00000490193 FCGBPQ9Y6R7 5405 aaPredicted RBP4.32□□□□□ -1.72
USP39-216ENST00000490193 A0A1B0GX51 115 aa4.31□□□□□ -1.72
USP39-216ENST00000490193 RPS28P62857 69 aaKnown RBP4.31□□□□□ -1.72
USP39-216ENST00000490193 RPS10P5Q9NQ39 176 aa4.31□□□□□ -1.72
USP39-216ENST00000490193 SPANXCQ9NY87 97 aa4.31□□□□□ -1.72
USP39-216ENST00000490193 LAMTOR3Q9UHA4 124 aa4.31□□□□□ -1.72
USP39-216ENST00000490193 LEPROTO15243 131 aa4.3□□□□□ -1.72
USP39-216ENST00000490193 CFC1P0CG37 223 aa4.3□□□□□ -1.72
USP39-216ENST00000490193 HINT1P49773 126 aaPredicted RBP4.3□□□□□ -1.72
USP39-216ENST00000490193 CHCHD1Q96BP2 118 aaKnown RBP4.3□□□□□ -1.72
USP39-216ENST00000490193 DHRS4-AS1Q9P1J3 65 aa4.3□□□□□ -1.72
USP39-216ENST00000490193 C9JAW5 83 aa4.29□□□□□ -1.72
USP39-216ENST00000490193 J3QQQ9 107 aa4.29□□□□□ -1.72
USP39-216ENST00000490193 FABP4P15090 132 aa4.29□□□□□ -1.72
USP39-216ENST00000490193 NMUP48645 174 aa4.29□□□□□ -1.72
USP39-216ENST00000490193 SOSTDC1Q6X4U4 206 aa4.29□□□□□ -1.72
USP39-216ENST00000490193 NAA38Q9BRA0 125 aaKnown RBP4.29□□□□□ -1.72
USP39-216ENST00000490193 A0A0A0MQY5 61 aa4.28□□□□□ -1.72
USP39-216ENST00000490193 H7C2G1 150 aa4.28□□□□□ -1.72
USP39-216ENST00000490193 MACF1Q9UPN3 7388 aaKnown RBP4.28□□□□□ -1.72
USP39-216ENST00000490193 SMIM29Q86T20 159 aa4.27□□□□□ -1.73
USP39-216ENST00000490193 HIST1H2BLQ99880 126 aa4.27□□□□□ -1.73
USP39-216ENST00000490193 FAM236DA0A1B0GTK5 79 aa4.26□□□□□ -1.73
USP39-216ENST00000490193 J3QR89 54 aa4.26□□□□□ -1.73
USP39-216ENST00000490193 FAM236CP0DP71 79 aa4.26□□□□□ -1.73
USP39-216ENST00000490193 PLNP26678 52 aa4.26□□□□□ -1.73
USP39-216ENST00000490193 ELOF1P60002 83 aaKnown RBP4.26□□□□□ -1.73
USP39-216ENST00000490193 Q1RN00 199 aa4.26□□□□□ -1.73
USP39-216ENST00000490193 TEX49A0A1B0GTD5 131 aa4.25□□□□□ -1.73
USP39-216ENST00000490193 LGALS3P17931 250 aaKnown RBP4.25□□□□□ -1.73
USP39-216ENST00000490193 ADAMTSL4-AS1Q5T5F5 129 aa4.25□□□□□ -1.73
USP39-216ENST00000490193 A0A0J9YXY3 114 aa4.24□□□□□ -1.73
USP39-216ENST00000490193 CCDC179H3BU77 68 aa4.24□□□□□ -1.73
USP39-216ENST00000490193 HERVK_113P61574 105 aa4.24□□□□□ -1.73
USP39-216ENST00000490193 NPC2P61916 151 aa4.24□□□□□ -1.73
USP39-216ENST00000490193 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.24□□□□□ -1.73
USP39-216ENST00000490193 SPANXDQ9BXN6 97 aa4.24□□□□□ -1.73
USP39-216ENST00000490193 IGLV5-48A0A075B6I7 105 aa4.23□□□□□ -1.73
USP39-216ENST00000490193 DPM2O94777 84 aa4.23□□□□□ -1.73
USP39-216ENST00000490193 COX7BP24311 80 aa4.23□□□□□ -1.73
USP39-216ENST00000490193 VAMP8Q9BV40 100 aa4.23□□□□□ -1.73
USP39-216ENST00000490193 LEPROTL1O95214 131 aa4.22□□□□□ -1.73
USP39-216ENST00000490193 TCL1BO95988 128 aa4.22□□□□□ -1.73
USP39-216ENST00000490193 C6orf99Q4VX62 202 aa4.22□□□□□ -1.73
USP39-216ENST00000490193 Q6Q795 121 aa4.22□□□□□ -1.73
USP39-216ENST00000490193 DEFB105AQ8NG35 78 aa4.22□□□□□ -1.73
USP39-216ENST00000490193 LINC00308Q8TCZ7 52 aa4.22□□□□□ -1.73
USP39-216ENST00000490193 LITAFQ99732 161 aa4.22□□□□□ -1.73
USP39-216ENST00000490193 TRBV7-6A0A0J9YX20 115 aa4.21□□□□□ -1.74
USP39-216ENST00000490193 HIST1H2BKO60814 126 aa4.21□□□□□ -1.74
USP39-216ENST00000490193 IGKCP01834 107 aa4.21□□□□□ -1.74
USP39-216ENST00000490193 HIST1H2BJP06899 126 aa4.21□□□□□ -1.74
USP39-216ENST00000490193 HIST1H2BOP23527 126 aa4.21□□□□□ -1.74
USP39-216ENST00000490193 HIST1H2BBP33778 126 aa4.21□□□□□ -1.74
USP39-216ENST00000490193 HIST1H2BDP58876 126 aa4.21□□□□□ -1.74
USP39-216ENST00000490193 HIST1H2BCP62807 126 aa4.21□□□□□ -1.74
USP39-216ENST00000490193 HIST2H2BEQ16778 126 aa4.21□□□□□ -1.74
USP39-216ENST00000490193 HIST2H2BFQ5QNW6 126 aaPredicted RBP4.21□□□□□ -1.74
USP39-216ENST00000490193 Q75L30 129 aa4.21□□□□□ -1.74
USP39-216ENST00000490193 HIST1H2BHQ93079 126 aa4.21□□□□□ -1.74
USP39-216ENST00000490193 YPEL4Q96NS1 127 aa4.21□□□□□ -1.74
USP39-216ENST00000490193 HIST1H2BNQ99877 126 aa4.21□□□□□ -1.74
USP39-216ENST00000490193 HIST1H2BMQ99879 126 aa4.21□□□□□ -1.74
USP39-216ENST00000490193 A0A0G2JQZ4 141 aa4.2□□□□□ -1.74
USP39-216ENST00000490193 E9PLD3 99 aa4.2□□□□□ -1.74
USP39-216ENST00000490193 TIMM17BO60830 172 aa4.2□□□□□ -1.74
USP39-216ENST00000490193 PMAIP1Q13794 54 aa4.2□□□□□ -1.74
USP39-216ENST00000490193 ATP11AUNQ6ZP68 121 aa4.2□□□□□ -1.74
USP39-216ENST00000490193 Q6ZVH6 145 aa4.2□□□□□ -1.74
USP39-216ENST00000490193 UQCR10Q9UDW1 63 aa4.2□□□□□ -1.74
USP39-216ENST00000490193 TAX1BP3O14907 124 aa4.19□□□□□ -1.74
USP39-216ENST00000490193 PMCHL2Q9BQD1 86 aa4.19□□□□□ -1.74
USP39-216ENST00000490193 PAM16Q9Y3D7 125 aa4.19□□□□□ -1.74
USP39-216ENST00000490193 FAM240AA0A1B0GVK7 77 aa4.18□□□□□ -1.74
USP39-216ENST00000490193 A0A1B0GWB2 263 aa4.18□□□□□ -1.74
USP39-216ENST00000490193 MT2AP02795 61 aa4.18□□□□□ -1.74
USP39-216ENST00000490193 COA6Q5JTJ3 125 aaKnown RBP4.18□□□□□ -1.74
USP39-216ENST00000490193 SERF1AO75920 110 aa4.17□□□□□ -1.74
USP39-216ENST00000490193 NDUFV3P56181 108 aaKnown RBP4.17□□□□□ -1.74
USP39-216ENST00000490193 K7EP34 96 aa4.16□□□□□ -1.74
USP39-216ENST00000490193 PCP2Q8IVA1 136 aa4.16□□□□□ -1.74
USP39-216ENST00000490193 OBSCN-AS1Q96MR7 158 aa4.16□□□□□ -1.74
USP39-216ENST00000490193 A6NDN8 102 aa4.15□□□□□ -1.75
USP39-216ENST00000490193 MT1FP04733 61 aa4.15□□□□□ -1.75
USP39-216ENST00000490193 LYRM7Q5U5X0 104 aa4.15□□□□□ -1.75
USP39-216ENST00000490193 MT-ATP8P03928 68 aa4.14□□□□□ -1.75
USP39-216ENST00000490193 IFITM1P13164 125 aa4.14□□□□□ -1.75
USP39-216ENST00000490193 NHP2Q9NX24 153 aaKnown RBP4.14□□□□□ -1.75
USP39-216ENST00000490193 TRBV20-1A0A075B6N2 111 aa4.13□□□□□ -1.75
USP39-216ENST00000490193 TRBV7-7A0A0K0K1E9 115 aa4.13□□□□□ -1.75
USP39-216ENST00000490193 FAM236AA0A1B0GUQ0 79 aa4.13□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms