RNA–Protein interactions for RNA: ENST00000485749.1

RTN4-213, Transcript of reticulon 4, humanhuman

TSL 2

Gene RTN4, Length 832 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-213ENST00000485749 UNQ6190/PRO20217Q6UXQ8 127 aa2.34□□□□□ -2.03
RTN4-213ENST00000485749 ANKHD1Q8IWZ3 2542 aaKnown RBP2.34□□□□□ -2.04
RTN4-213ENST00000485749 EYSQ5T1H1 3165 aa2.34□□□□□ -2.04
RTN4-213ENST00000485749 WNK2Q9Y3S1 2297 aa2.34□□□□□ -2.04
RTN4-213ENST00000485749 FRYLO94915 3013 aa2.34□□□□□ -2.04
RTN4-213ENST00000485749 PRUNE2Q8WUY3 3088 aa2.33□□□□□ -2.04
RTN4-213ENST00000485749 ROS1P08922 2347 aa2.33□□□□□ -2.04
RTN4-213ENST00000485749 CACNA1BQ00975 2339 aa2.33□□□□□ -2.04
RTN4-213ENST00000485749 KRTAP5-2Q701N4 177 aa2.33□□□□□ -2.04
RTN4-213ENST00000485749 CRIPTQ9P021 101 aa2.33□□□□□ -2.04
RTN4-213ENST00000485749 COL6A3P12111 3177 aa2.33□□□□□ -2.04
RTN4-213ENST00000485749 NBEAQ8NFP9 2946 aa2.33□□□□□ -2.04
RTN4-213ENST00000485749 FRYQ5TBA9 3013 aa2.33□□□□□ -2.04
RTN4-213ENST00000485749 VPS13AQ96RL7 3174 aa2.32□□□□□ -2.04
RTN4-213ENST00000485749 IGLV5-48A0A075B6I7 105 aa2.32□□□□□ -2.04
RTN4-213ENST00000485749 SPART-AS1P0CW21 52 aa2.32□□□□□ -2.04
RTN4-213ENST00000485749 KRTAP12-2P59991 146 aa2.32□□□□□ -2.04
RTN4-213ENST00000485749 C6orf48Q9UBA6 75 aa2.32□□□□□ -2.04
RTN4-213ENST00000485749 TRIOBPQ9H2D6 2365 aa2.32□□□□□ -2.04
RTN4-213ENST00000485749 APC2O95996 2303 aa2.31□□□□□ -2.04
RTN4-213ENST00000485749 A0A096LPF7 62 aa2.31□□□□□ -2.04
RTN4-213ENST00000485749 KRTAP13-2Q52LG2 175 aa2.31□□□□□ -2.04
RTN4-213ENST00000485749 UBE2DNLQ8IWF7 75 aa2.31□□□□□ -2.04
RTN4-213ENST00000485749 OTOGLQ3ZCN5 2332 aa2.31□□□□□ -2.04
RTN4-213ENST00000485749 NCOR1O75376 2440 aa2.31□□□□□ -2.04
RTN4-213ENST00000485749 CELSR3Q9NYQ7 3312 aa2.3□□□□□ -2.04
RTN4-213ENST00000485749 DOPEY2Q9Y3R5 2298 aa2.3□□□□□ -2.04
RTN4-213ENST00000485749 H3BNG1 76 aa2.3□□□□□ -2.04
RTN4-213ENST00000485749 KRTAP10-8P60410 259 aa2.3□□□□□ -2.04
RTN4-213ENST00000485749 Q6ZRN7 208 aaPredicted RBP2.3□□□□□ -2.04
RTN4-213ENST00000485749 TNRC18O15417 2968 aaPredicted RBP2.29□□□□□ -2.04
RTN4-213ENST00000485749 MAP1BP46821 2468 aaKnown RBP2.29□□□□□ -2.04
RTN4-213ENST00000485749 RP1L1Q8IWN7 2480 aaPredicted RBP2.29□□□□□ -2.04
RTN4-213ENST00000485749 TPRP12270 2363 aaKnown RBP2.29□□□□□ -2.04
RTN4-213ENST00000485749 DEFB105AQ8NG35 78 aa2.29□□□□□ -2.04
RTN4-213ENST00000485749 CEP250Q9BV73 2442 aa2.29□□□□□ -2.04
RTN4-213ENST00000485749 SPTBN2O15020 2390 aa2.29□□□□□ -2.04
RTN4-213ENST00000485749 HTN3P15516 51 aa2.28□□□□□ -2.04
RTN4-213ENST00000485749 LCE3EQ5T5B0 92 aa2.28□□□□□ -2.04
RTN4-213ENST00000485749 TP53AIP1Q9HCN2 124 aa2.28□□□□□ -2.04
RTN4-213ENST00000485749 DCHS1Q96JQ0 3298 aa2.28□□□□□ -2.04
RTN4-213ENST00000485749 ATRXP46100 2492 aa2.28□□□□□ -2.04
RTN4-213ENST00000485749 CNOT1A5YKK6 2376 aaKnown RBP2.28□□□□□ -2.05
RTN4-213ENST00000485749 DEFB135Q30KP9 77 aa2.27□□□□□ -2.05
RTN4-213ENST00000485749 IGFL1Q6UW32 110 aa2.27□□□□□ -2.05
RTN4-213ENST00000485749 DSPP15924 2871 aaKnown RBP2.27□□□□□ -2.05
RTN4-213ENST00000485749 WDFY4Q6ZS81 3184 aa2.26□□□□□ -2.05
RTN4-213ENST00000485749 CFAP47Q6ZTR5 3102 aa2.26□□□□□ -2.05
RTN4-213ENST00000485749 MED13LQ71F56 2210 aa2.26□□□□□ -2.05
RTN4-213ENST00000485749 K7EQZ3 153 aa2.26□□□□□ -2.05
RTN4-213ENST00000485749 SPRR1AP35321 89 aa2.26□□□□□ -2.05
RTN4-213ENST00000485749 LOC400499M0QZD8 3231 aa2.25□□□□□ -2.05
RTN4-213ENST00000485749 ADGRG4Q8IZF6 3080 aa2.25□□□□□ -2.05
RTN4-213ENST00000485749 DEFB4AO15263 64 aa2.25□□□□□ -2.05
RTN4-213ENST00000485749 LINC01556Q5JQF7 62 aa2.25□□□□□ -2.05
RTN4-213ENST00000485749 COX6B2Q6YFQ2 88 aa2.25□□□□□ -2.05
RTN4-213ENST00000485749 ACACAQ13085 2346 aa2.25□□□□□ -2.05
RTN4-213ENST00000485749 SPENQ96T58 3664 aaKnown RBP2.25□□□□□ -2.05
RTN4-213ENST00000485749 PIEZO2Q9H5I5 2752 aa2.25□□□□□ -2.05
RTN4-213ENST00000485749 CACNA1HO95180 2353 aa2.24□□□□□ -2.05
RTN4-213ENST00000485749 ZFHX4Q86UP3 3567 aa2.24□□□□□ -2.05
RTN4-213ENST00000485749 PCNX1Q96RV3 2341 aa2.24□□□□□ -2.05
RTN4-213ENST00000485749 RPL37P61927 97 aaKnown RBP2.24□□□□□ -2.05
RTN4-213ENST00000485749 WFDC10BQ8IUB3 73 aa2.24□□□□□ -2.05
RTN4-213ENST00000485749 EP300Q09472 2414 aaPredicted RBP2.24□□□□□ -2.05
RTN4-213ENST00000485749 ABCA2Q9BZC7 2435 aa2.24□□□□□ -2.05
RTN4-213ENST00000485749 DMXL2Q8TDJ6 3036 aa2.24□□□□□ -2.05
RTN4-213ENST00000485749 KALRNO60229 2985 aa2.24□□□□□ -2.05
RTN4-213ENST00000485749 COL6A6A6NMZ7 2263 aa2.24□□□□□ -2.05
RTN4-213ENST00000485749 PTPRZ1P23471 2315 aaPredicted RBP2.23□□□□□ -2.05
RTN4-213ENST00000485749 WFDC13Q8IUB5 93 aa2.23□□□□□ -2.05
RTN4-213ENST00000485749 MRPL34Q9BQ48 92 aaKnown RBP2.23□□□□□ -2.05
RTN4-213ENST00000485749 PRRC2CQ9Y520 2896 aaKnown RBP2.23□□□□□ -2.05
RTN4-213ENST00000485749 ANKRD11Q6UB99 2663 aaPredicted RBP2.22□□□□□ -2.05
RTN4-213ENST00000485749 PTPRQQ9UMZ3 2332 aa2.22□□□□□ -2.05
RTN4-213ENST00000485749 PCOTHQ58A44 107 aa2.21□□□□□ -2.06
RTN4-213ENST00000485749 BOD1L1Q8NFC6 3051 aa2.21□□□□□ -2.06
RTN4-213ENST00000485749 SMG1Q96Q15 3661 aaKnown RBP2.21□□□□□ -2.06
RTN4-213ENST00000485749 SPTBN1Q01082 2364 aaKnown RBP2.21□□□□□ -2.06
RTN4-213ENST00000485749 DMDP11532 3685 aa2.2□□□□□ -2.06
RTN4-213ENST00000485749 SPTA1P02549 2419 aa2.2□□□□□ -2.06
RTN4-213ENST00000485749 TLN1Q9Y490 2541 aaKnown RBP2.2□□□□□ -2.06
RTN4-213ENST00000485749 SPRR1BP22528 89 aa2.2□□□□□ -2.06
RTN4-213ENST00000485749 BSNQ9UPA5 3926 aa2.2□□□□□ -2.06
RTN4-213ENST00000485749 MGAQ8IWI9 3026 aa2.2□□□□□ -2.06
RTN4-213ENST00000485749 HRNRQ86YZ3 2850 aaPredicted RBP2.2□□□□□ -2.06
RTN4-213ENST00000485749 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP2.19□□□□□ -2.062e-8■■■■■ 35
RTN4-213ENST00000485749 CREBBPQ92793 2442 aa2.19□□□□□ -2.06
RTN4-213ENST00000485749 ANKRD17O75179 2603 aaKnown RBP2.19□□□□□ -2.06
RTN4-213ENST00000485749 BDP1A6H8Y1 2624 aa2.18□□□□□ -2.06
RTN4-213ENST00000485749 SPTAN1Q13813 2472 aaKnown RBP2.17□□□□□ -2.06
RTN4-213ENST00000485749 CSMD1Q96PZ7 3565 aa2.17□□□□□ -2.06
RTN4-213ENST00000485749 AKAP6Q13023 2319 aa2.17□□□□□ -2.06
RTN4-213ENST00000485749 GVINP1Q7Z2Y8 2422 aa2.17□□□□□ -2.06
RTN4-213ENST00000485749 AKAP13Q12802 2813 aa2.17□□□□□ -2.06
RTN4-213ENST00000485749 TACC2O95359 2948 aa2.17□□□□□ -2.06
RTN4-213ENST00000485749 MMP24-AS1A0A0U1RRL7 71 aa2.17□□□□□ -2.06
RTN4-213ENST00000485749 PRLHP81277 87 aa2.17□□□□□ -2.06
RTN4-213ENST00000485749 KRTAP5-5Q701N2 237 aaPredicted RBP2.17□□□□□ -2.06
RTN4-213ENST00000485749 SORL1Q92673 2214 aa2.17□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 122.5 ms