RNA–Protein interactions for RNA: ENST00000479712.1

UPF3A-205, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-205ENST00000479712 CDKN2A-AS1Q9UH64 79 aa2.61□□□□□ -1.99
UPF3A-205ENST00000479712 MDN1Q9NU22 5596 aa2.61□□□□□ -1.99
UPF3A-205ENST00000479712 TRAV12-1A0A0B4J245 112 aa2.6□□□□□ -1.99
UPF3A-205ENST00000479712 P0C880 135 aa2.6□□□□□ -1.99
UPF3A-205ENST00000479712 C4orf26Q17RF5 130 aa2.6□□□□□ -1.99
UPF3A-205ENST00000479712 PP632Q6XCG6 107 aa2.6□□□□□ -1.99
UPF3A-205ENST00000479712 COX7B2Q8TF08 81 aa2.6□□□□□ -1.99
UPF3A-205ENST00000479712 TP73-AS1Q9UF72 201 aa2.6□□□□□ -1.99
UPF3A-205ENST00000479712 A0A1B0GU33 70 aa2.59□□□□□ -1.99
UPF3A-205ENST00000479712 C2orf82Q6UX34 121 aa2.59□□□□□ -1.99
UPF3A-205ENST00000479712 HIGD2AQ9BW72 106 aa2.59□□□□□ -1.99
UPF3A-205ENST00000479712 SPANXB1Q9NS25 103 aaPredicted RBP2.59□□□□□ -1.99
UPF3A-205ENST00000479712 LINC00846Q9NV44 126 aa2.59□□□□□ -1.99
UPF3A-205ENST00000479712 TOMM7Q9P0U1 55 aa2.59□□□□□ -1.99
UPF3A-205ENST00000479712 SLC25A20O43772 301 aa2.58□□□□□ -2
UPF3A-205ENST00000479712 NUPR1O60356 82 aa2.58□□□□□ -2
UPF3A-205ENST00000479712 ZNF22P17026 224 aaPredicted RBP2.58□□□□□ -2
UPF3A-205ENST00000479712 COX17Q14061 63 aa2.58□□□□□ -2
UPF3A-205ENST00000479712 KRTAP19-6Q3LI70 58 aa2.58□□□□□ -2
UPF3A-205ENST00000479712 SCGB1D4Q6XE38 83 aa2.58□□□□□ -2
UPF3A-205ENST00000479712 PSORS1C2Q9UIG4 136 aa2.58□□□□□ -2
UPF3A-205ENST00000479712 C11orf86A6NJI1 115 aa2.57□□□□□ -2
UPF3A-205ENST00000479712 SPINK8P0C7L1 97 aa2.57□□□□□ -2
UPF3A-205ENST00000479712 PHF5AQ7RTV0 110 aaKnown RBP2.57□□□□□ -2
UPF3A-205ENST00000479712 BAGE3Q86Y29 109 aa2.57□□□□□ -2
UPF3A-205ENST00000479712 DIRC1Q969H9 104 aa2.57□□□□□ -2
UPF3A-205ENST00000479712 IFI27L1Q96BM0 104 aa2.57□□□□□ -2
UPF3A-205ENST00000479712 LINC00587B1AMM8 73 aa2.56□□□□□ -2
UPF3A-205ENST00000479712 KRTAP5-8O75690 187 aa2.56□□□□□ -2
UPF3A-205ENST00000479712 TRGC2P03986 189 aa2.56□□□□□ -2
UPF3A-205ENST00000479712 NDUFA6P56556 154 aa2.56□□□□□ -2
UPF3A-205ENST00000479712 UBE2BP63146 152 aa2.56□□□□□ -2
UPF3A-205ENST00000479712 C1orf137Q5JT78 98 aa2.56□□□□□ -2
UPF3A-205ENST00000479712 FAM19A5Q7Z5A7 132 aaPredicted RBP2.56□□□□□ -2
UPF3A-205ENST00000479712 ZNF625Q96I27 306 aaPredicted RBP2.56□□□□□ -2
UPF3A-205ENST00000479712 C22orf24Q9Y442 160 aa2.56□□□□□ -2
UPF3A-205ENST00000479712 LEPROTL1O95214 131 aa2.55□□□□□ -2
UPF3A-205ENST00000479712 PLNP26678 52 aa2.55□□□□□ -2
UPF3A-205ENST00000479712 PMCHL1Q16048 86 aa2.55□□□□□ -2
UPF3A-205ENST00000479712 TMEM170BQ5T4T1 132 aa2.55□□□□□ -2
UPF3A-205ENST00000479712 RETNLBQ9BQ08 111 aa2.55□□□□□ -2
UPF3A-205ENST00000479712 XAGE1AQ9HD64 81 aa2.55□□□□□ -2
UPF3A-205ENST00000479712 HSPB8Q9UJY1 196 aa2.55□□□□□ -2
UPF3A-205ENST00000479712 ERG28Q9UKR5 140 aa2.55□□□□□ -2
UPF3A-205ENST00000479712 BCE1O60756 84 aa2.54□□□□□ -2
UPF3A-205ENST00000479712 RPL28P46779 137 aaKnown RBP2.54□□□□□ -2
UPF3A-205ENST00000479712 PLEKHB2Q96CS7 222 aa2.54□□□□□ -2
UPF3A-205ENST00000479712 IGKV2D-26A0A0A0MRZ7 120 aa2.53□□□□□ -2
UPF3A-205ENST00000479712 LOC107984156A0A0G2JMH3 177 aa2.53□□□□□ -2
UPF3A-205ENST00000479712 MYMXA0A1B0GTQ4 84 aa2.53□□□□□ -2
UPF3A-205ENST00000479712 LEPROTO15243 131 aa2.53□□□□□ -2
UPF3A-205ENST00000479712 DPM2O94777 84 aa2.53□□□□□ -2
UPF3A-205ENST00000479712 CTAG1AP78358 180 aa2.53□□□□□ -2
UPF3A-205ENST00000479712 KRTAP13-1Q8IUC0 172 aa2.53□□□□□ -2
UPF3A-205ENST00000479712 ARL17AQ8IVW1 177 aa2.53□□□□□ -2
UPF3A-205ENST00000479712 FAM19A2Q8N3H0 131 aa2.53□□□□□ -2
UPF3A-205ENST00000479712 A0A1W2PNM2 257 aa2.52□□□□□ -2.01
UPF3A-205ENST00000479712 M0R378 163 aa2.52□□□□□ -2.01
UPF3A-205ENST00000479712 HIST1H2BKO60814 126 aa2.52□□□□□ -2.01
UPF3A-205ENST00000479712 IGKCP01834 107 aa2.52□□□□□ -2.01
UPF3A-205ENST00000479712 HIST1H2BJP06899 126 aa2.52□□□□□ -2.01
UPF3A-205ENST00000479712 HIST1H2BOP23527 126 aa2.52□□□□□ -2.01
UPF3A-205ENST00000479712 HIST1H2BBP33778 126 aa2.52□□□□□ -2.01
UPF3A-205ENST00000479712 AKR1D1P51857 326 aa2.52□□□□□ -2.01
UPF3A-205ENST00000479712 LINC00158P58513 81 aa2.52□□□□□ -2.01
UPF3A-205ENST00000479712 HIST1H2BDP58876 126 aa2.52□□□□□ -2.01
UPF3A-205ENST00000479712 HIST1H2BCP62807 126 aa2.52□□□□□ -2.01
UPF3A-205ENST00000479712 HIST2H2BEQ16778 126 aa2.52□□□□□ -2.01
UPF3A-205ENST00000479712 FAM229BQ4G0N7 80 aa2.52□□□□□ -2.01
UPF3A-205ENST00000479712 HIST2H2BFQ5QNW6 126 aaPredicted RBP2.52□□□□□ -2.01
UPF3A-205ENST00000479712 HIST1H2BHQ93079 126 aa2.52□□□□□ -2.01
UPF3A-205ENST00000479712 HIST1H2BNQ99877 126 aa2.52□□□□□ -2.01
UPF3A-205ENST00000479712 HIST1H2BMQ99879 126 aa2.52□□□□□ -2.01
UPF3A-205ENST00000479712 NDUFA12Q9UI09 145 aa2.52□□□□□ -2.01
UPF3A-205ENST00000479712 TRBV10-2A0A0K0K1G8 114 aa2.51□□□□□ -2.01
UPF3A-205ENST00000479712 SYS1-DBNDD2H3BUS1 97 aa2.51□□□□□ -2.01
UPF3A-205ENST00000479712 J3QQQ9 107 aa2.51□□□□□ -2.01
UPF3A-205ENST00000479712 NDUFC2O95298 119 aa2.51□□□□□ -2.01
UPF3A-205ENST00000479712 LGALS3P17931 250 aaKnown RBP2.51□□□□□ -2.01
UPF3A-205ENST00000479712 ASB16-AS1Q495Z4 193 aa2.51□□□□□ -2.01
UPF3A-205ENST00000479712 MEIG1Q5JSS6 88 aa2.51□□□□□ -2.01
UPF3A-205ENST00000479712 LINC01545Q5VT33 79 aa2.51□□□□□ -2.01
UPF3A-205ENST00000479712 TMEM126AQ9H061 195 aa2.51□□□□□ -2.01
UPF3A-205ENST00000479712 AHNAK2Q8IVF2 5795 aa2.5□□□□□ -2.01
UPF3A-205ENST00000479712 TIMM17BO60830 172 aa2.5□□□□□ -2.01
UPF3A-205ENST00000479712 SMIM13P0DJ93 91 aa2.5□□□□□ -2.01
UPF3A-205ENST00000479712 FABP4P15090 132 aa2.5□□□□□ -2.01
UPF3A-205ENST00000479712 S100A1P23297 94 aa2.5□□□□□ -2.01
UPF3A-205ENST00000479712 SPRR1AP35321 89 aa2.5□□□□□ -2.01
UPF3A-205ENST00000479712 LINC00313P59037 77 aa2.5□□□□□ -2.01
UPF3A-205ENST00000479712 TSPEAR-AS2P59090 65 aa2.5□□□□□ -2.01
UPF3A-205ENST00000479712 TPRXLQ17RH7 258 aa2.5□□□□□ -2.01
UPF3A-205ENST00000479712 LCE1CQ5T751 118 aa2.5□□□□□ -2.01
UPF3A-205ENST00000479712 LCE1BQ5T7P3 118 aa2.5□□□□□ -2.01
UPF3A-205ENST00000479712 KCNQ1DNQ9H478 68 aa2.5□□□□□ -2.01
UPF3A-205ENST00000479712 S100A12P80511 92 aa2.49□□□□□ -2.01
UPF3A-205ENST00000479712 Q8NDZ9 215 aa2.49□□□□□ -2.01
UPF3A-205ENST00000479712 C20orf202A1L168 122 aa2.48□□□□□ -2.01
UPF3A-205ENST00000479712 C3orf79P0CE67 100 aa2.48□□□□□ -2.01
UPF3A-205ENST00000479712 PMCHL2Q9BQD1 86 aa2.48□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms