RNA–Protein interactions for RNA: ENST00000478423.6

NPHP4-208, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 4,467 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-208ENST00000478423 NIPBLQ6KC79 2804 aaeCLIP9.16□□□□□ -0.94
NPHP4-208ENST00000478423 MUC3AQ02505 3323 aa9.14□□□□□ -0.95
NPHP4-208ENST00000478423 ZFHX4Q86UP3 3567 aa9.13□□□□□ -0.95
NPHP4-208ENST00000478423 ANAPC11Q9NYG5 84 aa9.13□□□□□ -0.95
NPHP4-208ENST00000478423 KMT2BQ9UMN6 2715 aaPredicted RBP9.13□□□□□ -0.95
NPHP4-208ENST00000478423 PSORS1C2Q9UIG4 136 aa9.12□□□□□ -0.95
NPHP4-208ENST00000478423 H3BPC8 53 aa9.11□□□□□ -0.95
NPHP4-208ENST00000478423 A0A1W2PNM2 257 aa9.09□□□□□ -0.95
NPHP4-208ENST00000478423 SSBP3-AS1Q7Z2R9 100 aa9.09□□□□□ -0.95
NPHP4-208ENST00000478423 PRR15Q8IV56 129 aa9.09□□□□□ -0.95
NPHP4-208ENST00000478423 SMR3BP02814 79 aaPredicted RBP9.07□□□□□ -0.96
NPHP4-208ENST00000478423 MRPL34Q9BQ48 92 aaKnown RBP9.07□□□□□ -0.96
NPHP4-208ENST00000478423 NF1P21359 2839 aa9.07□□□□□ -0.96
NPHP4-208ENST00000478423 LAMA5O15230 3695 aa9.07□□□□□ -0.96
NPHP4-208ENST00000478423 C7orf65Q6ZTY9 151 aa9.07□□□□□ -0.96
NPHP4-208ENST00000478423 IGLV5-37A0A075B6J1 123 aa9.06□□□□□ -0.96
NPHP4-208ENST00000478423 PMAIP1Q13794 54 aa9.06□□□□□ -0.96
NPHP4-208ENST00000478423 Q96NJ1 140 aa9.06□□□□□ -0.96
NPHP4-208ENST00000478423 DCHS2Q6V1P9 2916 aa9.06□□□□□ -0.96
NPHP4-208ENST00000478423 TENM4Q6N022 2769 aa9.06□□□□□ -0.96
NPHP4-208ENST00000478423 RPS28P62857 69 aaKnown RBP9.05□□□□□ -0.96
NPHP4-208ENST00000478423 IGLV7-43P04211 117 aa9.05□□□□□ -0.96
NPHP4-208ENST00000478423 ACYP2P14621 99 aa9.05□□□□□ -0.96
NPHP4-208ENST00000478423 RELNP78509 3460 aa9.04□□□□□ -0.96
NPHP4-208ENST00000478423 SPRR4Q96PI1 79 aa9.04□□□□□ -0.96
NPHP4-208ENST00000478423 IGLV5-48A0A075B6I7 105 aa9.04□□□□□ -0.96
NPHP4-208ENST00000478423 C8orf87E5RJ46 101 aa9.04□□□□□ -0.96
NPHP4-208ENST00000478423 TNP2Q05952 138 aa9.03□□□□□ -0.96
NPHP4-208ENST00000478423 C8orf17Q9NRJ1 99 aa9.03□□□□□ -0.96
NPHP4-208ENST00000478423 C1orf195Q5TG92 126 aa9.02□□□□□ -0.97
NPHP4-208ENST00000478423 Q8NDZ9 215 aa9.01□□□□□ -0.97
NPHP4-208ENST00000478423 SPAG11AQ6PDA7 123 aa9.01□□□□□ -0.97
NPHP4-208ENST00000478423 OBSCN-AS1Q96MR7 158 aa9.01□□□□□ -0.97
NPHP4-208ENST00000478423 LOC101927531A0A1B0GV80 90 aa9□□□□□ -0.97
NPHP4-208ENST00000478423 CRYBG3Q68DQ2 2970 aa9□□□□□ -0.97
NPHP4-208ENST00000478423 DMDP11532 3685 aa9□□□□□ -0.97
NPHP4-208ENST00000478423 LINC01600Q96MT4 127 aa9□□□□□ -0.97
NPHP4-208ENST00000478423 A0A1B0GVX0 72 aa9□□□□□ -0.97
NPHP4-208ENST00000478423 DSCR10P59022 87 aa8.99□□□□□ -0.97
NPHP4-208ENST00000478423 KLKP1Q107X0 134 aa8.99□□□□□ -0.97
NPHP4-208ENST00000478423 LINC00304Q8N9R0 145 aa8.98□□□□□ -0.97
NPHP4-208ENST00000478423 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.98□□□□□ -0.97
NPHP4-208ENST00000478423 A0A1B0GU69 56 aa8.97□□□□□ -0.97
NPHP4-208ENST00000478423 FBN2P35556 2912 aa8.96□□□□□ -0.98
NPHP4-208ENST00000478423 C4orf26Q17RF5 130 aa8.96□□□□□ -0.98
NPHP4-208ENST00000478423 LINC00336Q6ZUF6 198 aa8.95□□□□□ -0.98
NPHP4-208ENST00000478423 HRNRQ86YZ3 2850 aaPredicted RBP8.93□□□□□ -0.98
NPHP4-208ENST00000478423 ATP11AUNQ6ZP68 121 aa8.92□□□□□ -0.98
NPHP4-208ENST00000478423 KRTAP1-5Q9BYS1 174 aa8.92□□□□□ -0.98
NPHP4-208ENST00000478423 FLG2Q5D862 2391 aaPredicted RBP8.92□□□□□ -0.98
NPHP4-208ENST00000478423 H7BZZ5 65 aa8.9□□□□□ -0.98
NPHP4-208ENST00000478423 DMBT1Q9UGM3 2413 aaPredicted RBP8.9□□□□□ -0.98
NPHP4-208ENST00000478423 CUBNO60494 3623 aa8.88□□□□□ -0.99
NPHP4-208ENST00000478423 KRTAP26-1Q6PEX3 210 aa8.88□□□□□ -0.99
NPHP4-208ENST00000478423 SPRR1AP35321 89 aa8.87□□□□□ -0.99
NPHP4-208ENST00000478423 C9orf92A6NGG3 77 aa8.87□□□□□ -0.99
NPHP4-208ENST00000478423 COA5Q86WW8 74 aa8.87□□□□□ -0.99
NPHP4-208ENST00000478423 PRO0628Q9UI54 55 aa8.86□□□□□ -0.99
NPHP4-208ENST00000478423 IGLV8-61A0A075B6I0 122 aa8.85□□□□□ -0.99
NPHP4-208ENST00000478423 J3QL48 77 aa8.84□□□□□ -0.99
NPHP4-208ENST00000478423 CSMD1Q96PZ7 3565 aa8.82□□□□□ -1
NPHP4-208ENST00000478423 A8MUN3 132 aa8.82□□□□□ -1
NPHP4-208ENST00000478423 OCR1Q9BZK8 76 aa8.8□□□□□ -1
NPHP4-208ENST00000478423 PLAC8Q9NZF1 115 aa8.8□□□□□ -1
NPHP4-208ENST00000478423 SMG1Q96Q15 3661 aaKnown RBP8.79□□□□□ -1
NPHP4-208ENST00000478423 MXRA5Q9NR99 2828 aa8.76□□□□□ -1.01
NPHP4-208ENST00000478423 PRR26Q8N8Z3 221 aa8.75□□□□□ -1.01
NPHP4-208ENST00000478423 CD164Q04900 197 aa8.74□□□□□ -1.01
NPHP4-208ENST00000478423 SVEP1Q4LDE5 3571 aa8.73□□□□□ -1.01
NPHP4-208ENST00000478423 CELSR1Q9NYQ6 3014 aa8.72□□□□□ -1.01
NPHP4-208ENST00000478423 SPRR1BP22528 89 aa8.7□□□□□ -1.02
NPHP4-208ENST00000478423 SPANXA2-OT1Q8N9U9 137 aa8.68□□□□□ -1.02
NPHP4-208ENST00000478423 FAM229BQ4G0N7 80 aa8.68□□□□□ -1.02
NPHP4-208ENST00000478423 CYP4F30PQ9H0H9 118 aa8.68□□□□□ -1.02
NPHP4-208ENST00000478423 UQCR11O14957 56 aa8.66□□□□□ -1.02
NPHP4-208ENST00000478423 Q8N1X5 172 aa8.66□□□□□ -1.02
NPHP4-208ENST00000478423 CYSTM1Q9H1C7 97 aa8.65□□□□□ -1.03
NPHP4-208ENST00000478423 PANO1I0J062 215 aa8.64□□□□□ -1.03
NPHP4-208ENST00000478423 MMP24-AS1A0A0U1RRL7 71 aa8.64□□□□□ -1.03
NPHP4-208ENST00000478423 TENM3Q9P273 2699 aa8.63□□□□□ -1.03
NPHP4-208ENST00000478423 KRTAP10-2P60368 255 aa8.63□□□□□ -1.03
NPHP4-208ENST00000478423 LINC00472Q9H8W2 130 aa8.63□□□□□ -1.03
NPHP4-208ENST00000478423 COX6B2Q6YFQ2 88 aa8.62□□□□□ -1.03
NPHP4-208ENST00000478423 KRTAP4-16G5E9R7 235 aaPredicted RBP8.61□□□□□ -1.03
NPHP4-208ENST00000478423 KRTAP10-1P60331 282 aa8.6□□□□□ -1.03
NPHP4-208ENST00000478423 Q6ZR54 194 aa8.58□□□□□ -1.04
NPHP4-208ENST00000478423 IGLV7-46A0A075B6I9 117 aa8.56□□□□□ -1.04
NPHP4-208ENST00000478423 MIR22HGQ0VDD5 57 aa8.54□□□□□ -1.04
NPHP4-208ENST00000478423 LCE6AA0A183 80 aa8.54□□□□□ -1.04
NPHP4-208ENST00000478423 HRES1P13985 223 aa8.53□□□□□ -1.04
NPHP4-208ENST00000478423 Q8N9P0 234 aaPredicted RBP8.52□□□□□ -1.05
NPHP4-208ENST00000478423 RBM12B-AS1Q9P1G2 102 aa8.52□□□□□ -1.05
NPHP4-208ENST00000478423 TENM1Q9UKZ4 2725 aa8.51□□□□□ -1.05
NPHP4-208ENST00000478423 SPENQ96T58 3664 aaKnown RBP8.49□□□□□ -1.05
NPHP4-208ENST00000478423 PKD1L1Q8TDX9 2849 aa8.47□□□□□ -1.05
NPHP4-208ENST00000478423 Q6ZRN7 208 aaPredicted RBP8.46□□□□□ -1.05
NPHP4-208ENST00000478423 LINC00483Q53H64 154 aa8.45□□□□□ -1.06
NPHP4-208ENST00000478423 Q6ZSA8 131 aa8.45□□□□□ -1.06
NPHP4-208ENST00000478423 KRTAP11-1Q8IUC1 163 aa8.45□□□□□ -1.06
NPHP4-208ENST00000478423 ZCCHC13Q8WW36 166 aaKnown RBP8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 100.3 ms