RNA–Protein interactions for RNA: ENST00000477612.5

COL9A3-211, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 635 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-211ENST00000477612 PAM16Q9Y3D7 125 aa11.91□□□□□ -0.5
COL9A3-211ENST00000477612 IGLV8-61A0A075B6I0 122 aa11.9□□□□□ -0.5
COL9A3-211ENST00000477612 CFC1BP0CG36 223 aa11.9□□□□□ -0.5
COL9A3-211ENST00000477612 CFC1P0CG37 223 aa11.9□□□□□ -0.5
COL9A3-211ENST00000477612 C1orf195Q5TG92 126 aa11.9□□□□□ -0.5
COL9A3-211ENST00000477612 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP11.9□□□□□ -0.5
COL9A3-211ENST00000477612 F8WEM9 126 aa11.89□□□□□ -0.51
COL9A3-211ENST00000477612 C2orf91Q6ZV80 131 aa11.88□□□□□ -0.51
COL9A3-211ENST00000477612 PPDPFLQ8WWR9 84 aa11.88□□□□□ -0.51
COL9A3-211ENST00000477612 VAMP8Q9BV40 100 aa11.88□□□□□ -0.51
COL9A3-211ENST00000477612 Q6JHZ5 121 aa11.86□□□□□ -0.51
COL9A3-211ENST00000477612 A0A0B4J2C4 111 aa11.85□□□□□ -0.51
COL9A3-211ENST00000477612 C9orf92A6NGG3 77 aa11.83□□□□□ -0.52
COL9A3-211ENST00000477612 TCL1BO95988 128 aa11.83□□□□□ -0.52
COL9A3-211ENST00000477612 OCIAD2Q56VL3 154 aa11.83□□□□□ -0.52
COL9A3-211ENST00000477612 RAB37Q96AX2 223 aa11.83□□□□□ -0.52
COL9A3-211ENST00000477612 CLEC2BQ92478 149 aa11.82□□□□□ -0.52
COL9A3-211ENST00000477612 IGFL1Q6UW32 110 aa11.81□□□□□ -0.52
COL9A3-211ENST00000477612 H0YGX0 51 aa11.8□□□□□ -0.52
COL9A3-211ENST00000477612 CEND1Q8N111 149 aa11.8□□□□□ -0.52
COL9A3-211ENST00000477612 TMA7Q9Y2S6 64 aaKnown RBP11.78□□□□□ -0.52
COL9A3-211ENST00000477612 TRBV7-7A0A0K0K1E9 115 aa11.77□□□□□ -0.53
COL9A3-211ENST00000477612 SNHG12Q9BXW3 62 aa11.77□□□□□ -0.53
COL9A3-211ENST00000477612 TMEM238LA0A1B0GVL6 79 aa11.74□□□□□ -0.53
COL9A3-211ENST00000477612 A6NJY4 79 aa11.74□□□□□ -0.53
COL9A3-211ENST00000477612 SNCGO76070 127 aa11.74□□□□□ -0.53
COL9A3-211ENST00000477612 PCOTHQ58A44 107 aa11.74□□□□□ -0.53
COL9A3-211ENST00000477612 PYY3Q5JQD4 70 aa11.74□□□□□ -0.53
COL9A3-211ENST00000477612 FAM218AQ96MZ4 157 aa11.74□□□□□ -0.53
COL9A3-211ENST00000477612 PRO1854Q9UHT4 67 aa11.74□□□□□ -0.53
COL9A3-211ENST00000477612 A0A1B0GX51 115 aa11.72□□□□□ -0.53
COL9A3-211ENST00000477612 FXYD2P54710 66 aa11.72□□□□□ -0.53
COL9A3-211ENST00000477612 Q6Q795 121 aa11.68□□□□□ -0.54
COL9A3-211ENST00000477612 H3BUT2 72 aa11.67□□□□□ -0.54
COL9A3-211ENST00000477612 RPL37P61927 97 aaKnown RBP11.67□□□□□ -0.54
COL9A3-211ENST00000477612 GHRHP01286 108 aa11.66□□□□□ -0.54
COL9A3-211ENST00000477612 NDUFV3P56181 108 aaKnown RBP11.66□□□□□ -0.54
COL9A3-211ENST00000477612 KRTAP19-2Q3LHN2 52 aa11.65□□□□□ -0.54
COL9A3-211ENST00000477612 HSD52Q0P140 79 aa11.64□□□□□ -0.55
COL9A3-211ENST00000477612 LCE2CQ5TA81 110 aa11.64□□□□□ -0.55
COL9A3-211ENST00000477612 KRTAP9-2Q9BYQ4 174 aa11.64□□□□□ -0.55
COL9A3-211ENST00000477612 TRIAP1O43715 76 aa11.63□□□□□ -0.55
COL9A3-211ENST00000477612 TEN1Q86WV5 123 aa11.61□□□□□ -0.55
COL9A3-211ENST00000477612 LST1O00453 97 aa11.6□□□□□ -0.55
COL9A3-211ENST00000477612 SS18L2Q9UHA2 77 aa11.59□□□□□ -0.55
COL9A3-211ENST00000477612 H3BMG7 143 aa11.57□□□□□ -0.56
COL9A3-211ENST00000477612 UQCR10Q9UDW1 63 aa11.56□□□□□ -0.56
COL9A3-211ENST00000477612 FABP2P12104 132 aa11.55□□□□□ -0.56
COL9A3-211ENST00000477612 H3BQ85 93 aa11.53□□□□□ -0.56
COL9A3-211ENST00000477612 K7ERJ3 54 aa11.52□□□□□ -0.57
COL9A3-211ENST00000477612 COX6CP09669 75 aa11.51□□□□□ -0.57
COL9A3-211ENST00000477612 A0A087WSZ3 146 aa11.5□□□□□ -0.57
COL9A3-211ENST00000477612 DNAL4O96015 105 aa11.5□□□□□ -0.57
COL9A3-211ENST00000477612 PSMB2P49721 201 aa11.5□□□□□ -0.57
COL9A3-211ENST00000477612 Q75L30 129 aa11.5□□□□□ -0.57
COL9A3-211ENST00000477612 OBSCN-AS1Q96MR7 158 aa11.5□□□□□ -0.57
COL9A3-211ENST00000477612 ORMDL1Q9P0S3 153 aa11.5□□□□□ -0.57
COL9A3-211ENST00000477612 A0A1W2PNM2 257 aa11.49□□□□□ -0.57
COL9A3-211ENST00000477612 Q96NJ1 140 aa11.48□□□□□ -0.57
COL9A3-211ENST00000477612 TMEM256-PLSCR3K7ERE1 68 aa11.47□□□□□ -0.57
COL9A3-211ENST00000477612 MT1HP80294 61 aa11.47□□□□□ -0.57
COL9A3-211ENST00000477612 ANKRD29Q8N6D5 301 aa11.44□□□□□ -0.58
COL9A3-211ENST00000477612 TRBV7-4A0A0J9YYF1 115 aa11.43□□□□□ -0.58
COL9A3-211ENST00000477612 ATP11AUNQ6ZP68 121 aa11.42□□□□□ -0.58
COL9A3-211ENST00000477612 TRACP01848 142 aa11.41□□□□□ -0.58
COL9A3-211ENST00000477612 UBE2V1Q13404 147 aa11.41□□□□□ -0.58
COL9A3-211ENST00000477612 C20orf166-AS1Q96NR2 134 aa11.4□□□□□ -0.58
COL9A3-211ENST00000477612 A8MUU9 505 aa11.37□□□□□ -0.59
COL9A3-211ENST00000477612 SMIM6P0DI80 62 aa11.37□□□□□ -0.59
COL9A3-211ENST00000477612 LCE2DQ5TA82 110 aaPredicted RBP11.36□□□□□ -0.59
COL9A3-211ENST00000477612 SCGB1C2P0DMR2 95 aa11.34□□□□□ -0.59
COL9A3-211ENST00000477612 FLGP20930 4061 aaPredicted RBP11.34□□□□□ -0.59
COL9A3-211ENST00000477612 A0A1B0GV72 72 aa11.32□□□□□ -0.6
COL9A3-211ENST00000477612 CCKP06307 115 aa11.32□□□□□ -0.6
COL9A3-211ENST00000477612 LINC00472Q9H8W2 130 aa11.31□□□□□ -0.6
COL9A3-211ENST00000477612 LOC105371267A0A1B0GV96 52 aa11.29□□□□□ -0.6
COL9A3-211ENST00000477612 IGKV4-1P06312 121 aa11.29□□□□□ -0.6
COL9A3-211ENST00000477612 DSCR10P59022 87 aa11.29□□□□□ -0.6
COL9A3-211ENST00000477612 COX6B2Q6YFQ2 88 aa11.29□□□□□ -0.6
COL9A3-211ENST00000477612 SIGMAR1Q99720 223 aa11.29□□□□□ -0.6
COL9A3-211ENST00000477612 RBM3P98179 157 aaKnown RBP11.27□□□□□ -0.61
COL9A3-211ENST00000477612 LORP23490 312 aaPredicted RBP11.26□□□□□ -0.61
COL9A3-211ENST00000477612 LINC00313P59037 77 aa11.26□□□□□ -0.61
COL9A3-211ENST00000477612 M0R143 59 aa11.25□□□□□ -0.61
COL9A3-211ENST00000477612 KRTAP10-6P60371 365 aaPredicted RBP11.25□□□□□ -0.61
COL9A3-211ENST00000477612 KRTAP16-1A8MUX0 517 aa11.24□□□□□ -0.61
COL9A3-211ENST00000477612 BAALC-AS2P0C853 105 aa11.24□□□□□ -0.61
COL9A3-211ENST00000477612 DSCR8Q96T75 97 aa11.23□□□□□ -0.61
COL9A3-211ENST00000477612 KRTAP9-6A0A140TA67 174 aa11.22□□□□□ -0.61
COL9A3-211ENST00000477612 DEFB116Q30KQ4 102 aa11.21□□□□□ -0.61
COL9A3-211ENST00000477612 NOTCH2NLQ7Z3S9 236 aa11.19□□□□□ -0.62
COL9A3-211ENST00000477612 TSTD3H0UI37 97 aa11.18□□□□□ -0.62
COL9A3-211ENST00000477612 M0R2T5 61 aa11.18□□□□□ -0.62
COL9A3-211ENST00000477612 C21orf62-AS1Q17RA5 79 aa11.18□□□□□ -0.62
COL9A3-211ENST00000477612 C9JAW5 83 aa11.17□□□□□ -0.62
COL9A3-211ENST00000477612 ATXN8Q156A1 80 aa11.17□□□□□ -0.62
COL9A3-211ENST00000477612 VPS25Q9BRG1 176 aa11.17□□□□□ -0.62
COL9A3-211ENST00000477612 NAA38Q9BRA0 125 aaKnown RBP11.14□□□□□ -0.63
COL9A3-211ENST00000477612 JMJD7-PLA2G4BH0Y9G9 81 aa11.13□□□□□ -0.63
COL9A3-211ENST00000477612 IGHV6-1A0A0B4J1U7 121 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 84.3 ms