RNA–Protein interactions for RNA: ENST00000475540.1

SMC5-203, Transcript of structural maintenance of chromosomes 5, humanhuman

TSL 3

Gene SMC5, Length 688 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC5-203ENST00000475540 ABCC1P33527 1531 aa1.1□□□□□ -2.23
SMC5-203ENST00000475540 ATP7AQ04656 1500 aa1.1□□□□□ -2.23
SMC5-203ENST00000475540 PTPRQQ9UMZ3 2332 aa1.1□□□□□ -2.23
SMC5-203ENST00000475540 APCP25054 2843 aa1.1□□□□□ -2.23
SMC5-203ENST00000475540 CFAP74Q9C0B2 1584 aa1.1□□□□□ -2.23
SMC5-203ENST00000475540 WNK1Q9H4A3 2382 aa1.1□□□□□ -2.23
SMC5-203ENST00000475540 GOLGA4Q13439 2230 aaKnown RBP1.1□□□□□ -2.23
SMC5-203ENST00000475540 ANKRD36A6QL64 1941 aa1.1□□□□□ -2.23
SMC5-203ENST00000475540 ABCA5Q8WWZ7 1642 aa1.1□□□□□ -2.23
SMC5-203ENST00000475540 ABCC8Q09428 1581 aa1.09□□□□□ -2.23
SMC5-203ENST00000475540 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP1.09□□□□□ -2.231e-6■■■□□ 14.9
SMC5-203ENST00000475540 MROH1Q8NDA8 1641 aa1.09□□□□□ -2.23
SMC5-203ENST00000475540 FXYD6-FXYD2A0A087WZ82 144 aa1.09□□□□□ -2.23
SMC5-203ENST00000475540 H3BUT2 72 aa1.09□□□□□ -2.23
SMC5-203ENST00000475540 BVES-AS1Q5T3Y7 98 aa1.09□□□□□ -2.23
SMC5-203ENST00000475540 ASXL1Q8IXJ9 1541 aa1.09□□□□□ -2.24
SMC5-203ENST00000475540 LAMA5O15230 3695 aa1.09□□□□□ -2.24
SMC5-203ENST00000475540 DEFB112Q30KQ8 113 aa1.08□□□□□ -2.24
SMC5-203ENST00000475540 KRTAP19-3Q7Z4W3 81 aa1.08□□□□□ -2.24
SMC5-203ENST00000475540 USMG5Q96IX5 58 aa1.08□□□□□ -2.24
SMC5-203ENST00000475540 QSER1Q2KHR3 1735 aa1.08□□□□□ -2.24
SMC5-203ENST00000475540 MGAQ8IWI9 3026 aa1.08□□□□□ -2.24
SMC5-203ENST00000475540 AGLP35573 1532 aa1.08□□□□□ -2.24
SMC5-203ENST00000475540 DNMBPQ6XZF7 1577 aa1.08□□□□□ -2.24
SMC5-203ENST00000475540 KIF20BQ96Q89 1820 aa1.08□□□□□ -2.24
SMC5-203ENST00000475540 SVEP1Q4LDE5 3571 aa1.07□□□□□ -2.24
SMC5-203ENST00000475540 CSPG4Q6UVK1 2322 aa1.07□□□□□ -2.24
SMC5-203ENST00000475540 NBASA2RRP1 2371 aa1.07□□□□□ -2.24
SMC5-203ENST00000475540 PTPN23Q9H3S7 1636 aa1.07□□□□□ -2.24
SMC5-203ENST00000475540 NKTRP30414 1462 aaKnown RBP1.06□□□□□ -2.24
SMC5-203ENST00000475540 UGGT2Q9NYU1 1516 aa1.06□□□□□ -2.24
SMC5-203ENST00000475540 ADAMTS12P58397 1594 aa1.06□□□□□ -2.24
SMC5-203ENST00000475540 LAMA1P25391 3075 aa1.06□□□□□ -2.24
SMC5-203ENST00000475540 ANKARQ7Z5J8 1434 aa1.06□□□□□ -2.24
SMC5-203ENST00000475540 CHD9Q3L8U1 2897 aa1.06□□□□□ -2.24
SMC5-203ENST00000475540 FSIP2Q5CZC0 6907 aa1.05□□□□□ -2.24
SMC5-203ENST00000475540 CENPEQ02224 2701 aa1.05□□□□□ -2.24
SMC5-203ENST00000475540 ABCA6Q8N139 1617 aa1.05□□□□□ -2.24
SMC5-203ENST00000475540 PLCH1Q4KWH8 1693 aa1.05□□□□□ -2.24
SMC5-203ENST00000475540 SPINK6Q6UWN8 80 aa1.05□□□□□ -2.24
SMC5-203ENST00000475540 SSPOA2VEC9 5147 aa1.05□□□□□ -2.24
SMC5-203ENST00000475540 ITSN1Q15811 1721 aa1.05□□□□□ -2.24
SMC5-203ENST00000475540 LTN1O94822 1766 aa1.05□□□□□ -2.24
SMC5-203ENST00000475540 ABCA9Q8IUA7 1624 aa1.04□□□□□ -2.24
SMC5-203ENST00000475540 TJP1Q07157 1748 aa1.04□□□□□ -2.24
SMC5-203ENST00000475540 K7EQZ3 153 aa1.04□□□□□ -2.24
SMC5-203ENST00000475540 COX6B1P14854 86 aa1.04□□□□□ -2.24
SMC5-203ENST00000475540 STAB2Q8WWQ8 2551 aa1.04□□□□□ -2.24
SMC5-203ENST00000475540 CACNA1EQ15878 2313 aa1.04□□□□□ -2.24
SMC5-203ENST00000475540 TIAM2Q8IVF5 1701 aa1.03□□□□□ -2.24
SMC5-203ENST00000475540 NDUFB1O75438 58 aa1.03□□□□□ -2.24
SMC5-203ENST00000475540 COX8AP10176 69 aa1.03□□□□□ -2.24
SMC5-203ENST00000475540 DEFB121Q5J5C9 76 aa1.03□□□□□ -2.24
SMC5-203ENST00000475540 ATP5EP2Q5VTU8 51 aa1.03□□□□□ -2.24
SMC5-203ENST00000475540 NRAPQ86VF7 1730 aa1.03□□□□□ -2.24
SMC5-203ENST00000475540 DMBT1Q9UGM3 2413 aaPredicted RBP1.03□□□□□ -2.25
SMC5-203ENST00000475540 APC2O95996 2303 aa1.02□□□□□ -2.25
SMC5-203ENST00000475540 NEBP20929 6669 aa1.02□□□□□ -2.25
SMC5-203ENST00000475540 MAP1AP78559 2803 aaPredicted RBP1.02□□□□□ -2.25
SMC5-203ENST00000475540 NCOA2Q15596 1464 aa1.02□□□□□ -2.25
SMC5-203ENST00000475540 Q5VSD8 79 aa1.02□□□□□ -2.25
SMC5-203ENST00000475540 RNF213Q63HN8 5207 aa1.02□□□□□ -2.25
SMC5-203ENST00000475540 CRIPTQ9P021 101 aa1.02□□□□□ -2.25
SMC5-203ENST00000475540 PLCE1Q9P212 2302 aa1.02□□□□□ -2.25
SMC5-203ENST00000475540 ACANP16112 2415 aa1.01□□□□□ -2.25
SMC5-203ENST00000475540 SONP18583 2426 aaKnown RBP1.01□□□□□ -2.25
SMC5-203ENST00000475540 RGPD8O14715 1765 aaPredicted RBP1.01□□□□□ -2.25
SMC5-203ENST00000475540 RGPD5Q99666 1765 aa1.01□□□□□ -2.25
SMC5-203ENST00000475540 NHSQ6T4R5 1651 aa1.01□□□□□ -2.25
SMC5-203ENST00000475540 PIK3C2BO00750 1634 aa1.01□□□□□ -2.25
SMC5-203ENST00000475540 LMTK2Q8IWU2 1503 aa1.01□□□□□ -2.25
SMC5-203ENST00000475540 HFM1A2PYH4 1435 aa1.01□□□□□ -2.25
SMC5-203ENST00000475540 AKAP9Q99996 3911 aa1.01□□□□□ -2.25
SMC5-203ENST00000475540 SPTY2D1-AS1A0A0U1RR47 76 aa1.01□□□□□ -2.25
SMC5-203ENST00000475540 C18orf32Q8TCD1 76 aa1.01□□□□□ -2.25
SMC5-203ENST00000475540 GAFA1Q96PS6 74 aa1.01□□□□□ -2.25
SMC5-203ENST00000475540 VPS13CQ709C8 3753 aa1.01□□□□□ -2.25
SMC5-203ENST00000475540 CLTCL1P53675 1640 aa1□□□□□ -2.25
SMC5-203ENST00000475540 TSC2P49815 1807 aa1□□□□□ -2.25
SMC5-203ENST00000475540 SPTBN1Q01082 2364 aaKnown RBP1□□□□□ -2.25
SMC5-203ENST00000475540 RGPD2P0DJD1 1756 aa0.99□□□□□ -2.25
SMC5-203ENST00000475540 COL14A1Q05707 1796 aaKnown RBP0.99□□□□□ -2.25
SMC5-203ENST00000475540 LRRIQ1Q96JM4 1722 aa0.99□□□□□ -2.25
SMC5-203ENST00000475540 TRAV21A0A0B4J279 112 aa0.99□□□□□ -2.25
SMC5-203ENST00000475540 I3L3M4 83 aa0.99□□□□□ -2.25
SMC5-203ENST00000475540 COX7BP24311 80 aa0.99□□□□□ -2.25
SMC5-203ENST00000475540 KRTAP20-1Q3LI63 56 aa0.99□□□□□ -2.25
SMC5-203ENST00000475540 ZNF831Q5JPB2 1677 aa0.99□□□□□ -2.25
SMC5-203ENST00000475540 TACC2O95359 2948 aa0.99□□□□□ -2.25
SMC5-203ENST00000475540 CFDP00746 253 aaPredicted RBP0.98□□□□□ -2.25
SMC5-203ENST00000475540 PRH1P02810 166 aa0.98□□□□□ -2.25
SMC5-203ENST00000475540 RPL38P63173 70 aaKnown RBP0.98□□□□□ -2.25
SMC5-203ENST00000475540 WFDC9Q8NEX5 89 aa0.98□□□□□ -2.25
SMC5-203ENST00000475540 SYNE2Q8WXH0 6885 aaKnown RBP0.98□□□□□ -2.25
SMC5-203ENST00000475540 COL7A1Q02388 2944 aa0.98□□□□□ -2.25
SMC5-203ENST00000475540 UBR3Q6ZT12 1888 aa0.97□□□□□ -2.25
SMC5-203ENST00000475540 PRKDCP78527 4128 aaKnown RBP0.97□□□□□ -2.25
SMC5-203ENST00000475540 URB1O60287 2271 aaKnown RBP0.97□□□□□ -2.25
SMC5-203ENST00000475540 MACF1Q9UPN3 7388 aaKnown RBP0.97□□□□□ -2.25
SMC5-203ENST00000475540 ANK2Q01484 3957 aa0.96□□□□□ -2.26
Retrieved 100 of 20,778 RNA–protein pairs in 147.7 ms