RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 LINC00483Q53H64 154 aa8.05□□□□□ -1.12
UPF3A-204ENST00000475218 ADAMTSL4-AS1Q5T5F5 129 aa8.05□□□□□ -1.12
UPF3A-204ENST00000475218 MUSTN1Q8IVN3 82 aa8.05□□□□□ -1.12
UPF3A-204ENST00000475218 ETDCA0A1B0GVM5 59 aa8.05□□□□□ -1.12
UPF3A-204ENST00000475218 TPRXLQ17RH7 258 aa8.05□□□□□ -1.12
UPF3A-204ENST00000475218 Q6Q795 121 aa8.05□□□□□ -1.12
UPF3A-204ENST00000475218 Q9BRP9 147 aa8.05□□□□□ -1.12
UPF3A-204ENST00000475218 PPDPFQ9H3Y8 114 aa8.05□□□□□ -1.12
UPF3A-204ENST00000475218 MUC17Q685J3 4493 aa8.04□□□□□ -1.12
UPF3A-204ENST00000475218 C9JAW5 83 aa8.04□□□□□ -1.12
UPF3A-204ENST00000475218 H3BT86 120 aa8.04□□□□□ -1.12
UPF3A-204ENST00000475218 ZNF706Q9Y5V0 76 aaPredicted RBP8.04□□□□□ -1.12
UPF3A-204ENST00000475218 IGLV7-46A0A075B6I9 117 aa8.03□□□□□ -1.12
UPF3A-204ENST00000475218 IGLV6-57P01721 117 aa8.03□□□□□ -1.12
UPF3A-204ENST00000475218 MT-ATP8P03928 68 aa8.02□□□□□ -1.13
UPF3A-204ENST00000475218 Q1RN00 199 aa8.02□□□□□ -1.13
UPF3A-204ENST00000475218 Q8NBF4 154 aa8.02□□□□□ -1.13
UPF3A-204ENST00000475218 NDUFC2O95298 119 aa8.02□□□□□ -1.13
UPF3A-204ENST00000475218 LITAFQ99732 161 aa8.02□□□□□ -1.13
UPF3A-204ENST00000475218 FAM240AA0A1B0GVK7 77 aa8.01□□□□□ -1.13
UPF3A-204ENST00000475218 SPAG11AQ6PDA7 123 aa8.01□□□□□ -1.13
UPF3A-204ENST00000475218 Q6ZRX8 168 aa8.01□□□□□ -1.13
UPF3A-204ENST00000475218 FAT4Q6V0I7 4981 aa8.01□□□□□ -1.13
UPF3A-204ENST00000475218 NPC2P61916 151 aa8□□□□□ -1.13
UPF3A-204ENST00000475218 SNCGO76070 127 aa7.99□□□□□ -1.13
UPF3A-204ENST00000475218 GAGE2AQ6NT46 116 aa7.99□□□□□ -1.13
UPF3A-204ENST00000475218 TRIAP1O43715 76 aa7.98□□□□□ -1.13
UPF3A-204ENST00000475218 ANAPC13Q9BS18 74 aa7.97□□□□□ -1.13
UPF3A-204ENST00000475218 TRAV23DV6A0A075B6W5 121 aa7.97□□□□□ -1.13
UPF3A-204ENST00000475218 LST1O00453 97 aa7.97□□□□□ -1.13
UPF3A-204ENST00000475218 ACYP1P07311 99 aa7.96□□□□□ -1.14
UPF3A-204ENST00000475218 MOBPQ13875 183 aa7.96□□□□□ -1.14
UPF3A-204ENST00000475218 S100A7L2Q5SY68 101 aa7.96□□□□□ -1.14
UPF3A-204ENST00000475218 H7C2G1 150 aa7.95□□□□□ -1.14
UPF3A-204ENST00000475218 IGLV9-49A0A0B4J1Y8 123 aa7.94□□□□□ -1.14
UPF3A-204ENST00000475218 ZNF73O43830 326 aaPredicted RBP7.94□□□□□ -1.14
UPF3A-204ENST00000475218 SPINK1P00995 79 aa7.94□□□□□ -1.14
UPF3A-204ENST00000475218 KRTAP13-3Q3SY46 172 aa7.94□□□□□ -1.14
UPF3A-204ENST00000475218 LCE2AQ5TA79 106 aaPredicted RBP7.94□□□□□ -1.14
UPF3A-204ENST00000475218 FP248Q71RG6 208 aaPredicted RBP7.94□□□□□ -1.14
UPF3A-204ENST00000475218 LINC00308Q8TCZ7 52 aa7.94□□□□□ -1.14
UPF3A-204ENST00000475218 C4orf48Q5BLP8 95 aa7.94□□□□□ -1.14
UPF3A-204ENST00000475218 ST20-AS1Q8NBB2 130 aa7.94□□□□□ -1.14
UPF3A-204ENST00000475218 Q8N377 158 aa7.92□□□□□ -1.14
UPF3A-204ENST00000475218 NDUFV3P56181 108 aaKnown RBP7.92□□□□□ -1.14
UPF3A-204ENST00000475218 SSBP3-AS1Q7Z2R9 100 aa7.92□□□□□ -1.14
UPF3A-204ENST00000475218 IMUPQ9GZP8 106 aa7.92□□□□□ -1.14
UPF3A-204ENST00000475218 TEX49A0A1B0GTD5 131 aa7.9□□□□□ -1.14
UPF3A-204ENST00000475218 TRACP01848 142 aa7.89□□□□□ -1.15
UPF3A-204ENST00000475218 TRBV7-7A0A0K0K1E9 115 aa7.89□□□□□ -1.15
UPF3A-204ENST00000475218 A0A0U1RQV1 116 aa7.89□□□□□ -1.15
UPF3A-204ENST00000475218 RPS29P62273 56 aaKnown RBP7.89□□□□□ -1.15
UPF3A-204ENST00000475218 KRTAP4-1Q9BYQ7 146 aa7.87□□□□□ -1.15
UPF3A-204ENST00000475218 SPRR1BP22528 89 aa7.86□□□□□ -1.15
UPF3A-204ENST00000475218 OR13C6PQ8NH95 151 aa7.86□□□□□ -1.15
UPF3A-204ENST00000475218 TRAV13-2A0A0B4J235 113 aa7.85□□□□□ -1.15
UPF3A-204ENST00000475218 C9orf153Q5TBE3 101 aa7.84□□□□□ -1.15
UPF3A-204ENST00000475218 CLEC2BQ92478 149 aa7.84□□□□□ -1.15
UPF3A-204ENST00000475218 ELOF1P60002 83 aaKnown RBP7.84□□□□□ -1.15
UPF3A-204ENST00000475218 ASB16-AS1Q495Z4 193 aa7.84□□□□□ -1.15
UPF3A-204ENST00000475218 LINC00643Q86TS7 51 aa7.84□□□□□ -1.15
UPF3A-204ENST00000475218 C6orf99Q4VX62 202 aa7.83□□□□□ -1.16
UPF3A-204ENST00000475218 DHRS4-AS1Q9P1J3 65 aa7.82□□□□□ -1.16
UPF3A-204ENST00000475218 COX7BP24311 80 aa7.8□□□□□ -1.16
UPF3A-204ENST00000475218 H0YGX0 51 aa7.79□□□□□ -1.16
UPF3A-204ENST00000475218 BAALC-AS2P0C853 105 aa7.79□□□□□ -1.16
UPF3A-204ENST00000475218 XP32Q5T750 250 aa7.78□□□□□ -1.16
UPF3A-204ENST00000475218 KRTAP9-2Q9BYQ4 174 aa7.78□□□□□ -1.16
UPF3A-204ENST00000475218 LINC01547P58512 204 aaPredicted RBP7.77□□□□□ -1.17
UPF3A-204ENST00000475218 SMIM29Q86T20 159 aa7.77□□□□□ -1.17
UPF3A-204ENST00000475218 TRBV7-6A0A0J9YX20 115 aa7.76□□□□□ -1.17
UPF3A-204ENST00000475218 HRCT1Q6UXD1 115 aa7.76□□□□□ -1.17
UPF3A-204ENST00000475218 CCDC179H3BU77 68 aa7.75□□□□□ -1.17
UPF3A-204ENST00000475218 DEFB105AQ8NG35 78 aa7.75□□□□□ -1.17
UPF3A-204ENST00000475218 DNAL4O96015 105 aa7.74□□□□□ -1.17
UPF3A-204ENST00000475218 SS18L2Q9UHA2 77 aa7.74□□□□□ -1.17
UPF3A-204ENST00000475218 LAMTOR3Q9UHA4 124 aa7.74□□□□□ -1.17
UPF3A-204ENST00000475218 IGLV5-48A0A075B6I7 105 aa7.74□□□□□ -1.17
UPF3A-204ENST00000475218 SEC61BP60468 96 aaKnown RBP7.74□□□□□ -1.17
UPF3A-204ENST00000475218 A0A1B0GX51 115 aa7.73□□□□□ -1.17
UPF3A-204ENST00000475218 A0A0G2JQZ4 141 aa7.72□□□□□ -1.17
UPF3A-204ENST00000475218 UQCRQO14949 82 aa7.71□□□□□ -1.17
UPF3A-204ENST00000475218 SMIM11BQ8TCY0 68 aa7.71□□□□□ -1.17
UPF3A-204ENST00000475218 OBSCN-AS1Q96MR7 158 aa7.71□□□□□ -1.17
UPF3A-204ENST00000475218 FAM236AA0A1B0GUQ0 79 aa7.7□□□□□ -1.18
UPF3A-204ENST00000475218 FAM236BA0A1B0GV22 79 aa7.7□□□□□ -1.18
UPF3A-204ENST00000475218 LIMD2Q9BT23 127 aa7.7□□□□□ -1.18
UPF3A-204ENST00000475218 ATOX1O00244 68 aa7.69□□□□□ -1.18
UPF3A-204ENST00000475218 CD164Q04900 197 aa7.69□□□□□ -1.18
UPF3A-204ENST00000475218 FAM218AQ96MZ4 157 aa7.69□□□□□ -1.18
UPF3A-204ENST00000475218 HIST1H4AP62805 103 aaKnown RBP7.67□□□□□ -1.18
UPF3A-204ENST00000475218 KRTAP19-2Q3LHN2 52 aa7.67□□□□□ -1.18
UPF3A-204ENST00000475218 LCE2CQ5TA81 110 aa7.67□□□□□ -1.18
UPF3A-204ENST00000475218 Q6JHZ5 121 aa7.67□□□□□ -1.18
UPF3A-204ENST00000475218 Q5XG85 94 aa7.66□□□□□ -1.18
UPF3A-204ENST00000475218 C9orf92A6NGG3 77 aa7.66□□□□□ -1.18
UPF3A-204ENST00000475218 JMJD7-PLA2G4BH0Y9G9 81 aa7.65□□□□□ -1.18
UPF3A-204ENST00000475218 COX7CP15954 63 aa7.65□□□□□ -1.18
UPF3A-204ENST00000475218 C1orf195Q5TG92 126 aa7.65□□□□□ -1.18
UPF3A-204ENST00000475218 ATP5EP2Q5VTU8 51 aa7.65□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 83 ms