RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 H3BQ85 93 aa8.59□□□□□ -1.03
CCDC88A-211ENST00000471947 F8WDY8 70 aa8.59□□□□□ -1.03
CCDC88A-211ENST00000471947 CDK2AP2O75956 126 aa8.56□□□□□ -1.04
CCDC88A-211ENST00000471947 CNBPP62633 177 aaKnown RBP8.56□□□□□ -1.04
CCDC88A-211ENST00000471947 PSORS1C2Q9UIG4 136 aa8.55□□□□□ -1.04
CCDC88A-211ENST00000471947 RETNLBQ9BQ08 111 aa8.55□□□□□ -1.04
CCDC88A-211ENST00000471947 LINC00474Q9P2X8 69 aa8.54□□□□□ -1.04
CCDC88A-211ENST00000471947 IGKV4-1P06312 121 aa8.53□□□□□ -1.04
CCDC88A-211ENST00000471947 IGHV6-1A0A0B4J1U7 121 aa8.52□□□□□ -1.05
CCDC88A-211ENST00000471947 KRTAP4-16G5E9R7 235 aaPredicted RBP8.52□□□□□ -1.05
CCDC88A-211ENST00000471947 SMR3BP02814 79 aaPredicted RBP8.52□□□□□ -1.05
CCDC88A-211ENST00000471947 FLG2Q5D862 2391 aaPredicted RBP8.52□□□□□ -1.05
CCDC88A-211ENST00000471947 TRAV7A0A075B6U4 112 aa8.51□□□□□ -1.05
CCDC88A-211ENST00000471947 CXCL6P80162 114 aa8.51□□□□□ -1.05
CCDC88A-211ENST00000471947 SPRR1AP35321 89 aa8.51□□□□□ -1.05
CCDC88A-211ENST00000471947 PLA2G2DQ9UNK4 145 aa8.51□□□□□ -1.05
CCDC88A-211ENST00000471947 BCE1O60756 84 aa8.5□□□□□ -1.05
CCDC88A-211ENST00000471947 KRTAP10-2P60368 255 aa8.5□□□□□ -1.05
CCDC88A-211ENST00000471947 MPLKIPQ8TAP9 179 aa8.49□□□□□ -1.05
CCDC88A-211ENST00000471947 IGLV5-48A0A075B6I7 105 aa8.49□□□□□ -1.05
CCDC88A-211ENST00000471947 TMEM254Q8TBM7 123 aa8.49□□□□□ -1.05
CCDC88A-211ENST00000471947 PLECQ15149 4684 aaKnown RBP8.48□□□□□ -1.05
CCDC88A-211ENST00000471947 PRKDCP78527 4128 aaKnown RBP8.48□□□□□ -1.05
CCDC88A-211ENST00000471947 FAM236DA0A1B0GTK5 79 aa8.48□□□□□ -1.05
CCDC88A-211ENST00000471947 FAM236CP0DP71 79 aa8.48□□□□□ -1.05
CCDC88A-211ENST00000471947 DMBT1Q9UGM3 2413 aaPredicted RBP8.48□□□□□ -1.05
CCDC88A-211ENST00000471947 CMYA5Q8N3K9 4069 aa8.48□□□□□ -1.05
CCDC88A-211ENST00000471947 LINC00208Q96KT6 92 aa8.47□□□□□ -1.05
CCDC88A-211ENST00000471947 DNAH9Q9NYC9 4486 aa8.47□□□□□ -1.05
CCDC88A-211ENST00000471947 IGLV5-37A0A075B6J1 123 aa8.47□□□□□ -1.05
CCDC88A-211ENST00000471947 NDUFB1O75438 58 aa8.46□□□□□ -1.05
CCDC88A-211ENST00000471947 Q6ZRN7 208 aaPredicted RBP8.46□□□□□ -1.06
CCDC88A-211ENST00000471947 CRYGAP11844 174 aa8.45□□□□□ -1.06
CCDC88A-211ENST00000471947 WWC2-AS2Q96NR7 200 aa8.44□□□□□ -1.06
CCDC88A-211ENST00000471947 DSCR10P59022 87 aa8.44□□□□□ -1.06
CCDC88A-211ENST00000471947 PCOTHQ58A44 107 aa8.44□□□□□ -1.06
CCDC88A-211ENST00000471947 HCG22E2RYF7 251 aa8.43□□□□□ -1.06
CCDC88A-211ENST00000471947 J3KT08 172 aa8.43□□□□□ -1.06
CCDC88A-211ENST00000471947 CASC2Q6XLA1 102 aa8.43□□□□□ -1.06
CCDC88A-211ENST00000471947 SPACA4Q8TDM5 124 aa8.42□□□□□ -1.06
CCDC88A-211ENST00000471947 TMEM258P61165 79 aa8.39□□□□□ -1.07
CCDC88A-211ENST00000471947 PKIGQ9Y2B9 76 aa8.39□□□□□ -1.07
CCDC88A-211ENST00000471947 MP68P56378 58 aa8.39□□□□□ -1.07
CCDC88A-211ENST00000471947 DNAH7Q8WXX0 4024 aa8.38□□□□□ -1.07
CCDC88A-211ENST00000471947 SPRR4Q96PI1 79 aa8.37□□□□□ -1.07
CCDC88A-211ENST00000471947 STARD9Q9P2P6 4700 aa8.37□□□□□ -1.07
CCDC88A-211ENST00000471947 ZNF861PO60384 105 aa8.36□□□□□ -1.07
CCDC88A-211ENST00000471947 H7BZZ5 65 aa8.34□□□□□ -1.07
CCDC88A-211ENST00000471947 KRTAP10-1P60331 282 aa8.34□□□□□ -1.07
CCDC88A-211ENST00000471947 Q6ZR54 194 aa8.33□□□□□ -1.08
CCDC88A-211ENST00000471947 C4orf26Q17RF5 130 aa8.33□□□□□ -1.08
CCDC88A-211ENST00000471947 H0Y9P7 68 aa8.32□□□□□ -1.08
CCDC88A-211ENST00000471947 KMT2AQ03164 3969 aa8.32□□□□□ -1.08
CCDC88A-211ENST00000471947 ZNF706Q9Y5V0 76 aaPredicted RBP8.32□□□□□ -1.08
CCDC88A-211ENST00000471947 C4orf48Q5BLP8 95 aa8.32□□□□□ -1.08
CCDC88A-211ENST00000471947 IGLV7-43P04211 117 aa8.31□□□□□ -1.08
CCDC88A-211ENST00000471947 hDV103S1A0JD37 113 aa8.29□□□□□ -1.08
CCDC88A-211ENST00000471947 OCR1Q9BZK8 76 aa8.29□□□□□ -1.08
CCDC88A-211ENST00000471947 PRR15Q8IV56 129 aa8.28□□□□□ -1.08
CCDC88A-211ENST00000471947 OXTP01178 125 aa8.28□□□□□ -1.08
CCDC88A-211ENST00000471947 PLA2G1BP04054 148 aaKnown RBP8.26□□□□□ -1.09
CCDC88A-211ENST00000471947 C5orf47Q569G3 176 aa8.26□□□□□ -1.09
CCDC88A-211ENST00000471947 A8MWP4 228 aa8.25□□□□□ -1.09
CCDC88A-211ENST00000471947 C1orf64Q8NEQ6 169 aa8.25□□□□□ -1.09
CCDC88A-211ENST00000471947 A0A087X002 238 aa8.25□□□□□ -1.09
CCDC88A-211ENST00000471947 NOTCH2NLQ7Z3S9 236 aa8.25□□□□□ -1.09
CCDC88A-211ENST00000471947 A0A0U1RQV1 116 aa8.24□□□□□ -1.09
CCDC88A-211ENST00000471947 PLAC8Q9NZF1 115 aa8.24□□□□□ -1.09
CCDC88A-211ENST00000471947 KLKP1Q107X0 134 aa8.23□□□□□ -1.09
CCDC88A-211ENST00000471947 PSPHP1O15172 72 aa8.22□□□□□ -1.09
CCDC88A-211ENST00000471947 DNAH3Q8TD57 4116 aa8.21□□□□□ -1.1
CCDC88A-211ENST00000471947 DNAH1Q9P2D7 4330 aa8.2□□□□□ -1.1
CCDC88A-211ENST00000471947 LINC00472Q9H8W2 130 aa8.19□□□□□ -1.1
CCDC88A-211ENST00000471947 BRK1Q8WUW1 75 aa8.18□□□□□ -1.1
CCDC88A-211ENST00000471947 PRR26Q8N8Z3 221 aa8.17□□□□□ -1.1
CCDC88A-211ENST00000471947 TYMSOSQ8TAI1 123 aa8.17□□□□□ -1.1
CCDC88A-211ENST00000471947 C8orf17Q9NRJ1 99 aa8.17□□□□□ -1.1
CCDC88A-211ENST00000471947 DNAH11Q96DT5 4516 aa8.17□□□□□ -1.1
CCDC88A-211ENST00000471947 FAM229BQ4G0N7 80 aa8.17□□□□□ -1.1
CCDC88A-211ENST00000471947 SERP1Q9Y6X1 66 aa8.17□□□□□ -1.1
CCDC88A-211ENST00000471947 NDUFC1O43677 76 aa8.16□□□□□ -1.1
CCDC88A-211ENST00000471947 IGKV2D-30A0A075B6S6 120 aa8.15□□□□□ -1.1
CCDC88A-211ENST00000471947 IGKV2-30P06310 120 aa8.15□□□□□ -1.1
CCDC88A-211ENST00000471947 KRTAP13-1Q8IUC0 172 aa8.15□□□□□ -1.1
CCDC88A-211ENST00000471947 TRAV22A0A0B4J277 110 aa8.14□□□□□ -1.11
CCDC88A-211ENST00000471947 SPRR1BP22528 89 aa8.14□□□□□ -1.11
CCDC88A-211ENST00000471947 A0A1B0GW54 56 aa8.13□□□□□ -1.11
CCDC88A-211ENST00000471947 A0A1B0GVX0 72 aa8.13□□□□□ -1.11
CCDC88A-211ENST00000471947 C9orf92A6NGG3 77 aa8.13□□□□□ -1.11
CCDC88A-211ENST00000471947 IGLV8-61A0A075B6I0 122 aa8.12□□□□□ -1.11
CCDC88A-211ENST00000471947 MMP24-AS1A0A0U1RRL7 71 aa8.12□□□□□ -1.11
CCDC88A-211ENST00000471947 MRPL34Q9BQ48 92 aaKnown RBP8.09□□□□□ -1.11
CCDC88A-211ENST00000471947 SMIM26A0A096LP01 95 aa8.08□□□□□ -1.12
CCDC88A-211ENST00000471947 VPS13DQ5THJ4 4388 aa8.08□□□□□ -1.12
CCDC88A-211ENST00000471947 SPINK1P00995 79 aa8.08□□□□□ -1.12
CCDC88A-211ENST00000471947 FRAS1Q86XX4 4008 aa8.07□□□□□ -1.12
CCDC88A-211ENST00000471947 LINC00313P59037 77 aa8.07□□□□□ -1.12
CCDC88A-211ENST00000471947 Q96NJ1 140 aa8.06□□□□□ -1.12
CCDC88A-211ENST00000471947 KRTAP13-2Q52LG2 175 aa8.04□□□□□ -1.12
CCDC88A-211ENST00000471947 CHKB-CPT1BH3BT56 60 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms