RNA–Protein interactions for RNA: ENST00000468653.5

SMC4-209, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 1,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-209ENST00000468653 KMT2CQ8NEZ4 4911 aaKnown RBP11.56□□□□□ -0.56
SMC4-209ENST00000468653 C21orf62-AS1Q17RA5 79 aa11.54□□□□□ -0.56
SMC4-209ENST00000468653 ZNF706Q9Y5V0 76 aaPredicted RBP11.54□□□□□ -0.56
SMC4-209ENST00000468653 LINC00846Q9NV44 126 aa11.54□□□□□ -0.56
SMC4-209ENST00000468653 SPRR4Q96PI1 79 aa11.53□□□□□ -0.56
SMC4-209ENST00000468653 SIGMAR1Q99720 223 aa11.53□□□□□ -0.56
SMC4-209ENST00000468653 XGP55808 180 aa11.52□□□□□ -0.57
SMC4-209ENST00000468653 SRRM2Q9UQ35 2752 aaKnown RBP11.51□□□□□ -0.57
SMC4-209ENST00000468653 IGLV8-61A0A075B6I0 122 aa11.48□□□□□ -0.57
SMC4-209ENST00000468653 MT-ATP8P03928 68 aa11.48□□□□□ -0.57
SMC4-209ENST00000468653 LINC00483Q53H64 154 aa11.47□□□□□ -0.57
SMC4-209ENST00000468653 LINC00643Q86TS7 51 aa11.46□□□□□ -0.57
SMC4-209ENST00000468653 PKHD1P08F94 4074 aa11.46□□□□□ -0.57
SMC4-209ENST00000468653 UBL5Q9BZL1 73 aa11.45□□□□□ -0.58
SMC4-209ENST00000468653 IGFL1Q6UW32 110 aa11.44□□□□□ -0.58
SMC4-209ENST00000468653 A0A1W2PNM2 257 aa11.44□□□□□ -0.58
SMC4-209ENST00000468653 Q6JHZ5 121 aa11.43□□□□□ -0.58
SMC4-209ENST00000468653 Q8NBF4 154 aa11.43□□□□□ -0.58
SMC4-209ENST00000468653 IGLV9-49A0A0B4J1Y8 123 aa11.42□□□□□ -0.58
SMC4-209ENST00000468653 A0A0G2JQZ4 141 aa11.42□□□□□ -0.58
SMC4-209ENST00000468653 ANAPC11Q9NYG5 84 aa11.41□□□□□ -0.58
SMC4-209ENST00000468653 LRP1BQ9NZR2 4599 aa11.41□□□□□ -0.58
SMC4-209ENST00000468653 C9orf153Q5TBE3 101 aa11.4□□□□□ -0.58
SMC4-209ENST00000468653 RPL37AP61513 92 aaKnown RBP11.39□□□□□ -0.59
SMC4-209ENST00000468653 A0A1B0GW54 56 aa11.39□□□□□ -0.59
SMC4-209ENST00000468653 DYNC1H1Q14204 4646 aaKnown RBP11.38□□□□□ -0.59
SMC4-209ENST00000468653 SMR3BP02814 79 aaPredicted RBP11.38□□□□□ -0.59
SMC4-209ENST00000468653 Q6ZVQ6 151 aa11.38□□□□□ -0.59
SMC4-209ENST00000468653 CRYGAP11844 174 aa11.36□□□□□ -0.59
SMC4-209ENST00000468653 IGKV3D-7A0A0C4DH55 119 aa11.34□□□□□ -0.59
SMC4-209ENST00000468653 MOBPQ13875 183 aa11.34□□□□□ -0.59
SMC4-209ENST00000468653 NREPQ16612 68 aa11.33□□□□□ -0.59
SMC4-209ENST00000468653 TRBV7-7A0A0K0K1E9 115 aa11.31□□□□□ -0.6
SMC4-209ENST00000468653 ATP5EP2Q5VTU8 51 aa11.31□□□□□ -0.6
SMC4-209ENST00000468653 RYR3Q15413 4870 aa11.3□□□□□ -0.6
SMC4-209ENST00000468653 Q6Q795 121 aa11.29□□□□□ -0.6
SMC4-209ENST00000468653 IMUPQ9GZP8 106 aa11.28□□□□□ -0.6
SMC4-209ENST00000468653 A0A087WSZ3 146 aa11.28□□□□□ -0.6
SMC4-209ENST00000468653 SPINK6Q6UWN8 80 aa11.28□□□□□ -0.6
SMC4-209ENST00000468653 VPS13BQ7Z7G8 4022 aa11.26□□□□□ -0.61
SMC4-209ENST00000468653 SCGB1A1P11684 91 aa11.25□□□□□ -0.61
SMC4-209ENST00000468653 FAM229BQ4G0N7 80 aa11.25□□□□□ -0.61
SMC4-209ENST00000468653 CXCL6P80162 114 aa11.24□□□□□ -0.61
SMC4-209ENST00000468653 HRCT1Q6UXD1 115 aa11.23□□□□□ -0.61
SMC4-209ENST00000468653 APOBP04114 4563 aaKnown RBP11.23□□□□□ -0.61
SMC4-209ENST00000468653 KRTAP1-4P0C5Y4 121 aa11.23□□□□□ -0.61
SMC4-209ENST00000468653 A0A087X002 238 aa11.22□□□□□ -0.61
SMC4-209ENST00000468653 BPY2O14599 106 aa11.22□□□□□ -0.61
SMC4-209ENST00000468653 HIST1H4AP62805 103 aaKnown RBP11.22□□□□□ -0.61
SMC4-209ENST00000468653 SSBP3-AS1Q7Z2R9 100 aa11.22□□□□□ -0.61
SMC4-209ENST00000468653 CDK2AP2O75956 126 aa11.2□□□□□ -0.62
SMC4-209ENST00000468653 PLA2G1BP04054 148 aaKnown RBP11.2□□□□□ -0.62
SMC4-209ENST00000468653 KRTAP10-4P60372 401 aaPredicted RBP11.19□□□□□ -0.62
SMC4-209ENST00000468653 KRTAP13-2Q52LG2 175 aa11.18□□□□□ -0.62
SMC4-209ENST00000468653 FAM229AH3BQW9 127 aa11.18□□□□□ -0.62
SMC4-209ENST00000468653 A0A087WVE0 104 aa11.15□□□□□ -0.62
SMC4-209ENST00000468653 SS18L2Q9UHA2 77 aa11.13□□□□□ -0.63
SMC4-209ENST00000468653 FAM236AA0A1B0GUQ0 79 aa11.13□□□□□ -0.63
SMC4-209ENST00000468653 FAM236BA0A1B0GV22 79 aa11.13□□□□□ -0.63
SMC4-209ENST00000468653 CD164Q04900 197 aa11.13□□□□□ -0.63
SMC4-209ENST00000468653 DEFB116Q30KQ4 102 aa11.13□□□□□ -0.63
SMC4-209ENST00000468653 Q8N9L7 120 aa11.11□□□□□ -0.63
SMC4-209ENST00000468653 TYMSOSQ8TAI1 123 aa11.1□□□□□ -0.63
SMC4-209ENST00000468653 PCP4P48539 62 aa11.09□□□□□ -0.63
SMC4-209ENST00000468653 LINC00472Q9H8W2 130 aa11.09□□□□□ -0.63
SMC4-209ENST00000468653 DSCR10P59022 87 aa11.08□□□□□ -0.64
SMC4-209ENST00000468653 Q5VSD8 79 aa11.08□□□□□ -0.64
SMC4-209ENST00000468653 IGKV4-1P06312 121 aa11.07□□□□□ -0.64
SMC4-209ENST00000468653 PRR26Q8N8Z3 221 aa11.07□□□□□ -0.64
SMC4-209ENST00000468653 FAT1Q14517 4588 aa11.07□□□□□ -0.64
SMC4-209ENST00000468653 J3KT08 172 aa11.03□□□□□ -0.64
SMC4-209ENST00000468653 K7EQZ3 153 aa11.03□□□□□ -0.64
SMC4-209ENST00000468653 C4orf48Q5BLP8 95 aa11.03□□□□□ -0.64
SMC4-209ENST00000468653 Q96NJ1 140 aa11.02□□□□□ -0.65
SMC4-209ENST00000468653 ANAPC13Q9BS18 74 aa11.01□□□□□ -0.65
SMC4-209ENST00000468653 A8MWP4 228 aa10.98□□□□□ -0.65
SMC4-209ENST00000468653 ATOX1O00244 68 aa10.98□□□□□ -0.65
SMC4-209ENST00000468653 HSPG2P98160 4391 aa10.98□□□□□ -0.65
SMC4-209ENST00000468653 LINC00304Q8N9R0 145 aa10.96□□□□□ -0.65
SMC4-209ENST00000468653 NDUFB1O75438 58 aa10.95□□□□□ -0.66
SMC4-209ENST00000468653 ASB16-AS1Q495Z4 193 aa10.95□□□□□ -0.66
SMC4-209ENST00000468653 Q5XG85 94 aa10.95□□□□□ -0.66
SMC4-209ENST00000468653 LIMD2Q9BT23 127 aa10.95□□□□□ -0.66
SMC4-209ENST00000468653 RYR1P21817 5038 aa10.95□□□□□ -0.66
SMC4-209ENST00000468653 SPINK1P00995 79 aa10.95□□□□□ -0.66
SMC4-209ENST00000468653 PRR15Q8IV56 129 aa10.95□□□□□ -0.66
SMC4-209ENST00000468653 Q8N1X5 172 aa10.94□□□□□ -0.66
SMC4-209ENST00000468653 SPAG11AQ6PDA7 123 aa10.93□□□□□ -0.66
SMC4-209ENST00000468653 KRTAP17-1Q9BYP8 105 aa10.92□□□□□ -0.66
SMC4-209ENST00000468653 HCG22E2RYF7 251 aa10.9□□□□□ -0.66
SMC4-209ENST00000468653 EPPK1P58107 5090 aaKnown RBP10.9□□□□□ -0.66
SMC4-209ENST00000468653 PKHD1L1Q86WI1 4243 aa10.88□□□□□ -0.67
SMC4-209ENST00000468653 C1orf195Q5TG92 126 aa10.87□□□□□ -0.67
SMC4-209ENST00000468653 A0A1B0GVX0 72 aa10.86□□□□□ -0.67
SMC4-209ENST00000468653 RPS29P62273 56 aaKnown RBP10.86□□□□□ -0.67
SMC4-209ENST00000468653 WFDC13Q8IUB5 93 aa10.86□□□□□ -0.67
SMC4-209ENST00000468653 KIAA1109Q2LD37 5005 aa10.86□□□□□ -0.67
SMC4-209ENST00000468653 IGHV6-1A0A0B4J1U7 121 aa10.85□□□□□ -0.67
SMC4-209ENST00000468653 SMIM20Q8N5G0 67 aa10.84□□□□□ -0.67
SMC4-209ENST00000468653 SERP2Q8N6R1 65 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms