RNA–Protein interactions for RNA: ENST00000462700.5

COL9A3-203, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 1,237 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-203ENST00000462700 LIMD2Q9BT23 127 aa10.57□□□□□ -0.72
COL9A3-203ENST00000462700 CD164Q04900 197 aa10.56□□□□□ -0.72
COL9A3-203ENST00000462700 KRTAP13-3Q3SY46 172 aa10.56□□□□□ -0.72
COL9A3-203ENST00000462700 MUC17Q685J3 4493 aa10.54□□□□□ -0.72
COL9A3-203ENST00000462700 TMEM238LA0A1B0GVL6 79 aa10.53□□□□□ -0.72
COL9A3-203ENST00000462700 A6NJY4 79 aa10.53□□□□□ -0.72
COL9A3-203ENST00000462700 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP10.53□□□□□ -0.72
COL9A3-203ENST00000462700 MUC2Q02817 5179 aa10.52□□□□□ -0.73
COL9A3-203ENST00000462700 FXYD2P54710 66 aa10.52□□□□□ -0.73
COL9A3-203ENST00000462700 A0A0G2JQZ4 141 aa10.51□□□□□ -0.73
COL9A3-203ENST00000462700 F8WEM9 126 aa10.51□□□□□ -0.73
COL9A3-203ENST00000462700 HSD52Q0P140 79 aa10.49□□□□□ -0.73
COL9A3-203ENST00000462700 PRO1854Q9UHT4 67 aa10.49□□□□□ -0.73
COL9A3-203ENST00000462700 H0YGX0 51 aa10.48□□□□□ -0.73
COL9A3-203ENST00000462700 PPDPFLQ8WWR9 84 aa10.48□□□□□ -0.73
COL9A3-203ENST00000462700 Q5XG85 94 aa10.47□□□□□ -0.73
COL9A3-203ENST00000462700 FAM218AQ96MZ4 157 aa10.46□□□□□ -0.73
COL9A3-203ENST00000462700 IGLV8-61A0A075B6I0 122 aa10.45□□□□□ -0.74
COL9A3-203ENST00000462700 UQCR10Q9UDW1 63 aa10.45□□□□□ -0.74
COL9A3-203ENST00000462700 SNCGO76070 127 aa10.43□□□□□ -0.74
COL9A3-203ENST00000462700 Q6JHZ5 121 aa10.43□□□□□ -0.74
COL9A3-203ENST00000462700 OCIAD2Q56VL3 154 aa10.42□□□□□ -0.74
COL9A3-203ENST00000462700 SNHG12Q9BXW3 62 aa10.42□□□□□ -0.74
COL9A3-203ENST00000462700 TRIAP1O43715 76 aa10.41□□□□□ -0.74
COL9A3-203ENST00000462700 IGFL1Q6UW32 110 aa10.41□□□□□ -0.74
COL9A3-203ENST00000462700 CLEC2BQ92478 149 aa10.41□□□□□ -0.74
COL9A3-203ENST00000462700 A0A1B0GX51 115 aa10.39□□□□□ -0.75
COL9A3-203ENST00000462700 K7ERJ3 54 aa10.39□□□□□ -0.75
COL9A3-203ENST00000462700 ASB16-AS1Q495Z4 193 aa10.38□□□□□ -0.75
COL9A3-203ENST00000462700 XP32Q5T750 250 aa10.38□□□□□ -0.75
COL9A3-203ENST00000462700 C1orf195Q5TG92 126 aa10.38□□□□□ -0.75
COL9A3-203ENST00000462700 TCL1BO95988 128 aa10.37□□□□□ -0.75
COL9A3-203ENST00000462700 A0A0U1RQV1 116 aa10.35□□□□□ -0.75
COL9A3-203ENST00000462700 H3BUT2 72 aa10.35□□□□□ -0.75
COL9A3-203ENST00000462700 TRBV7-7A0A0K0K1E9 115 aa10.34□□□□□ -0.75
COL9A3-203ENST00000462700 SEC61BP60468 96 aaKnown RBP10.34□□□□□ -0.75
COL9A3-203ENST00000462700 C9orf92A6NGG3 77 aa10.33□□□□□ -0.76
COL9A3-203ENST00000462700 PSMB2P49721 201 aa10.33□□□□□ -0.76
COL9A3-203ENST00000462700 NDUFV3P56181 108 aaKnown RBP10.33□□□□□ -0.76
COL9A3-203ENST00000462700 LCE2AQ5TA79 106 aaPredicted RBP10.33□□□□□ -0.76
COL9A3-203ENST00000462700 GHRHP01286 108 aa10.32□□□□□ -0.76
COL9A3-203ENST00000462700 COX6CP09669 75 aa10.29□□□□□ -0.76
COL9A3-203ENST00000462700 FABP2P12104 132 aa10.29□□□□□ -0.76
COL9A3-203ENST00000462700 DNAL4O96015 105 aa10.27□□□□□ -0.77
COL9A3-203ENST00000462700 SMIM6P0DI80 62 aa10.27□□□□□ -0.77
COL9A3-203ENST00000462700 H3BMG7 143 aa10.26□□□□□ -0.77
COL9A3-203ENST00000462700 Q6Q795 121 aa10.26□□□□□ -0.77
COL9A3-203ENST00000462700 FAT4Q6V0I7 4981 aa10.25□□□□□ -0.77
COL9A3-203ENST00000462700 ORMDL1Q9P0S3 153 aa10.25□□□□□ -0.77
COL9A3-203ENST00000462700 KRTAP4-1Q9BYQ7 146 aa10.24□□□□□ -0.77
COL9A3-203ENST00000462700 TEN1Q86WV5 123 aa10.23□□□□□ -0.77
COL9A3-203ENST00000462700 H3BQ85 93 aa10.22□□□□□ -0.77
COL9A3-203ENST00000462700 SS18L2Q9UHA2 77 aa10.2□□□□□ -0.78
COL9A3-203ENST00000462700 TMEM256-PLSCR3K7ERE1 68 aa10.19□□□□□ -0.78
COL9A3-203ENST00000462700 M0R143 59 aa10.19□□□□□ -0.78
COL9A3-203ENST00000462700 LST1O00453 97 aa10.19□□□□□ -0.78
COL9A3-203ENST00000462700 SCGB1C2P0DMR2 95 aa10.19□□□□□ -0.78
COL9A3-203ENST00000462700 TRACP01848 142 aa10.18□□□□□ -0.78
COL9A3-203ENST00000462700 A0A087WSZ3 146 aa10.17□□□□□ -0.78
COL9A3-203ENST00000462700 PCOTHQ58A44 107 aa10.17□□□□□ -0.78
COL9A3-203ENST00000462700 A0A1B0GV72 72 aa10.15□□□□□ -0.78
COL9A3-203ENST00000462700 A0A1W2PNM2 257 aa10.15□□□□□ -0.78
COL9A3-203ENST00000462700 SMCPP49901 116 aaPredicted RBP10.15□□□□□ -0.78
COL9A3-203ENST00000462700 ANKRD29Q8N6D5 301 aa10.14□□□□□ -0.79
COL9A3-203ENST00000462700 RPL37P61927 97 aaKnown RBP10.13□□□□□ -0.79
COL9A3-203ENST00000462700 UBE2V1Q13404 147 aa10.13□□□□□ -0.79
COL9A3-203ENST00000462700 LOC105371267A0A1B0GV96 52 aa10.12□□□□□ -0.79
COL9A3-203ENST00000462700 TSTD3H0UI37 97 aa10.11□□□□□ -0.79
COL9A3-203ENST00000462700 TRBV7-4A0A0J9YYF1 115 aa10.09□□□□□ -0.79
COL9A3-203ENST00000462700 Q96NJ1 140 aa10.09□□□□□ -0.79
COL9A3-203ENST00000462700 NAA38Q9BRA0 125 aaKnown RBP10.09□□□□□ -0.79
COL9A3-203ENST00000462700 OBSCN-AS1Q96MR7 158 aa10.08□□□□□ -0.8
COL9A3-203ENST00000462700 CCKP06307 115 aa10.05□□□□□ -0.8
COL9A3-203ENST00000462700 BAALC-AS2P0C853 105 aa10.04□□□□□ -0.8
COL9A3-203ENST00000462700 ATXN8Q156A1 80 aa10.04□□□□□ -0.8
COL9A3-203ENST00000462700 RBM3P98179 157 aaKnown RBP10.03□□□□□ -0.8
COL9A3-203ENST00000462700 BATFQ16520 125 aa10.01□□□□□ -0.81
COL9A3-203ENST00000462700 Q75L30 129 aa10□□□□□ -0.81
COL9A3-203ENST00000462700 DSCR8Q96T75 97 aa10□□□□□ -0.81
COL9A3-203ENST00000462700 SIGMAR1Q99720 223 aa9.99□□□□□ -0.81
COL9A3-203ENST00000462700 LYRM7Q5U5X0 104 aa9.98□□□□□ -0.81
COL9A3-203ENST00000462700 VPS25Q9BRG1 176 aa9.98□□□□□ -0.81
COL9A3-203ENST00000462700 IGKV4-1P06312 121 aa9.96□□□□□ -0.82
COL9A3-203ENST00000462700 KRTAP19-2Q3LHN2 52 aa9.96□□□□□ -0.82
COL9A3-203ENST00000462700 LINC00472Q9H8W2 130 aa9.96□□□□□ -0.82
COL9A3-203ENST00000462700 C9JAW5 83 aa9.95□□□□□ -0.82
COL9A3-203ENST00000462700 LCE2CQ5TA81 110 aa9.95□□□□□ -0.82
COL9A3-203ENST00000462700 DSCR10P59022 87 aa9.94□□□□□ -0.82
COL9A3-203ENST00000462700 ATP11AUNQ6ZP68 121 aa9.94□□□□□ -0.82
COL9A3-203ENST00000462700 C20orf166-AS1Q96NR2 134 aa9.94□□□□□ -0.82
COL9A3-203ENST00000462700 TRBV20-1A0A075B6N2 111 aa9.93□□□□□ -0.82
COL9A3-203ENST00000462700 DEFB116Q30KQ4 102 aa9.93□□□□□ -0.82
COL9A3-203ENST00000462700 JMJD7-PLA2G4BH0Y9G9 81 aa9.92□□□□□ -0.82
COL9A3-203ENST00000462700 A8MUU9 505 aa9.91□□□□□ -0.82
COL9A3-203ENST00000462700 C9orf118A6NHY6 69 aa9.89□□□□□ -0.83
COL9A3-203ENST00000462700 TAX1BP3O14907 124 aa9.89□□□□□ -0.83
COL9A3-203ENST00000462700 C21orf62-AS1Q17RA5 79 aa9.89□□□□□ -0.83
COL9A3-203ENST00000462700 LINC00313P59037 77 aa9.88□□□□□ -0.83
COL9A3-203ENST00000462700 Q6ZQT0 140 aa9.88□□□□□ -0.83
COL9A3-203ENST00000462700 LOC110117498A0A087WWA1 95 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 151.8 ms