RNA–Protein interactions for RNA: ENST00000460289.5

PTPN4-208, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-208ENST00000460289 RAB37Q96AX2 223 aa12.73□□□□□ -0.37
PTPN4-208ENST00000460289 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP12.71□□□□□ -0.37
PTPN4-208ENST00000460289 A0A0G2JQZ4 141 aa12.7□□□□□ -0.38
PTPN4-208ENST00000460289 XP32Q5T750 250 aa12.69□□□□□ -0.38
PTPN4-208ENST00000460289 C2orf91Q6ZV80 131 aa12.69□□□□□ -0.38
PTPN4-208ENST00000460289 A0A0B4J2C4 111 aa12.68□□□□□ -0.38
PTPN4-208ENST00000460289 PPDPFLQ8WWR9 84 aa12.68□□□□□ -0.38
PTPN4-208ENST00000460289 SNCGO76070 127 aa12.67□□□□□ -0.38
PTPN4-208ENST00000460289 Q6JHZ5 121 aa12.66□□□□□ -0.38
PTPN4-208ENST00000460289 CEND1Q8N111 149 aa12.65□□□□□ -0.38
PTPN4-208ENST00000460289 IGLV8-61A0A075B6I0 122 aa12.64□□□□□ -0.39
PTPN4-208ENST00000460289 H0YGX0 51 aa12.64□□□□□ -0.39
PTPN4-208ENST00000460289 TCL1BO95988 128 aa12.64□□□□□ -0.39
PTPN4-208ENST00000460289 TMEM238LA0A1B0GVL6 79 aa12.63□□□□□ -0.39
PTPN4-208ENST00000460289 A6NJY4 79 aa12.63□□□□□ -0.39
PTPN4-208ENST00000460289 OCIAD2Q56VL3 154 aa12.63□□□□□ -0.39
PTPN4-208ENST00000460289 C1orf195Q5TG92 126 aa12.63□□□□□ -0.39
PTPN4-208ENST00000460289 SNHG12Q9BXW3 62 aa12.63□□□□□ -0.39
PTPN4-208ENST00000460289 FAT4Q6V0I7 4981 aa12.62□□□□□ -0.39
PTPN4-208ENST00000460289 CLEC2BQ92478 149 aa12.6□□□□□ -0.39
PTPN4-208ENST00000460289 PRO1854Q9UHT4 67 aa12.6□□□□□ -0.39
PTPN4-208ENST00000460289 C9orf92A6NGG3 77 aa12.59□□□□□ -0.39
PTPN4-208ENST00000460289 PYY3Q5JQD4 70 aa12.59□□□□□ -0.39
PTPN4-208ENST00000460289 IGFL1Q6UW32 110 aa12.58□□□□□ -0.4
PTPN4-208ENST00000460289 FXYD2P54710 66 aa12.54□□□□□ -0.4
PTPN4-208ENST00000460289 TRBV7-7A0A0K0K1E9 115 aa12.53□□□□□ -0.4
PTPN4-208ENST00000460289 LCE2AQ5TA79 106 aaPredicted RBP12.53□□□□□ -0.4
PTPN4-208ENST00000460289 FAM218AQ96MZ4 157 aa12.53□□□□□ -0.4
PTPN4-208ENST00000460289 A0A1B0GX51 115 aa12.52□□□□□ -0.41
PTPN4-208ENST00000460289 GHRHP01286 108 aa12.52□□□□□ -0.41
PTPN4-208ENST00000460289 KRTAP4-1Q9BYQ7 146 aa12.52□□□□□ -0.41
PTPN4-208ENST00000460289 TMA7Q9Y2S6 64 aaKnown RBP12.52□□□□□ -0.41
PTPN4-208ENST00000460289 HSD52Q0P140 79 aa12.5□□□□□ -0.41
PTPN4-208ENST00000460289 H3BUT2 72 aa12.49□□□□□ -0.41
PTPN4-208ENST00000460289 NDUFV3P56181 108 aaKnown RBP12.47□□□□□ -0.41
PTPN4-208ENST00000460289 TRIAP1O43715 76 aa12.45□□□□□ -0.42
PTPN4-208ENST00000460289 PCOTHQ58A44 107 aa12.45□□□□□ -0.42
PTPN4-208ENST00000460289 UQCR10Q9UDW1 63 aa12.45□□□□□ -0.42
PTPN4-208ENST00000460289 Q6Q795 121 aa12.42□□□□□ -0.42
PTPN4-208ENST00000460289 FABP2P12104 132 aa12.41□□□□□ -0.42
PTPN4-208ENST00000460289 PSMB2P49721 201 aa12.41□□□□□ -0.42
PTPN4-208ENST00000460289 H3BMG7 143 aa12.4□□□□□ -0.42
PTPN4-208ENST00000460289 TEN1Q86WV5 123 aa12.4□□□□□ -0.42
PTPN4-208ENST00000460289 LST1O00453 97 aa12.39□□□□□ -0.43
PTPN4-208ENST00000460289 COX6CP09669 75 aa12.39□□□□□ -0.43
PTPN4-208ENST00000460289 SS18L2Q9UHA2 77 aa12.39□□□□□ -0.43
PTPN4-208ENST00000460289 K7ERJ3 54 aa12.38□□□□□ -0.43
PTPN4-208ENST00000460289 DNAL4O96015 105 aa12.37□□□□□ -0.43
PTPN4-208ENST00000460289 H3BQ85 93 aa12.36□□□□□ -0.43
PTPN4-208ENST00000460289 RPL37P61927 97 aaKnown RBP12.36□□□□□ -0.43
PTPN4-208ENST00000460289 ORMDL1Q9P0S3 153 aa12.34□□□□□ -0.43
PTPN4-208ENST00000460289 TMEM256-PLSCR3K7ERE1 68 aa12.29□□□□□ -0.44
PTPN4-208ENST00000460289 A0A087WSZ3 146 aa12.28□□□□□ -0.44
PTPN4-208ENST00000460289 OBSCN-AS1Q96MR7 158 aa12.27□□□□□ -0.45
PTPN4-208ENST00000460289 ANKRD29Q8N6D5 301 aa12.26□□□□□ -0.45
PTPN4-208ENST00000460289 SCGB1C2P0DMR2 95 aa12.24□□□□□ -0.45
PTPN4-208ENST00000460289 A0A1W2PNM2 257 aa12.23□□□□□ -0.45
PTPN4-208ENST00000460289 TRACP01848 142 aa12.22□□□□□ -0.45
PTPN4-208ENST00000460289 TRBV7-4A0A0J9YYF1 115 aa12.2□□□□□ -0.46
PTPN4-208ENST00000460289 UBE2V1Q13404 147 aa12.2□□□□□ -0.46
PTPN4-208ENST00000460289 LCE2CQ5TA81 110 aa12.2□□□□□ -0.46
PTPN4-208ENST00000460289 Q75L30 129 aa12.2□□□□□ -0.46
PTPN4-208ENST00000460289 ATP11AUNQ6ZP68 121 aa12.19□□□□□ -0.46
PTPN4-208ENST00000460289 KRTAP19-2Q3LHN2 52 aa12.18□□□□□ -0.46
PTPN4-208ENST00000460289 Q96NJ1 140 aa12.18□□□□□ -0.46
PTPN4-208ENST00000460289 A0A1B0GV72 72 aa12.17□□□□□ -0.46
PTPN4-208ENST00000460289 KRTAP9-2Q9BYQ4 174 aa12.16□□□□□ -0.46
PTPN4-208ENST00000460289 M0R143 59 aa12.15□□□□□ -0.46
PTPN4-208ENST00000460289 CCKP06307 115 aa12.13□□□□□ -0.47
PTPN4-208ENST00000460289 SMIM6P0DI80 62 aa12.11□□□□□ -0.47
PTPN4-208ENST00000460289 RBM3P98179 157 aaKnown RBP12.09□□□□□ -0.47
PTPN4-208ENST00000460289 SIGMAR1Q99720 223 aa12.09□□□□□ -0.47
PTPN4-208ENST00000460289 C20orf166-AS1Q96NR2 134 aa12.08□□□□□ -0.48
PTPN4-208ENST00000460289 IGKV4-1P06312 121 aa12.07□□□□□ -0.48
PTPN4-208ENST00000460289 BAALC-AS2P0C853 105 aa12.07□□□□□ -0.48
PTPN4-208ENST00000460289 MT1HP80294 61 aa12.06□□□□□ -0.48
PTPN4-208ENST00000460289 DSCR8Q96T75 97 aa12.06□□□□□ -0.48
PTPN4-208ENST00000460289 A8MUU9 505 aa12.05□□□□□ -0.48
PTPN4-208ENST00000460289 COX6B2Q6YFQ2 88 aa12.04□□□□□ -0.48
PTPN4-208ENST00000460289 DSCR10P59022 87 aa12.03□□□□□ -0.48
PTPN4-208ENST00000460289 LINC00472Q9H8W2 130 aa12.03□□□□□ -0.48
PTPN4-208ENST00000460289 LINC00313P59037 77 aa12.02□□□□□ -0.49
PTPN4-208ENST00000460289 ATXN8Q156A1 80 aa12.02□□□□□ -0.49
PTPN4-208ENST00000460289 VPS25Q9BRG1 176 aa12.02□□□□□ -0.49
PTPN4-208ENST00000460289 C9JAW5 83 aa11.99□□□□□ -0.49
PTPN4-208ENST00000460289 DEFB116Q30KQ4 102 aa11.99□□□□□ -0.49
PTPN4-208ENST00000460289 TSTD3H0UI37 97 aa11.98□□□□□ -0.49
PTPN4-208ENST00000460289 C21orf62-AS1Q17RA5 79 aa11.98□□□□□ -0.49
PTPN4-208ENST00000460289 NAA38Q9BRA0 125 aaKnown RBP11.98□□□□□ -0.49
PTPN4-208ENST00000460289 JMJD7-PLA2G4BH0Y9G9 81 aa11.94□□□□□ -0.5
PTPN4-208ENST00000460289 LYRM7Q5U5X0 104 aa11.93□□□□□ -0.5
PTPN4-208ENST00000460289 IGHV6-1A0A0B4J1U7 121 aa11.91□□□□□ -0.5
PTPN4-208ENST00000460289 KRTAP16-1A8MUX0 517 aa11.9□□□□□ -0.5
PTPN4-208ENST00000460289 M0R2T5 61 aa11.9□□□□□ -0.5
PTPN4-208ENST00000460289 TRBV20-1A0A075B6N2 111 aa11.88□□□□□ -0.51
PTPN4-208ENST00000460289 BATFQ16520 125 aa11.88□□□□□ -0.51
PTPN4-208ENST00000460289 Q6ZQT0 140 aa11.88□□□□□ -0.51
PTPN4-208ENST00000460289 NOTCH2NLQ7Z3S9 236 aa11.88□□□□□ -0.51
PTPN4-208ENST00000460289 J3KT08 172 aa11.87□□□□□ -0.51
PTPN4-208ENST00000460289 LCE2DQ5TA82 110 aaPredicted RBP11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 95.2 ms